Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023760.1

Orthogroup ID

OG0015743

Physical Location & Seq

Genomic Coordinates Reverse (-)

8702 .. 9268

Gene Structure 567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023760.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ctgtcccctcttctcactcctcttcttttcgtctctgtttctcttccccctcctgcaacttgcccaacaccagtgttcctttgcgcaagctctgctgatattcagtgccaaacctccaagcaatctacttcccagaagagcaatgatgcgaacagagtaccgttaaaacctgctacacctggatggcgtcctccacgtgcccactcggggcccaacaataatcttgtgataagcttctcagatgatgacagtcagagtgattctgaagaaacagaccgtgggaaactaaaagctttacaaactaaaagtaatatggctcgagggaatgctaatggaaaaccacccatttcttcacttgcaaaaccaaacaagttgggacagcctgccagaaatgtgaataaagtaatgcccaaaaagttgtctatgaatcgcacatttatgacatcaatggcgaatatccgtggagttaattctagagattctgtgccttcatcagttgagcaaggatctcgagctggaaatttcaattccagcaacaaaaatatagtgaacagagagcgattataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3H1

Protein Analysis

188

Amino Acids

20.21

Weight (kDa)

10.33

Isoelectric Point (pI)

52.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015743)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0492191
rosa_laevigata	RLG00000022821 RLG00000022828
rosa_multiflora	Rmu_sc0009049.1_g000012 Rmu_sc0009109.1_g000004 Rmu_sc0014853.1_g000001 Rmu_sc0020121.1_g000002 Rmu_sc0023760.1_g000002
rosa_roxburghii	Rroxscaffold_6G00388500
rosa_rugosa	Rorug02G0268100
rosa_samantha	Rh3AG295300 Rh3AG302400 Rh3CG332800 Rh3CG332900 Rh3DG334800 Rh6AG108000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	565
Acc16I	TGCGCA	1 cut(s)	85
Acc36I	ACCTGC	1 cut(s)	178
AclWI	GGATC	1 cut(s)	514
AcsI	RAATTY	1 cut(s)	520
AcuI	CTGAAG	1 cut(s)	285
AcvI	CACGTG	1 cut(s)	197
AcyI	GRCGYC	1 cut(s)	187
AfaI	GTAC	1 cut(s)	159
AfiI	CCNNNNNNNGG	1 cut(s)	207
AgsI	TTSAA	1 cut(s)	526
AjnI	CCWGG	1 cut(s)	178
AluBI	AGCT	4 cut(s)	90, 234, 293, 515
AluI	AGCT	4 cut(s)	90, 234, 293, 515
Alw26I	GTCTC	1 cut(s)	37
AlwI	GGATC	1 cut(s)	514
Ama87I	CYCGRG	3 cut(s)	205, 318, 510
AoxI	GGCC	1 cut(s)	209
ApaI	GGGCCC	1 cut(s)	213
ApoI	RAATTY	1 cut(s)	520
AspLEI	GCGC	1 cut(s)	86
AspS9I	GGNCC	2 cut(s)	209, 210
AvaI	CYCGRG	3 cut(s)	205, 318, 510
BaeGI	GKGCMC	2 cut(s)	202, 213
BanII	GRGCYC	1 cut(s)	213
BbrPI	CACGTG	1 cut(s)	197
BccI	CCATC	1 cut(s)	177
BcgI	CGANNNNNNTGC	2 cut(s)	491, 525
BciT130I	CCWGG	1 cut(s)	180
BcoDI	GTCTC	1 cut(s)	37
BfaI	CTAG	1 cut(s)	474
BfuAI	ACCTGC	1 cut(s)	178
Bme1390I	CCNGG	1 cut(s)	180
BmeT110I	CYCGRG	3 cut(s)	205, 318, 510
BmgT120I	GGNCC	2 cut(s)	209, 210
BmiI	GGNNCC	2 cut(s)	210, 211
BmrFI	CCNGG	1 cut(s)	180
BmsI	GCATC	1 cut(s)	136
BsaAI	YACGTR	1 cut(s)	197
BsaHI	GRCGYC	1 cut(s)	187
