Rmu_sc0014853.1_g000001

RNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014853.1
OG0015743
Physical Location & Seq
Reverse (-)
1 .. 892
892 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014853.1_g000001.1.cds

Sequence Viewer

Length: 410 bp
atgggtactctttatccacaggaaaatcctgttctctcggttgcacgttccactggtactacagggcccatgctggtgaacaaattcacccatgggaatcaaatggggaaggctgtatctcctgcaagctctgctgatattcagtgccaaacctccaagcaatctacttcccagaagagcaatgatgcgaacagagtaccgttaaaacctgctacacctggatggcgtcctccacgtgcccactcggggcccaacaataatcttgtgataagcttctcagatgatgacagtcagagtgattctgaagaaacagaccgtgggaaactaaaagctttacaaactaaaagtaatatggctcgagggagagaacgtcttccatgctccgagcaagtaatgctcggcctttttgg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3H1

Protein Analysis

137

Amino Acids

14.73

Weight (kDa)

9.34

Isoelectric Point (pI)

42.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 217
AcsI RAATTY 1 cut(s) 83
AcuI CTGAAG 1 cut(s) 324
AcvI CACGTG 1 cut(s) 236
AcyI GRCGYC 1 cut(s) 226
AfaI GTAC 3 cut(s) 7, 58, 198
AfiI CCNNNNNNNGG 1 cut(s) 246
AjnI CCWGG 1 cut(s) 217
AluBI AGCT 3 cut(s) 129, 273, 332
AluI AGCT 3 cut(s) 129, 273, 332
Ama87I CYCGRG 2 cut(s) 244, 357
AoxI GGCC 3 cut(s) 65, 248, 400
ApaI GGGCCC 2 cut(s) 69, 252
ApoI RAATTY 1 cut(s) 83
Asp700I GAANNNNTTC 2 cut(s) 83, 372
AspS9I GGNCC 4 cut(s) 65, 66, 248, 249
AsuHPI GGTGA 2 cut(s) 79, 88
AvaI CYCGRG 2 cut(s) 244, 357
BaeGI GKGCMC 3 cut(s) 69, 241, 252
BanII GRGCYC 2 cut(s) 69, 252
BbrPI CACGTG 1 cut(s) 236
BbsI GAAGAC 1 cut(s) 365
BccI CCATC 1 cut(s) 216
BciT130I CCWGG 1 cut(s) 219
BfmI CTRYAG 1 cut(s) 60
BfuAI ACCTGC 1 cut(s) 217
Bme1390I CCNGG 1 cut(s) 219
BmeT110I CYCGRG 2 cut(s) 244, 357
BmgT120I GGNCC 4 cut(s) 65, 66, 248, 249
BmiI GGNNCC 3 cut(s) 67, 249, 250
BmrFI CCNGG 1 cut(s) 219
BmsI GCATC 1 cut(s) 175
BpiI GAAGAC 1 cut(s) 365
BsaAI YACGTR 1 cut(s) 236
BsaHI GRCGYC 1 cut(s) 226
BsaJI CCNNGG 2 cut(s) 91, 316
BsaXI ACNNNNNCTCC 2 cut(s) 355, 385
Bsc4I CCNNNNNNNGG 1 cut(s) 246
Bse1I ACTGG 1 cut(s) 58
Bse3DI GCAATG 1 cut(s) 187
BseBI CCWGG 1 cut(s) 219
BseDI CCNNGG 2 cut(s) 91, 316
BseGI GGATG 1 cut(s) 227
BseLI CCNNNNNNNGG 1 cut(s) 246
BseMI GCAATG 1 cut(s) 187
BseMII CTCAG 1 cut(s) 291
BseNI ACTGG 1 cut(s) 58
BseSI GKGCMC 3 cut(s) 69, 241, 252
