Rh3CG332800

RNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0015743
Physical Location & Seq
Forward (+)
37073414 .. 37073758
345 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG332800.1

Sequence Viewer

Length: 345 bp
ATGGAGCCCGACGGCGCAGCGCCGATGCAAGTCGAGTCCGCGGCGGACAAAAGCCCTAACTCGGAGCTCCCTCCCAAATCCAGAGAAGAAGGCGAGCTCTCTTCGGATGATAATGACGTAAGATTATTACTCTCCCCAAACCCTAGCCCCATCTGCAACTTGTGTGTTGATTTTTGGTTCTTGATTATTATCTGTTTGAGCTTGTTGTTTCAGTGCATGAGTATTGTGTATAGATTTGGGGAAATTCTGGAAATTAGAATCGGATTTTTGATGTTAGATTGTTTCAGTTCCTGGATATTGGAGTTTACTTTAGCTTGGGTAACTTATAGGATTAGATTCGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3H1

Protein Analysis

114

Amino Acids

13.06

Weight (kDa)

4.31

Isoelectric Point (pI)

40.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 41
AciI CCGC 3 cut(s) 39, 41, 44
AcsI RAATTY 1 cut(s) 243
AfiI CCNNNNNNNGG 1 cut(s) 61
AjnI CCWGG 1 cut(s) 290
AluBI AGCT 4 cut(s) 67, 97, 201, 314
AluI AGCT 4 cut(s) 67, 97, 201, 314
Alw21I GWGCWC 2 cut(s) 69, 99
AlwNI CAGNNNCTG 1 cut(s) 291
ApeKI GCWGC 1 cut(s) 17
ApoI RAATTY 1 cut(s) 243
AspLEI GCGC 2 cut(s) 17, 22
BanII GRGCYC 3 cut(s) 9, 69, 99
Bbv12I GWGCWC 2 cut(s) 69, 99
BbvI GCAGC 1 cut(s) 29
BccI CCATC 1 cut(s) 158
BceAI ACGGC 1 cut(s) 28
BciT130I CCWGG 1 cut(s) 292
BfaI CTAG 1 cut(s) 144
BfoI RGCGCY 1 cut(s) 23
BisI GCNGC 2 cut(s) 18, 42
BlsI GCNGC 2 cut(s) 19, 43
Bme1390I CCNGG 1 cut(s) 292
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 292
BmsI GCATC 1 cut(s) 15
BsaBI GATNNNNATC 1 cut(s) 188
BsaJI CCNNGG 1 cut(s) 39
Bsc4I CCNNNNNNNGG 1 cut(s) 61
Bse8I GATNNNNATC 1 cut(s) 188
BseBI CCWGG 1 cut(s) 292
BseDI CCNNGG 1 cut(s) 39
BseGI GGATG 1 cut(s) 112
BseJI GATNNNNATC 1 cut(s) 188
BseLI CCNNNNNNNGG 1 cut(s) 61
BseXI GCAGC 1 cut(s) 29
Bsh1236I CGCG 1 cut(s) 41
BsiHKAI GWGCWC 2 cut(s) 69, 99
BslI CCNNNNNNNGG 1 cut(s) 61
Bsp1286I GDGCHC 3 cut(s) 9, 69, 99
BspACI CCGC 3 cut(s) 39, 41, 44
BspFNI CGCG 1 cut(s) 41
BspLI GGNNCC 1 cut(s) 6
BssECI CCNNGG 1 cut(s) 39
Bst2UI CCWGG 1 cut(s) 292
Bst6I CTCTTC 1 cut(s) 106
BstC8I GCNNGC 1 cut(s) 95
BstDSI CCRYGG 1 cut(s) 39
BstF5I GGATG 1 cut(s) 112
BstFNI CGCG 1 cut(s) 41
BstH2I RGCGCY 1 cut(s) 23
BstHHI GCGC 2 cut(s) 17, 22
BstMWI GCNNNNNNNGC 1 cut(s) 153
BstNI CCWGG 1 cut(s) 292
BstSCI CCNGG 1 cut(s) 290
BstUI CGCG 1 cut(s) 41
BstV1I GCAGC 1 cut(s) 29
BtgI CCRYGG 1 cut(s) 39
BtsCI GGATG 1 cut(s) 112
BtsIMutI CAGTG 1 cut(s) 218
Cac8I GCNNGC 1 cut(s) 95
CaiI CAGNNNCTG 1 cut(s) 291
CfoI GCGC 2 cut(s) 17, 22
Cfr42I CCGCGG 1 cut(s) 42
CviAII CATG 1 cut(s) 217
CviJI RGCY 7 cut(s) 7, 54, 67, 97, 147, 201, 314
CviKI_1 RGCY 7 cut(s) 7, 54, 67, 97, 147, 201, 314
