Rh3AG295300

RNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0015743
Physical Location & Seq
Forward (+)
35907974 .. 35908789
816 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG295300.1

Sequence Viewer

Length: 261 bp
ATGGAGCCCGACAGCGCAGCGCCGATGCAAGTCGAGTCCGCGGCGGACAAAAGCCCTAACTCGGAGCTCCCTCCCAAATCCAGAGAAGAAGGCGAGCTCTCTTCGGATGATAATGACGAAAATCCTGTTCTCTTGGTTGCACGTTCCACTGGTACTAAAAAATCATTAGGCTTTAATCTCTTCTTCCTCTCCCCCTTCAAATTCACCACCAAAGATGAAGGAAAAACTTCTTTGACGGTGGACGCCGTCATCAAGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3H1

Protein Analysis

86

Amino Acids

9.35

Weight (kDa)

4.59

Isoelectric Point (pI)

39.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 41
AciI CCGC 3 cut(s) 39, 41, 44
AcsI RAATTY 1 cut(s) 200
AcyI GRCGYC 1 cut(s) 243
AfaI GTAC 1 cut(s) 154
AfiI CCNNNNNNNGG 1 cut(s) 61
AgsI TTSAA 1 cut(s) 199
AluBI AGCT 2 cut(s) 67, 97
AluI AGCT 2 cut(s) 67, 97
Alw21I GWGCWC 2 cut(s) 69, 99
ApeKI GCWGC 1 cut(s) 17
ApoI RAATTY 1 cut(s) 200
Asp700I GAANNNNTTC 1 cut(s) 226
AspLEI GCGC 2 cut(s) 17, 22
AsuHPI GGTGA 1 cut(s) 196
BanII GRGCYC 3 cut(s) 9, 69, 99
Bbv12I GWGCWC 2 cut(s) 69, 99
BbvI GCAGC 1 cut(s) 29
BceAI ACGGC 1 cut(s) 230
BfoI RGCGCY 1 cut(s) 23
BisI GCNGC 2 cut(s) 18, 42
BlsI GCNGC 2 cut(s) 19, 43
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 1 cut(s) 15
BsaHI GRCGYC 1 cut(s) 243
BsaJI CCNNGG 1 cut(s) 39
Bsc4I CCNNNNNNNGG 1 cut(s) 61
Bse1I ACTGG 1 cut(s) 154
BseDI CCNNGG 1 cut(s) 39
BseGI GGATG 1 cut(s) 112
BseLI CCNNNNNNNGG 1 cut(s) 61
BseNI ACTGG 1 cut(s) 154
BseXI GCAGC 1 cut(s) 29
Bsh1236I CGCG 1 cut(s) 41
BsiHKAI GWGCWC 2 cut(s) 69, 99
BslI CCNNNNNNNGG 1 cut(s) 61
Bsp1286I GDGCHC 3 cut(s) 9, 69, 99
BspACI CCGC 3 cut(s) 39, 41, 44
BspFNI CGCG 1 cut(s) 41
BspLI GGNNCC 1 cut(s) 6
BsrI ACTGG 1 cut(s) 154
BssECI CCNNGG 1 cut(s) 39
BssNI GRCGYC 1 cut(s) 243
Bst4CI ACNGT 1 cut(s) 238
Bst6I CTCTTC 2 cut(s) 106, 185
BstACI GRCGYC 1 cut(s) 243
BstC8I GCNNGC 1 cut(s) 95
BstDSI CCRYGG 1 cut(s) 39
BstF5I GGATG 1 cut(s) 112
BstFNI CGCG 1 cut(s) 41
BstH2I RGCGCY 1 cut(s) 23
BstHHI GCGC 2 cut(s) 17, 22
BstUI CGCG 1 cut(s) 41
BstV1I GCAGC 1 cut(s) 29
BtgI CCRYGG 1 cut(s) 39
BtsCI GGATG 1 cut(s) 112
BtsIMutI CAGTG 1 cut(s) 147
Cac8I GCNNGC 1 cut(s) 95
CfoI GCGC 2 cut(s) 17, 22
Cfr42I CCGCGG 1 cut(s) 42
CseI GACGC 1 cut(s) 251
Csp6I GTAC 1 cut(s) 153
CviJI RGCY 5 cut(s) 7, 54, 67, 97, 171
CviKI_1 RGCY 5 cut(s) 7, 54, 67, 97, 171