BsaJI	CCNNGG	2 cut(s)	277, 460
Bsc4I	CCNNNNNNNGG	1 cut(s)	207
Bse1I	ACTGG	1 cut(s)	71
Bse3DI	GCAATG	1 cut(s)	148
BseBI	CCWGG	1 cut(s)	180
BseDI	CCNNGG	2 cut(s)	277, 460
BseGI	GGATG	1 cut(s)	188
BseLI	CCNNNNNNNGG	1 cut(s)	207
BseMI	GCAATG	1 cut(s)	148
BseMII	CTCAG	1 cut(s)	252
BseNI	ACTGG	1 cut(s)	71
BseRI	GAGGAG	1 cut(s)	9
BseSI	GKGCMC	2 cut(s)	202, 213
BshFI	GGCC	1 cut(s)	211
BsiHKCI	CYCGRG	3 cut(s)	205, 318, 510
BslFI	GGGAC	1 cut(s)	390
BslI	CCNNNNNNNGG	1 cut(s)	207
BsmAI	GTCTC	1 cut(s)	37
BsmBI	CGTCTC	1 cut(s)	37
BsmFI	GGGAC	1 cut(s)	390
BsmI	GAATGC	1 cut(s)	331
BsnI	GGCC	1 cut(s)	211
BsoBI	CYCGRG	3 cut(s)	205, 318, 510
Bsp120I	GGGCCC	1 cut(s)	209
Bsp1286I	GDGCHC	2 cut(s)	202, 213
Bsp143I	GATC	1 cut(s)	506
BspANI	GGCC	1 cut(s)	211
BspCNI	CTCAG	1 cut(s)	251
BspLI	GGNNCC	2 cut(s)	210, 211
BspMI	ACCTGC	1 cut(s)	178
BspPI	GGATC	1 cut(s)	514
BspQI	GCTCTTC	1 cut(s)	131
BsrDI	GCAATG	1 cut(s)	148
BsrI	ACTGG	1 cut(s)	71
BssECI	CCNNGG	2 cut(s)	277, 460
BssMI	GATC	1 cut(s)	506
BssNI	GRCGYC	1 cut(s)	187
Bst2UI	CCWGG	1 cut(s)	180
Bst4CI	ACNGT	3 cut(s)	162, 251, 278
Bst6I	CTCTTC	4 cut(s)	15, 27, 48, 131
BstACI	GRCGYC	1 cut(s)	187
BstAPI	GCANNNNNTGC	1 cut(s)	92
BstBAI	YACGTR	1 cut(s)	197
BstC8I	GCNNGC	2 cut(s)	88, 384
BstDEI	CTNAG	1 cut(s)	238
BstDSI	CCRYGG	2 cut(s)	277, 460
BstF5I	GGATG	1 cut(s)	188
BstHHI	GCGC	1 cut(s)	86
BstKTI	GATC	1 cut(s)	509
BstMAI	GTCTC	1 cut(s)	37
BstMBI	GATC	1 cut(s)	506
BstMWI	GCNNNNNNNGC	1 cut(s)	92
BstNI	CCWGG	1 cut(s)	180
BstSCI	CCNGG	1 cut(s)	178
BstSLI	GKGCMC	2 cut(s)	202, 213
BstX2I	RGATCY	1 cut(s)	506
BstYI	RGATCY	1 cut(s)	506
BsuRI	GGCC	1 cut(s)	211
BtgI	CCRYGG	2 cut(s)	277, 460
BtsCI	GGATG	1 cut(s)	188
BtsIMutI	CAGTG	2 cut(s)	78, 110
BveI	ACCTGC	1 cut(s)	178
Cac8I	GCNNGC	2 cut(s)	88, 384
CfoI	GCGC	1 cut(s)	86
Cfr13I	GGNCC	2 cut(s)	209, 210
CseI	GACGC	1 cut(s)	176
Csp6I	GTAC	1 cut(s)	158
CviJI	RGCY	7 cut(s)	90, 211, 234, 293, 317, 382, 515
CviKI_1	RGCY	7 cut(s)	90, 211, 234, 293, 317, 382, 515
CviQI	GTAC	1 cut(s)	158
DdeI	CTNAG	1 cut(s)	238
DpnI	GATC	1 cut(s)	508
DpnII	GATC	1 cut(s)	506
Eam1104I	CTCTTC	4 cut(s)	15, 27, 48, 131
EarI	CTCTTC	4 cut(s)	15, 27, 48, 131
Eco24I	GRGCYC	1 cut(s)	213
Eco57I	CTGAAG	1 cut(s)	285
Eco72I	CACGTG	1 cut(s)	197
Eco88I	CYCGRG	3 cut(s)	205, 318, 510
EcoO109I	RGGNCCY	1 cut(s)	209
EcoRII	CCWGG	1 cut(s)	178
EcoT38I	GRGCYC	1 cut(s)	213
Esp3I	CGTCTC	1 cut(s)	37
FaiI	YATR	5 cut(s)	314, 425, 440, 545, 565
FaqI	GGGAC	1 cut(s)	390
FokI	GGATG	1 cut(s)	195
FriOI	GRGCYC	1 cut(s)	213
FspBI	CTAG	1 cut(s)	474
FspI	TGCGCA	1 cut(s)	85
GlaI	GCGC	1 cut(s)	85
HaeIII	GGCC	1 cut(s)	211
HgaI	GACGC	1 cut(s)	176
HhaI	GCGC	1 cut(s)	86
