RLG00000022828

RNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0015743
Physical Location & Seq
Reverse (-)
12808109 .. 12809703
1595 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022828

Sequence Viewer

Length: 702 bp
ATGGAGCCCGACGGCGCAGCGCCGATGCAAGTCGAGTCCGCGGCGGACAAAAGCCCTAACTCGGAGCTCCCTCCCAAATCCAGAGAAGAAGGCGAGCTCTCTTCGGATGATAATGACGAAAATCCAGTTCTCTCGATTGCACGTTCCACTGGTACTACAGGGCCCATGCTGGTGAACAAATTCACCCATGGGAATCAAATGGGGAAGGCTGTATCTCCTGCAAGCTCTGCTGATATTCAGTGCCAAACCTCCAAGCAATCTACTTCCCAGAAGAGCAATGATGCGAACAGAGTACCGTTAAAACCTGCTACACCTGGATGGCGTCCTCCACGTGCCCACTCGGGGCCCAACAATAATCTTGTGATAAGCTTCTCAGATGATGACAGTCAGAGTGATTCTGAAGAAACAGACCGTGGGAAACTAAAAGCTTTACAAACTAAAAGTAATATGGCTCGAGGGAATGCTAATGGAAAACCACCCATTTCTTCACTTCCAAAACCAAACAAGTTGGGACAGCCTGCCAGAAATATGAATAAAGTAATGCCCAAAAAGTTGTCTATGAATCGCACATTTATGACATCAATGGCGAATATCCGTGGAGTTAATTCTAGAGATTCTGTGCCTTCATCAGTTGAGCAAGGATCTCGAGCTGGAAATTTCAATTCCGGCAACAAAAATATAGTGAACAGAGAGCGATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3H1

Protein Analysis

234

Amino Acids

24.97

Weight (kDa)

9.64

Isoelectric Point (pI)