CviQI GTAC 1 cut(s) 153
Eam1104I CTCTTC 2 cut(s) 106, 185
EarI CTCTTC 2 cut(s) 106, 185
EciI GGCGGA 1 cut(s) 59
Ecl136II GAGCTC 2 cut(s) 67, 97
Eco24I GRGCYC 3 cut(s) 9, 69, 99
Eco53kI GAGCTC 2 cut(s) 67, 97
EcoICRI GAGCTC 2 cut(s) 67, 97
EcoT38I GRGCYC 3 cut(s) 9, 69, 99
Fnu4HI GCNGC 2 cut(s) 18, 42
FokI GGATG 1 cut(s) 119
FriOI GRGCYC 3 cut(s) 9, 69, 99
Fsp4HI GCNGC 2 cut(s) 18, 42
GlaI GCGC 2 cut(s) 16, 21
GluI GCNGC 2 cut(s) 18, 42
HaeII RGCGCY 1 cut(s) 23
HgaI GACGC 1 cut(s) 251
HhaI GCGC 2 cut(s) 17, 22
Hin1I GRCGYC 1 cut(s) 243
Hin6I GCGC 2 cut(s) 15, 20
HinP1I GCGC 2 cut(s) 15, 20
HinfI GANTC 1 cut(s) 35
HphI GGTGA 1 cut(s) 196
Hpy166II GTNNAC 1 cut(s) 241
Hpy188I TCNGA 2 cut(s) 64, 106
Hpy188III TCNNGA 1 cut(s) 81
Hpy8I GTNNAC 1 cut(s) 241
HpyAV CCTTC 3 cut(s) 83, 205, 212
HpyCH4III ACNGT 1 cut(s) 238
HpyCH4IV ACGT 1 cut(s) 142
HpyCH4V TGCA 2 cut(s) 28, 140
HpySE526I ACGT 1 cut(s) 142
Hsp92I GRCGYC 1 cut(s) 243
HspAI GCGC 2 cut(s) 15, 20
KspI CCGCGG 1 cut(s) 42
LmnI GCTCC 3 cut(s) 4, 64, 72
LpnPI CCDG 3 cut(s) 94, 135, 138
Lsp1109I GCAGC 1 cut(s) 29
LweI GCATC 1 cut(s) 15
MaeII ACGT 1 cut(s) 142
MboII GAAGA 4 cut(s) 93, 98, 172, 175
MhlI GDGCHC 3 cut(s) 9, 69, 99
MluCI AATT 1 cut(s) 200
MlyI GAGTC 1 cut(s) 44
MnlI CCTC 2 cut(s) 81, 197
MroXI GAANNNNTTC 1 cut(s) 226
MseI TTAA 1 cut(s) 174
MspA1I CMGCKG 1 cut(s) 41
MteI GCGCNGCGC 1 cut(s) 18
MvnI CGCG 1 cut(s) 41
NlaIV GGNNCC 1 cut(s) 6
PdmI GAANNNNTTC 1 cut(s) 226
PflFI GACNNNGTC 1 cut(s) 245
PkrI GCNGC 2 cut(s) 19, 43
PleI GAGTC 1 cut(s) 43
PpsI GAGTC 1 cut(s) 43
Psp124BI GAGCTC 2 cut(s) 69, 99
PspN4I GGNNCC 1 cut(s) 6
PsyI GACNNNGTC 1 cut(s) 245
RsaI GTAC 1 cut(s) 154
RsaNI GTAC 1 cut(s) 153
SacI GAGCTC 2 cut(s) 69, 99
SacII CCGCGG 1 cut(s) 42
SaqAI TTAA 1 cut(s) 174
SatI GCNGC 2 cut(s) 18, 42
SchI GAGTC 1 cut(s) 44
SduI GDGCHC 3 cut(s) 9, 69, 99
SetI ASST 3 cut(s) 69, 99, 145
SfaNI GCATC 1 cut(s) 15
Sfr303I CCGCGG 1 cut(s) 42
SgrBI CCGCGG 1 cut(s) 42
Sse9I AATT 1 cut(s) 200
SsiI CCGC 3 cut(s) 39, 41, 44
SstI GAGCTC 2 cut(s) 69, 99
TaaI ACNGT 1 cut(s) 238
TaiI ACGT 1 cut(s) 145
TaqI TCGA 1 cut(s) 33
TasI AATT 1 cut(s) 200
TauI GCSGC 1 cut(s) 44
Tru1I TTAA 1 cut(s) 174
Tru9I TTAA 1 cut(s) 174
TscAI CASTG 1 cut(s) 154
TseI GCWGC 1 cut(s) 17
TspDTI ATGAA 1 cut(s) 231
TspRI CASTG 1 cut(s) 154
Tth111I GACNNNGTC 1 cut(s) 245
XapI RAATTY 1 cut(s) 200
XmnI GAANNNNTTC 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.