Hin1I	GRCGYC	1 cut(s)	187
Hin6I	GCGC	1 cut(s)	84
HinP1I	GCGC	1 cut(s)	84
HindIII	AAGCTT	2 cut(s)	232, 291
HinfI	GANTC	3 cut(s)	260, 427, 479
Hpy166II	GTNNAC	1 cut(s)	550
Hpy188I	TCNGA	3 cut(s)	241, 255, 265
Hpy188III	TCNNGA	2 cut(s)	474, 510
Hpy8I	GTNNAC	1 cut(s)	550
HpyAV	CCTTC	1 cut(s)	498
HpyCH4III	ACNGT	3 cut(s)	162, 251, 278
HpyCH4IV	ACGT	1 cut(s)	196
HpyCH4V	TGCA	2 cut(s)	56, 359
HpyF10VI	GCNNNNNNNGC	1 cut(s)	92
HpyF3I	CTNAG	1 cut(s)	238
HpySE526I	ACGT	1 cut(s)	196
Hsp92I	GRCGYC	1 cut(s)	187
HspAI	GCGC	1 cut(s)	84
Kzo9I	GATC	1 cut(s)	506
LguI	GCTCTTC	1 cut(s)	131
LweI	GCATC	1 cut(s)	136
MaeI	CTAG	1 cut(s)	474
MaeII	ACGT	1 cut(s)	196
MalI	GATC	1 cut(s)	508
MboI	GATC	1 cut(s)	506
MboII	GAAGA	5 cut(s)	14, 35, 148, 278, 342
MflI	RGATCY	1 cut(s)	506
MhlI	GDGCHC	2 cut(s)	202, 213
MluCI	AATT	3 cut(s)	469, 520, 526
MnlI	CCTC	6 cut(s)	18, 30, 60, 124, 201, 314
MseI	TTAA	2 cut(s)	164, 468
MslI	CAYNNNNRTG	2 cut(s)	181, 437
MspR9I	CCNGG	1 cut(s)	180
Mva1269I	GAATGC	1 cut(s)	331
MvaI	CCWGG	1 cut(s)	180
MwoI	GCNNNNNNNGC	1 cut(s)	92
NdeII	GATC	1 cut(s)	506
NlaIV	GGNNCC	2 cut(s)	210, 211
NsbI	TGCGCA	1 cut(s)	85
PaeR7I	CTCGAG	2 cut(s)	318, 510
PciSI	GCTCTTC	1 cut(s)	131
PctI	GAATGC	1 cut(s)	331
PfeI	GAWTC	3 cut(s)	260, 427, 479
PmaCI	CACGTG	1 cut(s)	197
PmlI	CACGTG	1 cut(s)	197
Ppu21I	YACGTR	1 cut(s)	197
PsiI	TTATAA	1 cut(s)	565
Psp6I	CCWGG	1 cut(s)	178
PspCI	CACGTG	1 cut(s)	197
PspGI	CCWGG	1 cut(s)	178
PspN4I	GGNNCC	2 cut(s)	210, 211
PspOMI	GGGCCC	1 cut(s)	209
PspPI	GGNCC	2 cut(s)	209, 210
PspXI	VCTCGAGB	1 cut(s)	318
PsuI	RGATCY	1 cut(s)	506
RsaI	GTAC	1 cut(s)	159
RsaNI	GTAC	1 cut(s)	158
RseI	CAYNNNNRTG	2 cut(s)	181, 437
SapI	GCTCTTC	1 cut(s)	131
SaqAI	TTAA	2 cut(s)	164, 468
Sau3AI	GATC	1 cut(s)	506
Sau96I	GGNCC	2 cut(s)	209, 210
ScrFI	CCNGG	1 cut(s)	180
SduI	GDGCHC	2 cut(s)	202, 213
SetI	ASST	8 cut(s)	92, 116, 172, 181, 199, 236, 295, 517
SfaNI	GCATC	1 cut(s)	136
Sfr274I	CTCGAG	2 cut(s)	318, 510
SlaI	CTCGAG	2 cut(s)	318, 510
SmiMI	CAYNNNNRTG	2 cut(s)	181, 437
SmlI	CTYRAG	2 cut(s)	318, 510
SmoI	CTYRAG	2 cut(s)	318, 510
Sse9I	AATT	3 cut(s)	469, 520, 526
SspMI	CTAG	1 cut(s)	474
StyD4I	CCNGG	1 cut(s)	178
TaaI	ACNGT	3 cut(s)	162, 251, 278
TaiI	ACGT	1 cut(s)	199
TaqI	TCGA	2 cut(s)	319, 511
TasI	AATT	3 cut(s)	469, 520, 526
TfiI	GAWTC	3 cut(s)	260, 427, 479
Tru1I	TTAA	2 cut(s)	164, 468
Tru9I	TTAA	2 cut(s)	164, 468
TscAI	CASTG	2 cut(s)	78, 110
TspDTI	ATGAA	2 cut(s)	440, 480
TspGWI	ACGGA	1 cut(s)	449
TspRI	CASTG	2 cut(s)	78, 110
XapI	RAATTY	1 cut(s)	520
XbaI	TCTAGA	1 cut(s)	473
XhoI	CTCGAG	2 cut(s)	318, 510
XspI	CTAG	1 cut(s)	474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.