Rmu_sc0020121.1_g000002

RNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0020121.1
OG0015743
Physical Location & Seq
Forward (+)
3061 .. 5137
2077 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0020121.1_g000002.1.cds

Sequence Viewer

Length: 525 bp
atggcatgtgagacgatcatagtgatgatctttggtgatttcaaaggctgcgatcatagtgatgatcattttggttctcctagaggcgatagggcaaggctcactgagcctgtgagtccaacggcgcagcgcttggagtctgcggcggacaaaagccctaactcggagctccaaggctcgaaactgagccttttacttgctccagggcccatgctggttccaccagtgaacaaattcacccaagggaatcaagcggggaaggctgtatctcccgcaagctctgctggtattcagtgccaaatctccaagcaacctacttcccagaagaacaatgatgcgaacagagtaccattaaaacatgctacacctggatggcgtcccccatctgcccacttggggcccaacaataatcttgtgataagcttctcaaatgatgacagtttcagggaaggccgtatctcccgcaagctctgctggtattcagtgccaaatctccaagcaacctacttcccagaagaacaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3H1

Protein Analysis

174

Amino Acids

18.89

Weight (kDa)

8.39

Isoelectric Point (pI)

49.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 143, 146, 254, 273, 463
AcsI RAATTY 1 cut(s) 233
AcyI GRCGYC 1 cut(s) 376
AfaI GTAC 1 cut(s) 348
AfeI AGCGCT 1 cut(s) 131
AfiI CCNNNNNNNGG 2 cut(s) 163, 396
AgsI TTSAA 1 cut(s) 43
AjnI CCWGG 2 cut(s) 202, 367
AluBI AGCT 4 cut(s) 169, 279, 423, 469
AluI AGCT 4 cut(s) 169, 279, 423, 469
Alw21I GWGCWC 1 cut(s) 171
Alw26I GTCTC 1 cut(s) 5
Aor51HI AGCGCT 1 cut(s) 131
AoxI GGCC 3 cut(s) 206, 398, 451
ApaI GGGCCC 2 cut(s) 210, 402
ApeKI GCWGC 2 cut(s) 48, 127
ApoI RAATTY 1 cut(s) 233
Asp700I GAANNNNTTC 1 cut(s) 233
AspLEI GCGC 2 cut(s) 127, 132
AspS9I GGNCC 4 cut(s) 206, 207, 398, 399
AsuHPI GGTGA 2 cut(s) 47, 229
BaeGI GKGCMC 2 cut(s) 210, 402
BanII GRGCYC 3 cut(s) 171, 210, 402
Bbv12I GWGCWC 1 cut(s) 171
BbvI GCAGC 2 cut(s) 35, 139
BccI CCATC 2 cut(s) 366, 391
BceAI ACGGC 2 cut(s) 138, 438
BciT130I CCWGG 2 cut(s) 204, 369
BclI TGATCA 1 cut(s) 64
BcoDI GTCTC 1 cut(s) 5
BfaI CTAG 1 cut(s) 81
BfoI RGCGCY 1 cut(s) 133
BisI GCNGC 3 cut(s) 49, 128, 144
BlsI GCNGC 3 cut(s) 50, 129, 145
Bme1390I CCNGG 2 cut(s) 204, 369
BmgT120I GGNCC 4 cut(s) 206, 207, 398, 399
BmiI GGNNCC 4 cut(s) 208, 219, 399, 400
BmrFI CCNGG 2 cut(s) 204, 369
BmsI GCATC 1 cut(s) 325
BpmI CTGGAG 1 cut(s) 186
BsaHI GRCGYC 1 cut(s) 376
BsaJI CCNNGG 3 cut(s) 172, 203, 241
Bsc4I CCNNNNNNNGG 2 cut(s) 163, 396
Bse1I ACTGG 1 cut(s) 224
BseBI CCWGG 2 cut(s) 204, 369
BseDI CCNNGG 3 cut(s) 172, 203, 241
BseGI GGATG 1 cut(s) 377
BseLI CCNNNNNNNGG 2 cut(s) 163, 396
BseMII CTCAG 2 cut(s) 96, 176
BseNI ACTGG 1 cut(s) 224
BseSI GKGCMC 2 cut(s) 210, 402
BseXI GCAGC 2 cut(s) 35, 139
BshFI GGCC 3 cut(s) 208, 400, 453
BsiHKAI GWGCWC 1 cut(s) 171
