RLG00000022821

RNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0015743
Physical Location & Seq
Reverse (-)
12737407 .. 12738973
1567 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022821

Sequence Viewer

Length: 666 bp
ATGCAAGTCGAGTCCGCGGCGGACAAAAGCCCTAACTCGGAGCTCCCTCCCAAATCCAGAGAAGAAGGCGAGCTCTCTTCGGATGATAATGACGAAAATCCTGTTCTCTCGGTTGCACGTTCCACTGGTACTACAGGGCCCATGCTGGTGAACAAATTCACCCATGGGAATCAAGTGGGGAAGGCTGCATCTCCTGCAAGCTCTGCTGATATTCAGTGCCAAACCTCCAAGCAACCTACTTCCCAGAAGAGCAATGATGCGAACAGCGTACCAACACCTGGATGGCGTCCTCCACGTGCCCACTCGGGGCCCAACAATAATCTTGTGATAAGCTTCTCAGACGATGACAGTCAGAGTGATTCTGAAGAAAAAGAGCGTGGGAAACTAAAAGCTTTACAAACTAAAAGTAATATGGCTCGAGGGAATGCTAATGGAAAACCACCCATTTCTTCACTTGCAAAACCAAACAAGTTGGGACAGCCTGCCAGAAATGTGAACAAAGTAATGCCCAAAAAGTTGTCTATGAATGGCACATTTATGACATCAATGGCGAATATCCGTGGAGTTAATTCTAGAGATTCTGTGCCTTCATCAGTTGAGCAAGGATCTCGAGCTGGAAATTTCAATTCCGGCAACAAAAATATAGTGAACAGAGAGCGATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3H1

Protein Analysis

222

Amino Acids

23.54

Weight (kDa)

9.64

Isoelectric Point (pI)

