Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0015743

Physical Location & Seq

Genomic Coordinates Forward (+)

37074167 .. 37075007

Gene Structure 841 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG332900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGGGAAGGCTGTATCTCCTGCAAGCTCTGCTGATATTCAGTGCCAAACCTCCAAGCGATCTACTTCCCAGAAGAGCAATGATGCGAACAGAGTACCGTTAAAACTTGCTACACCTGGATGGCGTCCTCCACGTGCCCACTCGGGGCCCAACAATAATCTTGTGATAAGCTTCTCAGATGATGACAGTCAGAGTGATTCTGAAGAAACAGACCGTGGGAAACTAAAAGCTTTACAAACTAAAAGTAATATGGCTCGAGGGAATGCTAATGGAAAACCACCCATTTCTTCACTTGCAAAACCAAACAAGTTGGGACAGCCTGCCAGAAATGTGAATAAAGTAATGCCCAAAAAGTTGTCTATGAATCGCACATTTATGACATCAATGGCGAATATCCGTGGAGTTAATTCTAGAGATTCTGTGCCTTCATCAGTTGAGCAAGGATCTCGAGCTGGAAATTTCAATTCCAGCAACAAAAATATAGTGAACAGAGAGCGATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3H1

Protein Analysis

167

Amino Acids

18.02

Weight (kDa)

10.83

Isoelectric Point (pI)

