Rorug02G0268100

RNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0015743
Physical Location & Seq
Reverse (-)
28305103 .. 28305483
381 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0268100.1

Sequence Viewer

Length: 381 bp
ATGCTTGACTCGGGTAACTTTGTACTATACAACTCCGATCGGAAAATAGTATGGCAAAGTTTTGACTCTCCAACTGATACCCTTTTGCCAAAACAACGTTTGAGAGCAGGCTCACATCTTTACTCTGCTAAATCCAAAACTAATAGCTCAACTGGCATTTTCCGTCTCAGTATGCAAACTGATGGAAACCTTGTTCAGTATCCAGCATCTGCCCCAGCAACTGCTCCGTATGCTTACTATGCATCTCAAACAGACGGAAGTGGAGACAACGTGACACTGAACTTGGATGCTGATGGCCATCTCTACTTACTCAACAACACTCGTTTCAATATACACAATATTACGAATGGAGGTATTCCTGTTGATCAAGGCAAATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3H1

Protein Analysis

126

Amino Acids

13.76

Weight (kDa)

6.81

Isoelectric Point (pI)

36.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 1 - 36 8.1e-10 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 97
AcoI YGGCCR 1 cut(s) 295
AfaI GTAC 1 cut(s) 24
AgsI TTSAA 1 cut(s) 328
AloI GAACNNNNNNTCC 2 cut(s) 177, 209
AluBI AGCT 1 cut(s) 147
AluI AGCT 1 cut(s) 147
Alw26I GTCTC 2 cut(s) 170, 258
AlwNI CAGNNNCTG 2 cut(s) 209, 221
Ama87I CYCGRG 1 cut(s) 10
AoxI GGCC 1 cut(s) 295
AvaI CYCGRG 1 cut(s) 10
BalI TGGCCA 1 cut(s) 297
BccI CCATC 3 cut(s) 176, 287, 306
BciVI GTATCC 1 cut(s) 210
BclI TGATCA 1 cut(s) 364
BcoDI GTCTC 2 cut(s) 170, 258
BfuI GTATCC 1 cut(s) 210
BmeT110I CYCGRG 1 cut(s) 10
BmsI GCATC 3 cut(s) 215, 251, 277
BsaBI GATNNNNATC 1 cut(s) 297
BsaXI ACNNNNNCTCC 2 cut(s) 255, 285
Bse1I ACTGG 1 cut(s) 157
Bse8I GATNNNNATC 1 cut(s) 297
BseGI GGATG 1 cut(s) 292
BseJI GATNNNNATC 1 cut(s) 297
BseMII CTCAG 1 cut(s) 181
BseNI ACTGG 1 cut(s) 157
BseYI CCCAGC 1 cut(s) 214
Bsh1285I CGRYCG 1 cut(s) 40
BshFI GGCC 1 cut(s) 297
BsiEI CGRYCG 1 cut(s) 40
BsiHKCI CYCGRG 1 cut(s) 10
BsmAI GTCTC 2 cut(s) 170, 258
BsmBI CGTCTC 1 cut(s) 170
BsnI GGCC 1 cut(s) 297
BsoBI CYCGRG 1 cut(s) 10
Bsp143I GATC 2 cut(s) 37, 364
BspANI GGCC 1 cut(s) 297
BspCNI CTCAG 1 cut(s) 180
BsrI ACTGG 1 cut(s) 157
BssMI GATC 2 cut(s) 37, 364
BstC8I GCNNGC 1 cut(s) 109
BstDEI CTNAG 1 cut(s) 167
BstF5I GGATG 1 cut(s) 292
BstKTI GATC 2 cut(s) 40, 367
BstMAI GTCTC 2 cut(s) 170, 258
BstMBI GATC 2 cut(s) 37, 364
BstMCI CGRYCG 1 cut(s) 40