47.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 700
Acc36I ACCTGC 1 cut(s) 313
AccII CGCG 1 cut(s) 41
AciI CCGC 3 cut(s) 39, 41, 44
AclWI GGATC 1 cut(s) 649
AcsI RAATTY 2 cut(s) 179, 655
AcuI CTGAAG 1 cut(s) 420
AcvI CACGTG 1 cut(s) 332
AcyI GRCGYC 1 cut(s) 322
AfaI GTAC 2 cut(s) 154, 294
AfiI CCNNNNNNNGG 2 cut(s) 61, 342
AgsI TTSAA 1 cut(s) 661
AjnI CCWGG 1 cut(s) 313
AluBI AGCT 6 cut(s) 67, 97, 225, 369, 428, 650
AluI AGCT 6 cut(s) 67, 97, 225, 369, 428, 650
Alw21I GWGCWC 2 cut(s) 69, 99
AlwI GGATC 1 cut(s) 649
Ama87I CYCGRG 3 cut(s) 340, 453, 645
AoxI GGCC 2 cut(s) 161, 344
ApaI GGGCCC 2 cut(s) 165, 348
ApeKI GCWGC 1 cut(s) 17
ApoI RAATTY 2 cut(s) 179, 655
Asp700I GAANNNNTTC 1 cut(s) 179
AspLEI GCGC 2 cut(s) 17, 22
AspS9I GGNCC 4 cut(s) 161, 162, 344, 345
AsuHPI GGTGA 2 cut(s) 175, 184
AvaI CYCGRG 3 cut(s) 340, 453, 645
BaeGI GKGCMC 3 cut(s) 165, 337, 348
BanII GRGCYC 5 cut(s) 9, 69, 99, 165, 348
BbrPI CACGTG 1 cut(s) 332
Bbv12I GWGCWC 2 cut(s) 69, 99
BbvI GCAGC 1 cut(s) 29
BccI CCATC 1 cut(s) 312
BceAI ACGGC 1 cut(s) 28
BcgI CGANNNNNNTGC 2 cut(s) 626, 660
BciT130I CCWGG 1 cut(s) 315
BfaI CTAG 1 cut(s) 609
BfmI CTRYAG 1 cut(s) 156
BfoI RGCGCY 1 cut(s) 23
BfuAI ACCTGC 1 cut(s) 313
BisI GCNGC 2 cut(s) 18, 42
BlsI GCNGC 2 cut(s) 19, 43
Bme1390I CCNGG 1 cut(s) 315
BmeT110I CYCGRG 3 cut(s) 340, 453, 645
BmgT120I GGNCC 4 cut(s) 161, 162, 344, 345
BmiI GGNNCC 4 cut(s) 6, 163, 345, 346
BmrFI CCNGG 1 cut(s) 315
BmsI GCATC 2 cut(s) 15, 271
BsaAI YACGTR 1 cut(s) 332
BsaHI GRCGYC 1 cut(s) 322
BsaJI CCNNGG 4 cut(s) 39, 187, 412, 595
Bsc4I CCNNNNNNNGG 2 cut(s) 61, 342
Bse1I ACTGG 2 cut(s) 125, 154
Bse3DI GCAATG 1 cut(s) 283
BseBI CCWGG 1 cut(s) 315
BseDI CCNNGG 4 cut(s) 39, 187, 412, 595
BseGI GGATG 2 cut(s) 112, 323
BseLI CCNNNNNNNGG 2 cut(s) 61, 342
BseMI GCAATG 1 cut(s) 283
BseMII CTCAG 1 cut(s) 387
BseNI ACTGG 2 cut(s) 125, 154
BseSI GKGCMC 3 cut(s) 165, 337, 348
BseXI GCAGC 1 cut(s) 29
Bsh1236I CGCG 1 cut(s) 41
BshFI GGCC 2 cut(s) 163, 346
BsiHKAI GWGCWC 2 cut(s) 69, 99
BsiHKCI CYCGRG 3 cut(s) 340, 453, 645
BsiSI CCGG 1 cut(s) 666
BslFI GGGAC 1 cut(s) 525
BslI CCNNNNNNNGG 2 cut(s) 61, 342
BsmFI GGGAC 1 cut(s) 525
BsmI GAATGC 1 cut(s) 466
BsnI GGCC 2 cut(s) 163, 346
BsoBI CYCGRG 3 cut(s) 340, 453, 645
Bsp120I GGGCCC 2 cut(s) 161, 344
Bsp1286I GDGCHC 6 cut(s) 9, 69, 99, 165, 337, 348
Bsp143I GATC 1 cut(s) 641
Bsp19I CCATGG 1 cut(s) 187
BspACI CCGC 3 cut(s) 39, 41, 44
BspANI GGCC 2 cut(s) 163, 346
BspCNI CTCAG 1 cut(s) 386
BspFNI CGCG 1 cut(s) 41
BspLI GGNNCC 4 cut(s) 6, 163, 345, 346
BspMI ACCTGC 1 cut(s) 313
BspPI GGATC 1 cut(s) 649
BspQI GCTCTTC 1 cut(s) 266
BsrDI GCAATG 1 cut(s) 283
BsrI ACTGG 2 cut(s) 125, 154
BssECI CCNNGG 4 cut(s) 39, 187, 412, 595
BssMI GATC 1 cut(s) 641
BssNI GRCGYC 1 cut(s) 322
BssT1I CCWWGG 1 cut(s) 187
Bst2UI CCWGG 1 cut(s) 315
Bst4CI ACNGT 3 cut(s) 297, 386, 413