BslFI GGGAC 1 cut(s) 363
BslI CCNNNNNNNGG 2 cut(s) 163, 396
BsmAI GTCTC 1 cut(s) 5
BsmBI CGTCTC 1 cut(s) 5
BsmFI GGGAC 1 cut(s) 363
BsnI GGCC 3 cut(s) 208, 400, 453
Bsp120I GGGCCC 2 cut(s) 206, 398
Bsp1286I GDGCHC 3 cut(s) 171, 210, 402
Bsp143I GATC 4 cut(s) 15, 27, 52, 64
BspACI CCGC 5 cut(s) 143, 146, 254, 273, 463
BspANI GGCC 3 cut(s) 208, 400, 453
BspCNI CTCAG 2 cut(s) 97, 177
BspLI GGNNCC 4 cut(s) 208, 219, 399, 400
BsrI ACTGG 1 cut(s) 224
BssECI CCNNGG 3 cut(s) 172, 203, 241
BssMI GATC 4 cut(s) 15, 27, 52, 64
BssNI GRCGYC 1 cut(s) 376
BssT1I CCWWGG 2 cut(s) 172, 241
Bst2UI CCWGG 2 cut(s) 204, 369
Bst4CI ACNGT 1 cut(s) 440
BstACI GRCGYC 1 cut(s) 376
BstAPI GCANNNNNTGC 2 cut(s) 281, 471
BstC8I GCNNGC 2 cut(s) 277, 467
BstDEI CTNAG 2 cut(s) 105, 185
BstF5I GGATG 1 cut(s) 377
BstH2I RGCGCY 1 cut(s) 133
BstHHI GCGC 2 cut(s) 127, 132
BstKTI GATC 4 cut(s) 18, 30, 55, 67
BstMAI GTCTC 1 cut(s) 5
BstMBI GATC 4 cut(s) 15, 27, 52, 64
BstMWI GCNNNNNNNGC 4 cut(s) 106, 260, 281, 471
BstNI CCWGG 2 cut(s) 204, 369
BstNSI RCATGY 2 cut(s) 9, 362
BstSCI CCNGG 2 cut(s) 202, 367
BstSLI GKGCMC 2 cut(s) 210, 402
BstV1I GCAGC 2 cut(s) 35, 139
BsuRI GGCC 3 cut(s) 208, 400, 453
BtsCI GGATG 1 cut(s) 377
BtsIMutI CAGTG 4 cut(s) 102, 231, 299, 489
Cac8I GCNNGC 2 cut(s) 277, 467
CfoI GCGC 2 cut(s) 127, 132
Cfr13I GGNCC 4 cut(s) 206, 207, 398, 399
CseI GACGC 1 cut(s) 365
Csp6I GTAC 1 cut(s) 347
CviAII CATG 3 cut(s) 6, 211, 359
CviQI GTAC 1 cut(s) 347
DdeI CTNAG 2 cut(s) 105, 185
DpnI GATC 4 cut(s) 17, 29, 54, 66
DpnII GATC 4 cut(s) 15, 27, 52, 64
EciI GGCGGA 1 cut(s) 161
Ecl136II GAGCTC 1 cut(s) 169
Eco130I CCWWGG 2 cut(s) 172, 241
Eco24I GRGCYC 3 cut(s) 171, 210, 402
Eco47III AGCGCT 1 cut(s) 131
Eco53kI GAGCTC 1 cut(s) 169
EcoICRI GAGCTC 1 cut(s) 169
EcoO109I RGGNCCY 2 cut(s) 206, 398
EcoRII CCWGG 2 cut(s) 202, 367
EcoT14I CCWWGG 2 cut(s) 172, 241
EcoT38I GRGCYC 3 cut(s) 171, 210, 402
ErhI CCWWGG 2 cut(s) 172, 241
Esp3I CGTCTC 1 cut(s) 5
FaeI CATG 3 cut(s) 9, 214, 362
FaiI YATR 5 cut(s) 7, 20, 57, 212, 360
FaqI GGGAC 1 cut(s) 363
FatI CATG 3 cut(s) 5, 210, 358
FauI CCCGC 3 cut(s) 247, 280, 470
FbaI TGATCA 1 cut(s) 64
Fnu4HI GCNGC 3 cut(s) 49, 128, 144
FokI GGATG 1 cut(s) 384
FriOI GRGCYC 3 cut(s) 171, 210, 402
Fsp4HI GCNGC 3 cut(s) 49, 128, 144
FspBI CTAG 1 cut(s) 81
GlaI GCGC 2 cut(s) 126, 131
GluI GCNGC 3 cut(s) 49, 128, 144
GsuI CTGGAG 1 cut(s) 186
HaeII RGCGCY 1 cut(s) 133
HaeIII GGCC 3 cut(s) 208, 400, 453
HgaI GACGC 1 cut(s) 365
HhaI GCGC 2 cut(s) 127, 132
Hin1I GRCGYC 1 cut(s) 376
Hin1II CATG 3 cut(s) 9, 214, 362
Hin6I GCGC 2 cut(s) 125, 130