BshFI GGCC 3 cut(s) 67, 250, 402
BsiHKCI CYCGRG 2 cut(s) 244, 357
BslI CCNNNNNNNGG 1 cut(s) 246
BsnI GGCC 3 cut(s) 67, 250, 402
BsoBI CYCGRG 2 cut(s) 244, 357
Bsp120I GGGCCC 2 cut(s) 65, 248
Bsp1286I GDGCHC 3 cut(s) 69, 241, 252
Bsp19I CCATGG 1 cut(s) 91
BspANI GGCC 3 cut(s) 67, 250, 402
BspCNI CTCAG 1 cut(s) 290
BspLI GGNNCC 3 cut(s) 67, 249, 250
BspMI ACCTGC 1 cut(s) 217
BspQI GCTCTTC 1 cut(s) 170
BsrDI GCAATG 1 cut(s) 187
BsrI ACTGG 1 cut(s) 58
BssECI CCNNGG 2 cut(s) 91, 316
BssNI GRCGYC 1 cut(s) 226
BssT1I CCWWGG 1 cut(s) 91
Bst2UI CCWGG 1 cut(s) 219
Bst4CI ACNGT 3 cut(s) 201, 290, 317
Bst6I CTCTTC 1 cut(s) 170
BstACI GRCGYC 1 cut(s) 226
BstAPI GCANNNNNTGC 2 cut(s) 131, 394
BstBAI YACGTR 1 cut(s) 236
BstC8I GCNNGC 1 cut(s) 127
BstDEI CTNAG 1 cut(s) 277
BstDSI CCRYGG 2 cut(s) 91, 316
BstF5I GGATG 1 cut(s) 227
BstMWI GCNNNNNNNGC 2 cut(s) 131, 394
BstNI CCWGG 1 cut(s) 219
BstSCI CCNGG 1 cut(s) 217
BstSFI CTRYAG 1 cut(s) 60
BstSLI GKGCMC 3 cut(s) 69, 241, 252
BstV2I GAAGAC 1 cut(s) 365
BsuRI GGCC 3 cut(s) 67, 250, 402
BtgI CCRYGG 2 cut(s) 91, 316
BtsCI GGATG 1 cut(s) 227
BtsIMutI CAGTG 2 cut(s) 51, 149
BveI ACCTGC 1 cut(s) 217
Cac8I GCNNGC 1 cut(s) 127
Cfr13I GGNCC 4 cut(s) 65, 66, 248, 249
CseI GACGC 1 cut(s) 215
Csp6I GTAC 3 cut(s) 6, 57, 197
CviAII CATG 3 cut(s) 70, 92, 378
CviJI RGCY 8 cut(s) 67, 113, 129, 250, 273, 332, 356, 402
CviKI_1 RGCY 8 cut(s) 67, 113, 129, 250, 273, 332, 356, 402
CviQI GTAC 3 cut(s) 6, 57, 197
DdeI CTNAG 1 cut(s) 277
Eam1104I CTCTTC 1 cut(s) 170
EarI CTCTTC 1 cut(s) 170
Eco130I CCWWGG 1 cut(s) 91
Eco24I GRGCYC 2 cut(s) 69, 252
Eco57I CTGAAG 1 cut(s) 324
Eco72I CACGTG 1 cut(s) 236
Eco88I CYCGRG 2 cut(s) 244, 357
EcoO109I RGGNCCY 2 cut(s) 65, 248
EcoRII CCWGG 1 cut(s) 217
EcoT14I CCWWGG 1 cut(s) 91
EcoT38I GRGCYC 2 cut(s) 69, 252
ErhI CCWWGG 1 cut(s) 91
FaeI CATG 3 cut(s) 73, 95, 381
FaiI YATR 4 cut(s) 71, 93, 353, 379
FatI CATG 3 cut(s) 69, 91, 377
FokI GGATG 1 cut(s) 234
FriOI GRGCYC 2 cut(s) 69, 252
HaeIII GGCC 3 cut(s) 67, 250, 402
HgaI GACGC 1 cut(s) 215
Hin1I GRCGYC 1 cut(s) 226
Hin1II CATG 3 cut(s) 73, 95, 381
HindIII AAGCTT 2 cut(s) 271, 330
HinfI GANTC 2 cut(s) 97, 299
HphI GGTGA 2 cut(s) 79, 88
Hpy166II GTNNAC 1 cut(s) 79