Bst6I CTCTTC 2 cut(s) 106, 266
BstACI GRCGYC 1 cut(s) 322
BstAPI GCANNNNNTGC 1 cut(s) 227
BstBAI YACGTR 1 cut(s) 332
BstC8I GCNNGC 3 cut(s) 95, 223, 519
BstDEI CTNAG 1 cut(s) 373
BstDSI CCRYGG 4 cut(s) 39, 187, 412, 595
BstF5I GGATG 2 cut(s) 112, 323
BstFNI CGCG 1 cut(s) 41
BstH2I RGCGCY 1 cut(s) 23
BstHHI GCGC 2 cut(s) 17, 22
BstKTI GATC 1 cut(s) 644
BstMBI GATC 1 cut(s) 641
BstMWI GCNNNNNNNGC 1 cut(s) 227
BstNI CCWGG 1 cut(s) 315
BstSCI CCNGG 1 cut(s) 313
BstSFI CTRYAG 1 cut(s) 156
BstSLI GKGCMC 3 cut(s) 165, 337, 348
BstUI CGCG 1 cut(s) 41
BstV1I GCAGC 1 cut(s) 29
BstX2I RGATCY 1 cut(s) 641
BstYI RGATCY 1 cut(s) 641
BsuRI GGCC 2 cut(s) 163, 346
BtgI CCRYGG 4 cut(s) 39, 187, 412, 595
BtsCI GGATG 2 cut(s) 112, 323
BtsIMutI CAGTG 2 cut(s) 147, 245
BveI ACCTGC 1 cut(s) 313
Cac8I GCNNGC 3 cut(s) 95, 223, 519
CfoI GCGC 2 cut(s) 17, 22
Cfr13I GGNCC 4 cut(s) 161, 162, 344, 345
Cfr42I CCGCGG 1 cut(s) 42
CseI GACGC 1 cut(s) 311
Csp6I GTAC 2 cut(s) 153, 293
CviAII CATG 2 cut(s) 166, 188
CviQI GTAC 2 cut(s) 153, 293
DdeI CTNAG 1 cut(s) 373
DpnI GATC 1 cut(s) 643
DpnII GATC 1 cut(s) 641
Eam1104I CTCTTC 2 cut(s) 106, 266
EarI CTCTTC 2 cut(s) 106, 266
EciI GGCGGA 1 cut(s) 59
Ecl136II GAGCTC 2 cut(s) 67, 97
Eco130I CCWWGG 1 cut(s) 187
Eco24I GRGCYC 5 cut(s) 9, 69, 99, 165, 348
Eco53kI GAGCTC 2 cut(s) 67, 97
Eco57I CTGAAG 1 cut(s) 420
Eco72I CACGTG 1 cut(s) 332
Eco88I CYCGRG 3 cut(s) 340, 453, 645
EcoICRI GAGCTC 2 cut(s) 67, 97
EcoO109I RGGNCCY 2 cut(s) 161, 344
EcoRII CCWGG 1 cut(s) 313
EcoT14I CCWWGG 1 cut(s) 187
EcoT38I GRGCYC 5 cut(s) 9, 69, 99, 165, 348
ErhI CCWWGG 1 cut(s) 187
FaeI CATG 2 cut(s) 169, 191
FaiI YATR 8 cut(s) 167, 189, 449, 530, 560, 575, 680, 700
FaqI GGGAC 1 cut(s) 525
FatI CATG 2 cut(s) 165, 187
Fnu4HI GCNGC 2 cut(s) 18, 42
FokI GGATG 2 cut(s) 119, 330
FriOI GRGCYC 5 cut(s) 9, 69, 99, 165, 348
Fsp4HI GCNGC 2 cut(s) 18, 42
FspBI CTAG 1 cut(s) 609
GlaI GCGC 2 cut(s) 16, 21
GluI GCNGC 2 cut(s) 18, 42
HaeII RGCGCY 1 cut(s) 23
HaeIII GGCC 2 cut(s) 163, 346
HapII CCGG 1 cut(s) 666
HgaI GACGC 1 cut(s) 311
HhaI GCGC 2 cut(s) 17, 22
Hin1I GRCGYC 1 cut(s) 322
Hin1II CATG 2 cut(s) 169, 191
Hin6I GCGC 2 cut(s) 15, 20
HinP1I GCGC 2 cut(s) 15, 20
HindIII AAGCTT 2 cut(s) 367, 426
HinfI GANTC 5 cut(s) 35, 193, 395, 562, 614
HpaII CCGG 1 cut(s) 666
HphI GGTGA 2 cut(s) 175, 184
Hpy166II GTNNAC 2 cut(s) 175, 685
Hpy188I TCNGA 5 cut(s) 64, 106, 376, 390, 400
Hpy188III TCNNGA 4 cut(s) 81, 133, 609, 645
Hpy8I GTNNAC 2 cut(s) 175, 685
Hpy99I CGWCG 1 cut(s) 14
HpyAV CCTTC 3 cut(s) 83, 199, 633
HpyCH4III ACNGT 3 cut(s) 297, 386, 413
HpyCH4IV ACGT 2 cut(s) 142, 331
HpyCH4V TGCA 3 cut(s) 28, 140, 221
HpyF10VI GCNNNNNNNGC 1 cut(s) 227
HpyF3I CTNAG 1 cut(s) 373
HpySE526I ACGT 2 cut(s) 142, 331
Hsp92I GRCGYC 1 cut(s) 322
Hsp92II CATG 2 cut(s) 169, 191
HspAI GCGC 2 cut(s) 15, 20
KspI CCGCGG 1 cut(s) 42
Kzo9I GATC 1 cut(s) 641
LguI GCTCTTC 1 cut(s) 266