Eam1104I CTCTTC 1 cut(s) 106
EarI CTCTTC 1 cut(s) 106
EciI GGCGGA 1 cut(s) 59
Ecl136II GAGCTC 2 cut(s) 67, 97
Eco24I GRGCYC 3 cut(s) 9, 69, 99
Eco53kI GAGCTC 2 cut(s) 67, 97
EcoICRI GAGCTC 2 cut(s) 67, 97
EcoRII CCWGG 1 cut(s) 290
EcoT38I GRGCYC 3 cut(s) 9, 69, 99
FaeI CATG 1 cut(s) 220
FaiI YATR 3 cut(s) 218, 231, 327
FatI CATG 1 cut(s) 216
Fnu4HI GCNGC 2 cut(s) 18, 42
FokI GGATG 1 cut(s) 119
FriOI GRGCYC 3 cut(s) 9, 69, 99
Fsp4HI GCNGC 2 cut(s) 18, 42
FspBI CTAG 1 cut(s) 144
GlaI GCGC 2 cut(s) 16, 21
GluI GCNGC 2 cut(s) 18, 42
HaeII RGCGCY 1 cut(s) 23
HhaI GCGC 2 cut(s) 17, 22
Hin1II CATG 1 cut(s) 220
Hin6I GCGC 2 cut(s) 15, 20
HinP1I GCGC 2 cut(s) 15, 20
HinfI GANTC 3 cut(s) 35, 258, 336
Hpy166II GTNNAC 1 cut(s) 306
Hpy188I TCNGA 3 cut(s) 64, 106, 263
Hpy188III TCNNGA 3 cut(s) 81, 181, 248
Hpy8I GTNNAC 1 cut(s) 306
Hpy99I CGWCG 1 cut(s) 14
HpyAV CCTTC 1 cut(s) 83
HpyCH4IV ACGT 1 cut(s) 117
HpyCH4V TGCA 3 cut(s) 28, 156, 216
HpyF10VI GCNNNNNNNGC 1 cut(s) 153
HpySE526I ACGT 1 cut(s) 117
Hsp92II CATG 1 cut(s) 220
HspAI GCGC 2 cut(s) 15, 20
KspI CCGCGG 1 cut(s) 42
LmnI GCTCC 3 cut(s) 4, 64, 72
LpnPI CCDG 4 cut(s) 94, 233, 277, 304
Lsp1109I GCAGC 1 cut(s) 29
LweI GCATC 1 cut(s) 15
MaeI CTAG 1 cut(s) 144
MaeII ACGT 1 cut(s) 117
MaeIII GTNAC 1 cut(s) 319
MboII GAAGA 2 cut(s) 93, 98
MhlI GDGCHC 3 cut(s) 9, 69, 99
MluCI AATT 2 cut(s) 243, 252
MlyI GAGTC 1 cut(s) 44
MnlI CCTC 1 cut(s) 81
MspA1I CMGCKG 1 cut(s) 41
MspR9I CCNGG 1 cut(s) 292
MteI GCGCNGCGC 1 cut(s) 18
MvaI CCWGG 1 cut(s) 292
MvnI CGCG 1 cut(s) 41
MwoI GCNNNNNNNGC 1 cut(s) 153
NlaIII CATG 1 cut(s) 220
NlaIV GGNNCC 1 cut(s) 6
PfeI GAWTC 2 cut(s) 258, 336
PfoI TCCNGGA 1 cut(s) 290
PkrI GCNGC 2 cut(s) 19, 43
PleI GAGTC 1 cut(s) 43
PpsI GAGTC 1 cut(s) 43
Psp124BI GAGCTC 2 cut(s) 69, 99
Psp6I CCWGG 1 cut(s) 290
PspGI CCWGG 1 cut(s) 290
PspN4I GGNNCC 1 cut(s) 6
PstNI CAGNNNCTG 1 cut(s) 291
SacI GAGCTC 2 cut(s) 69, 99
SacII CCGCGG 1 cut(s) 42
SatI GCNGC 2 cut(s) 18, 42
SchI GAGTC 1 cut(s) 44
ScrFI CCNGG 1 cut(s) 292
SduI GDGCHC 3 cut(s) 9, 69, 99
SetI ASST 5 cut(s) 69, 99, 120, 203, 316
SfaNI GCATC 1 cut(s) 15
Sfr303I CCGCGG 1 cut(s) 42
SgrBI CCGCGG 1 cut(s) 42
Sse9I AATT 2 cut(s) 243, 252
SsiI CCGC 3 cut(s) 39, 41, 44
SspMI CTAG 1 cut(s) 144
SstI GAGCTC 2 cut(s) 69, 99
StyD4I CCNGG 1 cut(s) 290
TaiI ACGT 1 cut(s) 120
TaqI TCGA 2 cut(s) 33, 339
TasI AATT 2 cut(s) 243, 252
TauI GCSGC 1 cut(s) 44
TfiI GAWTC 2 cut(s) 258, 336
TscAI CASTG 1 cut(s) 218
TseI GCWGC 1 cut(s) 17
TspRI CASTG 1 cut(s) 218
XapI RAATTY 1 cut(s) 243
XspI CTAG 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.