HinP1I GCGC 2 cut(s) 125, 130
HindIII AAGCTT 1 cut(s) 421
HinfI GANTC 3 cut(s) 115, 137, 247
HphI GGTGA 2 cut(s) 47, 229
Hpy166II GTNNAC 1 cut(s) 229
Hpy188I TCNGA 1 cut(s) 166
Hpy8I GTNNAC 1 cut(s) 229
HpyAV CCTTC 2 cut(s) 253, 443
HpyCH4III ACNGT 1 cut(s) 440
HpyF10VI GCNNNNNNNGC 4 cut(s) 106, 260, 281, 471
HpyF3I CTNAG 2 cut(s) 105, 185
Hsp92I GRCGYC 1 cut(s) 376
Hsp92II CATG 3 cut(s) 9, 214, 362
HspAI GCGC 2 cut(s) 125, 130
Ksp22I TGATCA 1 cut(s) 64
Kzo9I GATC 4 cut(s) 15, 27, 52, 64
LmnI GCTCC 3 cut(s) 166, 174, 205
Lsp1109I GCAGC 2 cut(s) 35, 139
LweI GCATC 1 cut(s) 325
MaeI CTAG 1 cut(s) 81
MalI GATC 4 cut(s) 17, 29, 54, 66
MboI GATC 4 cut(s) 15, 27, 52, 64
MboII GAAGA 1 cut(s) 337
MhlI GDGCHC 3 cut(s) 171, 210, 402
MluCI AATT 1 cut(s) 233
MlyI GAGTC 2 cut(s) 124, 146
MmeI TCCRAC 1 cut(s) 143
MnlI CCTC 1 cut(s) 77
MroXI GAANNNNTTC 1 cut(s) 233
MseI TTAA 1 cut(s) 353
MslI CAYNNNNRTG 3 cut(s) 23, 60, 370
MspR9I CCNGG 2 cut(s) 204, 369
MteI GCGCNGCGC 1 cut(s) 128
MvaI CCWGG 2 cut(s) 204, 369
MwoI GCNNNNNNNGC 4 cut(s) 106, 260, 281, 471
NdeII GATC 4 cut(s) 15, 27, 52, 64
NlaIII CATG 3 cut(s) 9, 214, 362
NlaIV GGNNCC 4 cut(s) 208, 219, 399, 400
NspI RCATGY 2 cut(s) 9, 362
PdmI GAANNNNTTC 1 cut(s) 233
PfeI GAWTC 1 cut(s) 247
PkrI GCNGC 3 cut(s) 50, 129, 145
PleI GAGTC 2 cut(s) 123, 145
PpsI GAGTC 2 cut(s) 123, 145
Psp124BI GAGCTC 1 cut(s) 171
Psp6I CCWGG 2 cut(s) 202, 367
PspGI CCWGG 2 cut(s) 202, 367
PspN4I GGNNCC 4 cut(s) 208, 219, 399, 400
PspOMI GGGCCC 2 cut(s) 206, 398
PspPI GGNCC 4 cut(s) 206, 207, 398, 399
RsaI GTAC 1 cut(s) 348
RsaNI GTAC 1 cut(s) 347
RseI CAYNNNNRTG 3 cut(s) 23, 60, 370
SacI GAGCTC 1 cut(s) 171
SaqAI TTAA 1 cut(s) 353
SatI GCNGC 3 cut(s) 49, 128, 144
Sau3AI GATC 4 cut(s) 15, 27, 52, 64
Sau96I GGNCC 4 cut(s) 206, 207, 398, 399
SchI GAGTC 2 cut(s) 124, 146
ScrFI CCNGG 2 cut(s) 204, 369
SduI GDGCHC 3 cut(s) 171, 210, 402
SetI ASST 7 cut(s) 171, 281, 316, 370, 425, 471, 506
SfaNI GCATC 1 cut(s) 325
SmiMI CAYNNNNRTG 3 cut(s) 23, 60, 370
Sse9I AATT 1 cut(s) 233
SsiI CCGC 5 cut(s) 143, 146, 254, 273, 463
SspMI CTAG 1 cut(s) 81
SstI GAGCTC 1 cut(s) 171
StyD4I CCNGG 2 cut(s) 202, 367
StyI CCWWGG 2 cut(s) 172, 241
TaaI ACNGT 1 cut(s) 440
TaqI TCGA 1 cut(s) 179
TasI AATT 1 cut(s) 233
TauI GCSGC 1 cut(s) 146
TfiI GAWTC 1 cut(s) 247
Tru1I TTAA 1 cut(s) 353
Tru9I TTAA 1 cut(s) 353
TscAI CASTG 4 cut(s) 109, 231, 299, 489
TseI GCWGC 2 cut(s) 48, 127
TspRI CASTG 4 cut(s) 109, 231, 299, 489
XapI RAATTY 1 cut(s) 233
XceI RCATGY 2 cut(s) 9, 362
XmnI GAANNNNTTC 1 cut(s) 233
XspI CTAG 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.