LmnI GCTCC 3 cut(s) 4, 64, 72
Lsp1109I GCAGC 1 cut(s) 29
LweI GCATC 2 cut(s) 15, 271
MaeI CTAG 1 cut(s) 609
MaeII ACGT 2 cut(s) 142, 331
MalI GATC 1 cut(s) 643
MboI GATC 1 cut(s) 641
MboII GAAGA 5 cut(s) 93, 98, 283, 413, 477
MflI RGATCY 1 cut(s) 641
MhlI GDGCHC 6 cut(s) 9, 69, 99, 165, 337, 348
MluCI AATT 4 cut(s) 179, 604, 655, 661
MlyI GAGTC 1 cut(s) 44
MnlI CCTC 4 cut(s) 81, 259, 336, 449
MroXI GAANNNNTTC 1 cut(s) 179
MseI TTAA 2 cut(s) 299, 603
MslI CAYNNNNRTG 3 cut(s) 170, 316, 572
MspA1I CMGCKG 1 cut(s) 41
MspI CCGG 1 cut(s) 666
MspR9I CCNGG 1 cut(s) 315
MteI GCGCNGCGC 1 cut(s) 18
Mva1269I GAATGC 1 cut(s) 466
MvaI CCWGG 1 cut(s) 315
MvnI CGCG 1 cut(s) 41
MwoI GCNNNNNNNGC 1 cut(s) 227
NcoI CCATGG 1 cut(s) 187
NdeII GATC 1 cut(s) 641
NlaIII CATG 2 cut(s) 169, 191
NlaIV GGNNCC 4 cut(s) 6, 163, 345, 346
PaeR7I CTCGAG 2 cut(s) 453, 645
PciSI GCTCTTC 1 cut(s) 266
PctI GAATGC 1 cut(s) 466
PdmI GAANNNNTTC 1 cut(s) 179
PfeI GAWTC 4 cut(s) 193, 395, 562, 614
PkrI GCNGC 2 cut(s) 19, 43
PleI GAGTC 1 cut(s) 43
PmaCI CACGTG 1 cut(s) 332
PmlI CACGTG 1 cut(s) 332
PpsI GAGTC 1 cut(s) 43
Ppu21I YACGTR 1 cut(s) 332
PsiI TTATAA 1 cut(s) 700
Psp124BI GAGCTC 2 cut(s) 69, 99
Psp6I CCWGG 1 cut(s) 313
PspCI CACGTG 1 cut(s) 332
PspGI CCWGG 1 cut(s) 313
PspN4I GGNNCC 4 cut(s) 6, 163, 345, 346
PspOMI GGGCCC 2 cut(s) 161, 344
PspPI GGNCC 4 cut(s) 161, 162, 344, 345
PspXI VCTCGAGB 1 cut(s) 453
PsuI RGATCY 1 cut(s) 641
RsaI GTAC 2 cut(s) 154, 294
RsaNI GTAC 2 cut(s) 153, 293
RseI CAYNNNNRTG 3 cut(s) 170, 316, 572
SacI GAGCTC 2 cut(s) 69, 99
SacII CCGCGG 1 cut(s) 42
SapI GCTCTTC 1 cut(s) 266
SaqAI TTAA 2 cut(s) 299, 603
SatI GCNGC 2 cut(s) 18, 42
Sau3AI GATC 1 cut(s) 641
Sau96I GGNCC 4 cut(s) 161, 162, 344, 345
SchI GAGTC 1 cut(s) 44
ScrFI CCNGG 1 cut(s) 315
SduI GDGCHC 6 cut(s) 9, 69, 99, 165, 337, 348
SfaNI GCATC 2 cut(s) 15, 271
SfcI CTRYAG 1 cut(s) 156
Sfr274I CTCGAG 2 cut(s) 453, 645
Sfr303I CCGCGG 1 cut(s) 42
SgrBI CCGCGG 1 cut(s) 42
SlaI CTCGAG 2 cut(s) 453, 645
SmiMI CAYNNNNRTG 3 cut(s) 170, 316, 572
SmlI CTYRAG 2 cut(s) 453, 645
SmoI CTYRAG 2 cut(s) 453, 645
Sse9I AATT 4 cut(s) 179, 604, 655, 661
SsiI CCGC 3 cut(s) 39, 41, 44
SspMI CTAG 1 cut(s) 609
SstI GAGCTC 2 cut(s) 69, 99
StyD4I CCNGG 1 cut(s) 313
StyI CCWWGG 1 cut(s) 187
TaaI ACNGT 3 cut(s) 297, 386, 413
TaiI ACGT 2 cut(s) 145, 334
TaqI TCGA 4 cut(s) 33, 134, 454, 646
TasI AATT 4 cut(s) 179, 604, 655, 661
TauI GCSGC 1 cut(s) 44
TfiI GAWTC 4 cut(s) 193, 395, 562, 614
Tru1I TTAA 2 cut(s) 299, 603
Tru9I TTAA 2 cut(s) 299, 603
TscAI CASTG 2 cut(s) 154, 245
TseI GCWGC 1 cut(s) 17
TspDTI ATGAA 3 cut(s) 545, 575, 615
TspGWI ACGGA 1 cut(s) 584
TspRI CASTG 2 cut(s) 154, 245
XapI RAATTY 2 cut(s) 179, 655
XbaI TCTAGA 1 cut(s) 608
XhoI CTCGAG 2 cut(s) 453, 645
XmnI GAANNNNTTC 1 cut(s) 179
XspI CTAG 1 cut(s) 609
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.