51.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015743)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0492191
rosa_laevigata	RLG00000022821 RLG00000022828
rosa_multiflora	Rmu_sc0009049.1_g000012 Rmu_sc0009109.1_g000004 Rmu_sc0014853.1_g000001 Rmu_sc0020121.1_g000002 Rmu_sc0023760.1_g000002
rosa_roxburghii	Rroxscaffold_6G00388500
rosa_rugosa	Rorug02G0268100
rosa_samantha	Rh3AG295300 Rh3AG302400 Rh3CG332800 Rh3CG332900 Rh3DG334800 Rh6AG108000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	502
AclWI	GGATC	1 cut(s)	451
AcsI	RAATTY	1 cut(s)	457
AcuI	CTGAAG	1 cut(s)	222
AcvI	CACGTG	1 cut(s)	134
AcyI	GRCGYC	1 cut(s)	124
AfaI	GTAC	1 cut(s)	96
AfiI	CCNNNNNNNGG	1 cut(s)	144
AgsI	TTSAA	1 cut(s)	463
AjnI	CCWGG	1 cut(s)	115
AluBI	AGCT	4 cut(s)	27, 171, 230, 452
AluI	AGCT	4 cut(s)	27, 171, 230, 452
AlwI	GGATC	1 cut(s)	451
Ama87I	CYCGRG	3 cut(s)	142, 255, 447
AoxI	GGCC	1 cut(s)	146
ApaI	GGGCCC	1 cut(s)	150
ApoI	RAATTY	1 cut(s)	457
AspS9I	GGNCC	2 cut(s)	146, 147
AvaI	CYCGRG	3 cut(s)	142, 255, 447
BaeGI	GKGCMC	2 cut(s)	139, 150
BanII	GRGCYC	1 cut(s)	150
BbrPI	CACGTG	1 cut(s)	134
BccI	CCATC	1 cut(s)	114
BcgI	CGANNNNNNTGC	2 cut(s)	428, 462
BciT130I	CCWGG	1 cut(s)	117
BfaI	CTAG	1 cut(s)	411
Bme1390I	CCNGG	1 cut(s)	117
BmeT110I	CYCGRG	3 cut(s)	142, 255, 447
BmgT120I	GGNCC	2 cut(s)	146, 147
BmiI	GGNNCC	2 cut(s)	147, 148
BmrFI	CCNGG	1 cut(s)	117
BmsI	GCATC	1 cut(s)	73
BsaAI	YACGTR	1 cut(s)	134
BsaHI	GRCGYC	1 cut(s)	124
BsaJI	CCNNGG	2 cut(s)	214, 397
Bsc4I	CCNNNNNNNGG	1 cut(s)	144
Bse3DI	GCAATG	1 cut(s)	85
BseBI	CCWGG	1 cut(s)	117
BseDI	CCNNGG	2 cut(s)	214, 397
BseGI	GGATG	1 cut(s)	125
BseLI	CCNNNNNNNGG	1 cut(s)	144
BseMI	GCAATG	1 cut(s)	85
BseMII	CTCAG	1 cut(s)	189
BseSI	GKGCMC	2 cut(s)	139, 150
BshFI	GGCC	1 cut(s)	148
BsiHKCI	CYCGRG	3 cut(s)	142, 255, 447
BslFI	GGGAC	1 cut(s)	327
BslI	CCNNNNNNNGG	1 cut(s)	144
BsmFI	GGGAC	1 cut(s)	327
BsmI	GAATGC	1 cut(s)	268
BsnI	GGCC	1 cut(s)	148
BsoBI	CYCGRG	3 cut(s)	142, 255, 447
Bsp120I	GGGCCC	1 cut(s)	146
Bsp1286I	GDGCHC	2 cut(s)	139, 150
Bsp143I	GATC	2 cut(s)	59, 443
BspANI	GGCC	1 cut(s)	148
BspCNI	CTCAG	1 cut(s)	188
BspLI	GGNNCC	2 cut(s)	147, 148
BspPI	GGATC	1 cut(s)	451
BspQI	GCTCTTC	1 cut(s)	68
BsrDI	GCAATG	1 cut(s)	85
BssECI	CCNNGG	2 cut(s)	214, 397
BssMI	GATC	2 cut(s)	59, 443
BssNI	GRCGYC	1 cut(s)	124
Bst2UI	CCWGG	1 cut(s)	117
Bst4CI	ACNGT	3 cut(s)	99, 188, 215
Bst6I	CTCTTC	1 cut(s)	68
BstACI	GRCGYC	1 cut(s)	124
BstAPI	GCANNNNNTGC	1 cut(s)	29
BstBAI	YACGTR	1 cut(s)	134
BstC8I	GCNNGC	2 cut(s)	25, 321
BstDEI	CTNAG	1 cut(s)	175
BstDSI	CCRYGG	2 cut(s)	214, 397
BstF5I	GGATG	1 cut(s)	125
BstKTI	GATC	2 cut(s)	62, 446
BstMBI	GATC	2 cut(s)	59, 443
BstMWI	GCNNNNNNNGC	1 cut(s)	29
BstNI	CCWGG	1 cut(s)	117
BstSCI	CCNGG	1 cut(s)	115
BstSLI	GKGCMC	2 cut(s)	139, 150
BstX2I	RGATCY	1 cut(s)	443
BstYI	RGATCY	1 cut(s)	443
BsuRI	GGCC	1 cut(s)	148
BtgI	CCRYGG	2 cut(s)	214, 397
BtsCI	GGATG	1 cut(s)	125
BtsIMutI	CAGTG	1 cut(s)	47
Cac8I	GCNNGC	2 cut(s)	25, 321
Cfr13I	GGNCC	2 cut(s)	146, 147
CseI	GACGC	1 cut(s)	113
Csp6I	GTAC	1 cut(s)	95
CviJI	RGCY	8 cut(s)	11, 27, 148, 171, 230, 254, 319, 452
CviKI_1	RGCY	8 cut(s)	11, 27, 148, 171, 230, 254, 319, 452