BstMWI GCNNNNNNNGC 3 cut(s) 153, 230, 239
BsuI GTATCC 1 cut(s) 210
BsuRI GGCC 1 cut(s) 297
BtsCI GGATG 1 cut(s) 292
BtsIMutI CAGTG 1 cut(s) 275
Cac8I GCNNGC 1 cut(s) 109
CaiI CAGNNNCTG 2 cut(s) 209, 221
Csp6I GTAC 1 cut(s) 23
CviJI RGCY 3 cut(s) 111, 147, 297
CviKI_1 RGCY 3 cut(s) 111, 147, 297
CviQI GTAC 1 cut(s) 23
DdeI CTNAG 1 cut(s) 167
DpnI GATC 2 cut(s) 39, 366
DpnII GATC 2 cut(s) 37, 364
EaeI YGGCCR 1 cut(s) 295
Eco88I CYCGRG 1 cut(s) 10
EcoT22I ATGCAT 1 cut(s) 244
Esp3I CGTCTC 1 cut(s) 170
FaiI YATR 6 cut(s) 28, 52, 173, 231, 240, 332
FbaI TGATCA 1 cut(s) 364
FokI GGATG 1 cut(s) 299
GsaI CCCAGC 1 cut(s) 218
HaeIII GGCC 1 cut(s) 297
HinfI GANTC 2 cut(s) 8, 65
Hpy188I TCNGA 2 cut(s) 37, 42
HpyCH4IV ACGT 2 cut(s) 97, 270
HpyCH4V TGCA 2 cut(s) 175, 242
HpyF10VI GCNNNNNNNGC 3 cut(s) 153, 230, 239
HpyF3I CTNAG 1 cut(s) 167
HpySE526I ACGT 2 cut(s) 97, 270
Ksp22I TGATCA 1 cut(s) 364
Kzo9I GATC 2 cut(s) 37, 364
LmnI GCTCC 1 cut(s) 229
LpnPI CCDG 5 cut(s) 93, 138, 216, 228, 372
LweI GCATC 3 cut(s) 215, 251, 277
MaeII ACGT 2 cut(s) 97, 270
MaeIII GTNAC 2 cut(s) 14, 271
MalI GATC 2 cut(s) 39, 366
MboI GATC 2 cut(s) 37, 364
MlsI TGGCCA 1 cut(s) 297
MluNI TGGCCA 1 cut(s) 297
MlyI GAGTC 2 cut(s) 2, 59
MmeI TCCRAC 1 cut(s) 95
MnlI CCTC 1 cut(s) 344
Mox20I TGGCCA 1 cut(s) 297
Mph1103I ATGCAT 1 cut(s) 244
MscI TGGCCA 1 cut(s) 297
MseI TTAA 1 cut(s) 379
Msp20I TGGCCA 1 cut(s) 297
MwoI GCNNNNNNNGC 3 cut(s) 153, 230, 239
NdeII GATC 2 cut(s) 37, 364
NmuCI GTSAC 1 cut(s) 271
NsiI ATGCAT 1 cut(s) 244
Ple19I CGATCG 1 cut(s) 40
PleI GAGTC 2 cut(s) 2, 59
PpsI GAGTC 2 cut(s) 2, 59
Psp1406I AACGTT 1 cut(s) 97
PspFI CCCAGC 1 cut(s) 214
PstNI CAGNNNCTG 2 cut(s) 209, 221
PvuI CGATCG 1 cut(s) 40
RsaI GTAC 1 cut(s) 24
RsaNI GTAC 1 cut(s) 23
SaqAI TTAA 1 cut(s) 379
Sau3AI GATC 2 cut(s) 37, 364
SchI GAGTC 2 cut(s) 2, 59
SetI ASST 5 cut(s) 100, 149, 192, 273, 355
SfaNI GCATC 3 cut(s) 215, 251, 277
SspI AATATT 1 cut(s) 340
TaiI ACGT 2 cut(s) 100, 273
TatI WGTACW 1 cut(s) 22
Tru1I TTAA 1 cut(s) 379
Tru9I TTAA 1 cut(s) 379
TscAI CASTG 1 cut(s) 282
TseFI GTSAC 1 cut(s) 271
Tsp45I GTSAC 1 cut(s) 271
TspGWI ACGGA 3 cut(s) 152, 216, 270
TspRI CASTG 1 cut(s) 282
Zsp2I ATGCAT 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.