Hpy188I TCNGA 4 cut(s) 280, 294, 304, 385
Hpy8I GTNNAC 1 cut(s) 79
HpyAV CCTTC 1 cut(s) 103
HpyCH4III ACNGT 3 cut(s) 201, 290, 317
HpyCH4IV ACGT 3 cut(s) 46, 235, 370
HpyCH4V TGCA 2 cut(s) 44, 125
HpyF10VI GCNNNNNNNGC 2 cut(s) 131, 394
HpyF3I CTNAG 1 cut(s) 277
HpySE526I ACGT 3 cut(s) 46, 235, 370
Hsp92I GRCGYC 1 cut(s) 226
Hsp92II CATG 3 cut(s) 73, 95, 381
LguI GCTCTTC 1 cut(s) 170
LmnI GCTCC 1 cut(s) 386
LweI GCATC 1 cut(s) 175
MaeII ACGT 3 cut(s) 46, 235, 370
MboII GAAGA 3 cut(s) 187, 317, 365
MhlI GDGCHC 3 cut(s) 69, 241, 252
MluCI AATT 1 cut(s) 83
MnlI CCTC 3 cut(s) 163, 240, 353
MroXI GAANNNNTTC 2 cut(s) 83, 372
MseI TTAA 1 cut(s) 203
MslI CAYNNNNRTG 2 cut(s) 74, 220
MspR9I CCNGG 1 cut(s) 219
MvaI CCWGG 1 cut(s) 219
MwoI GCNNNNNNNGC 2 cut(s) 131, 394
NcoI CCATGG 1 cut(s) 91
NlaIII CATG 3 cut(s) 73, 95, 381
NlaIV GGNNCC 3 cut(s) 67, 249, 250
NmeAIII GCCGAG 1 cut(s) 378
PaeR7I CTCGAG 1 cut(s) 357
PciSI GCTCTTC 1 cut(s) 170
PdmI GAANNNNTTC 2 cut(s) 83, 372
PfeI GAWTC 2 cut(s) 97, 299
PmaCI CACGTG 1 cut(s) 236
PmlI CACGTG 1 cut(s) 236
Ppu21I YACGTR 1 cut(s) 236
Psp6I CCWGG 1 cut(s) 217
PspCI CACGTG 1 cut(s) 236
PspGI CCWGG 1 cut(s) 217
PspN4I GGNNCC 3 cut(s) 67, 249, 250
PspOMI GGGCCC 2 cut(s) 65, 248
PspPI GGNCC 4 cut(s) 65, 66, 248, 249
PspXI VCTCGAGB 1 cut(s) 357
RsaI GTAC 3 cut(s) 7, 58, 198
RsaNI GTAC 3 cut(s) 6, 57, 197
RseI CAYNNNNRTG 2 cut(s) 74, 220
SapI GCTCTTC 1 cut(s) 170
SaqAI TTAA 1 cut(s) 203
Sau96I GGNCC 4 cut(s) 65, 66, 248, 249
ScrFI CCNGG 1 cut(s) 219
SduI GDGCHC 3 cut(s) 69, 241, 252
SetI ASST 9 cut(s) 49, 131, 155, 211, 220, 238, 275, 334, 373
SfaNI GCATC 1 cut(s) 175
SfcI CTRYAG 1 cut(s) 60
Sfr274I CTCGAG 1 cut(s) 357
SlaI CTCGAG 1 cut(s) 357
SmiMI CAYNNNNRTG 2 cut(s) 74, 220
SmlI CTYRAG 1 cut(s) 357
SmoI CTYRAG 1 cut(s) 357
Sse9I AATT 1 cut(s) 83
StyD4I CCNGG 1 cut(s) 217
StyI CCWWGG 1 cut(s) 91
TaaI ACNGT 3 cut(s) 201, 290, 317
TaiI ACGT 3 cut(s) 49, 238, 373
TaqI TCGA 1 cut(s) 358
TasI AATT 1 cut(s) 83
TfiI GAWTC 2 cut(s) 97, 299
Tru1I TTAA 1 cut(s) 203
Tru9I TTAA 1 cut(s) 203
TscAI CASTG 2 cut(s) 58, 149
TspRI CASTG 2 cut(s) 58, 149
XapI RAATTY 1 cut(s) 83
XhoI CTCGAG 1 cut(s) 357
XmnI GAANNNNTTC 2 cut(s) 83, 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.