CviQI	GTAC	1 cut(s)	95
DdeI	CTNAG	1 cut(s)	175
DpnI	GATC	2 cut(s)	61, 445
DpnII	GATC	2 cut(s)	59, 443
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
Eco24I	GRGCYC	1 cut(s)	150
Eco57I	CTGAAG	1 cut(s)	222
Eco72I	CACGTG	1 cut(s)	134
Eco88I	CYCGRG	3 cut(s)	142, 255, 447
EcoO109I	RGGNCCY	1 cut(s)	146
EcoRII	CCWGG	1 cut(s)	115
EcoT38I	GRGCYC	1 cut(s)	150
FaiI	YATR	5 cut(s)	251, 362, 377, 482, 502
FaqI	GGGAC	1 cut(s)	327
FokI	GGATG	1 cut(s)	132
FriOI	GRGCYC	1 cut(s)	150
FspBI	CTAG	1 cut(s)	411
HaeIII	GGCC	1 cut(s)	148
HgaI	GACGC	1 cut(s)	113
Hin1I	GRCGYC	1 cut(s)	124
HindIII	AAGCTT	2 cut(s)	169, 228
HinfI	GANTC	3 cut(s)	197, 364, 416
Hpy166II	GTNNAC	1 cut(s)	487
Hpy188I	TCNGA	3 cut(s)	178, 192, 202
Hpy188III	TCNNGA	2 cut(s)	411, 447
Hpy8I	GTNNAC	1 cut(s)	487
HpyAV	CCTTC	1 cut(s)	435
HpyCH4III	ACNGT	3 cut(s)	99, 188, 215
HpyCH4IV	ACGT	1 cut(s)	133
HpyCH4V	TGCA	2 cut(s)	23, 296
HpyF10VI	GCNNNNNNNGC	1 cut(s)	29
HpyF3I	CTNAG	1 cut(s)	175
HpySE526I	ACGT	1 cut(s)	133
Hsp92I	GRCGYC	1 cut(s)	124
Kzo9I	GATC	2 cut(s)	59, 443
LguI	GCTCTTC	1 cut(s)	68
LpnPI	CCDG	8 cut(s)	33, 83, 102, 129, 333, 337, 438, 481
LweI	GCATC	1 cut(s)	73
MaeI	CTAG	1 cut(s)	411
MaeII	ACGT	1 cut(s)	133
MalI	GATC	2 cut(s)	61, 445
MboI	GATC	2 cut(s)	59, 443
MboII	GAAGA	3 cut(s)	85, 215, 279
MflI	RGATCY	1 cut(s)	443
MhlI	GDGCHC	2 cut(s)	139, 150
MluCI	AATT	3 cut(s)	406, 457, 463
MnlI	CCTC	3 cut(s)	61, 138, 251
MseI	TTAA	2 cut(s)	101, 405
MslI	CAYNNNNRTG	2 cut(s)	118, 374
MspR9I	CCNGG	1 cut(s)	117
Mva1269I	GAATGC	1 cut(s)	268
MvaI	CCWGG	1 cut(s)	117
MwoI	GCNNNNNNNGC	1 cut(s)	29
NdeII	GATC	2 cut(s)	59, 443
NlaIV	GGNNCC	2 cut(s)	147, 148
PaeR7I	CTCGAG	2 cut(s)	255, 447
PciSI	GCTCTTC	1 cut(s)	68
PctI	GAATGC	1 cut(s)	268
PfeI	GAWTC	3 cut(s)	197, 364, 416
PmaCI	CACGTG	1 cut(s)	134
PmlI	CACGTG	1 cut(s)	134
Ppu21I	YACGTR	1 cut(s)	134
PsiI	TTATAA	1 cut(s)	502
Psp6I	CCWGG	1 cut(s)	115
PspCI	CACGTG	1 cut(s)	134
PspGI	CCWGG	1 cut(s)	115
PspN4I	GGNNCC	2 cut(s)	147, 148
PspOMI	GGGCCC	1 cut(s)	146
PspPI	GGNCC	2 cut(s)	146, 147
PspXI	VCTCGAGB	1 cut(s)	255
PsuI	RGATCY	1 cut(s)	443
RsaI	GTAC	1 cut(s)	96
RsaNI	GTAC	1 cut(s)	95
RseI	CAYNNNNRTG	2 cut(s)	118, 374
SapI	GCTCTTC	1 cut(s)	68
SaqAI	TTAA	2 cut(s)	101, 405
Sau3AI	GATC	2 cut(s)	59, 443
Sau96I	GGNCC	2 cut(s)	146, 147
ScrFI	CCNGG	1 cut(s)	117
SduI	GDGCHC	2 cut(s)	139, 150
SetI	ASST	7 cut(s)	29, 53, 118, 136, 173, 232, 454
SfaNI	GCATC	1 cut(s)	73
Sfr274I	CTCGAG	2 cut(s)	255, 447
SlaI	CTCGAG	2 cut(s)	255, 447
SmiMI	CAYNNNNRTG	2 cut(s)	118, 374
SmlI	CTYRAG	2 cut(s)	255, 447
SmoI	CTYRAG	2 cut(s)	255, 447
Sse9I	AATT	3 cut(s)	406, 457, 463
SspMI	CTAG	1 cut(s)	411
StyD4I	CCNGG	1 cut(s)	115
TaaI	ACNGT	3 cut(s)	99, 188, 215
TaiI	ACGT	1 cut(s)	136
TaqI	TCGA	2 cut(s)	256, 448
TasI	AATT	3 cut(s)	406, 457, 463
TfiI	GAWTC	3 cut(s)	197, 364, 416
Tru1I	TTAA	2 cut(s)	101, 405
Tru9I	TTAA	2 cut(s)	101, 405
TscAI	CASTG	1 cut(s)	47
TspDTI	ATGAA	2 cut(s)	377, 417
TspGWI	ACGGA	1 cut(s)	386
TspRI	CASTG	1 cut(s)	47
XapI	RAATTY	1 cut(s)	457
XbaI	TCTAGA	1 cut(s)	410
XhoI	CTCGAG	2 cut(s)	255, 447
XspI	CTAG	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.