45.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 664
AccB7I CCANNNNNTGG 1 cut(s) 278
AccII CGCG 1 cut(s) 17
AciI CCGC 3 cut(s) 15, 17, 20
AclWI GGATC 1 cut(s) 613
AcsI RAATTY 2 cut(s) 155, 619
AcuI CTGAAG 1 cut(s) 384
AcvI CACGTG 1 cut(s) 296
AcyI GRCGYC 1 cut(s) 286
AfaI GTAC 2 cut(s) 130, 270
AfiI CCNNNNNNNGG 3 cut(s) 37, 278, 306
AgsI TTSAA 1 cut(s) 625
AjnI CCWGG 1 cut(s) 277
AluBI AGCT 6 cut(s) 43, 73, 201, 333, 392, 614
AluI AGCT 6 cut(s) 43, 73, 201, 333, 392, 614
Alw21I GWGCWC 2 cut(s) 45, 75
AlwI GGATC 1 cut(s) 613
Ama87I CYCGRG 3 cut(s) 304, 417, 609
AoxI GGCC 2 cut(s) 137, 308
ApaI GGGCCC 2 cut(s) 141, 312
ApeKI GCWGC 1 cut(s) 185
ApoI RAATTY 2 cut(s) 155, 619
Asp700I GAANNNNTTC 1 cut(s) 155
AspS9I GGNCC 4 cut(s) 137, 138, 308, 309
AsuHPI GGTGA 2 cut(s) 151, 160
AvaI CYCGRG 3 cut(s) 304, 417, 609
BaeGI GKGCMC 3 cut(s) 141, 301, 312
BanII GRGCYC 4 cut(s) 45, 75, 141, 312
BbrPI CACGTG 1 cut(s) 296
Bbv12I GWGCWC 2 cut(s) 45, 75
BbvI GCAGC 1 cut(s) 172
BccI CCATC 1 cut(s) 276
BcgI CGANNNNNNTGC 2 cut(s) 590, 624
BciT130I CCWGG 1 cut(s) 279
BfaI CTAG 1 cut(s) 573
BfmI CTRYAG 1 cut(s) 132
BisI GCNGC 2 cut(s) 18, 186
BlsI GCNGC 2 cut(s) 19, 187
Bme1390I CCNGG 1 cut(s) 279
BmeT110I CYCGRG 3 cut(s) 304, 417, 609
BmgT120I GGNCC 4 cut(s) 137, 138, 308, 309
BmiI GGNNCC 3 cut(s) 139, 309, 310
BmrFI CCNGG 1 cut(s) 279
BmsI GCATC 2 cut(s) 197, 247
BsaAI YACGTR 1 cut(s) 296
BsaHI GRCGYC 1 cut(s) 286
BsaJI CCNNGG 3 cut(s) 15, 163, 559
Bsc4I CCNNNNNNNGG 3 cut(s) 37, 278, 306
Bse1I ACTGG 1 cut(s) 130
Bse3DI GCAATG 1 cut(s) 259
BseBI CCWGG 1 cut(s) 279
BseDI CCNNGG 3 cut(s) 15, 163, 559
BseGI GGATG 2 cut(s) 88, 287
BseLI CCNNNNNNNGG 3 cut(s) 37, 278, 306
BseMI GCAATG 1 cut(s) 259
BseMII CTCAG 1 cut(s) 351
BseNI ACTGG 1 cut(s) 130
BseSI GKGCMC 3 cut(s) 141, 301, 312
BseXI GCAGC 1 cut(s) 172
Bsh1236I CGCG 1 cut(s) 17
BshFI GGCC 2 cut(s) 139, 310
BsiHKAI GWGCWC 2 cut(s) 45, 75
BsiHKCI CYCGRG 3 cut(s) 304, 417, 609
BsiSI CCGG 1 cut(s) 630
BslFI GGGAC 1 cut(s) 489
BslI CCNNNNNNNGG 3 cut(s) 37, 278, 306
BsmFI GGGAC 1 cut(s) 489
BsmI GAATGC 1 cut(s) 430
BsnI GGCC 2 cut(s) 139, 310
BsoBI CYCGRG 3 cut(s) 304, 417, 609
Bsp120I GGGCCC 2 cut(s) 137, 308
Bsp1286I GDGCHC 5 cut(s) 45, 75, 141, 301, 312
Bsp143I GATC 1 cut(s) 605
Bsp19I CCATGG 1 cut(s) 163
BspACI CCGC 3 cut(s) 15, 17, 20
BspANI GGCC 2 cut(s) 139, 310
BspCNI CTCAG 1 cut(s) 350
BspFNI CGCG 1 cut(s) 17
BspLI GGNNCC 3 cut(s) 139, 309, 310
BspPI GGATC 1 cut(s) 613
BspQI GCTCTTC 1 cut(s) 242
BsrDI GCAATG 1 cut(s) 259
BsrI ACTGG 1 cut(s) 130
BssECI CCNNGG 3 cut(s) 15, 163, 559
BssMI GATC 1 cut(s) 605
BssNI GRCGYC 1 cut(s) 286
BssT1I CCWWGG 1 cut(s) 163
Bst2UI CCWGG 1 cut(s) 279
Bst4CI ACNGT 1 cut(s) 350
Bst6I CTCTTC 2 cut(s) 82, 242
BstACI GRCGYC 1 cut(s) 286
BstAPI GCANNNNNTGC 2 cut(s) 194, 203
BstBAI YACGTR 1 cut(s) 296
BstC8I GCNNGC 3 cut(s) 71, 199, 483
BstDEI CTNAG 1 cut(s) 337
BstDSI CCRYGG 3 cut(s) 15, 163, 559
BstF5I GGATG 2 cut(s) 88, 287
BstFNI CGCG 1 cut(s) 17
BstKTI GATC 1 cut(s) 608
BstMBI GATC 1 cut(s) 605
BstMWI GCNNNNNNNGC 2 cut(s) 194, 203
BstNI CCWGG 1 cut(s) 279
BstSCI CCNGG 1 cut(s) 277
BstSFI CTRYAG 1 cut(s) 132
BstSLI GKGCMC 3 cut(s) 141, 301, 312
BstUI CGCG 1 cut(s) 17
BstV1I GCAGC 1 cut(s) 172
BstX2I RGATCY 1 cut(s) 605
BstYI RGATCY 1 cut(s) 605
BsuRI GGCC 2 cut(s) 139, 310
BtgI CCRYGG 3 cut(s) 15, 163, 559
BtsCI GGATG 2 cut(s) 88, 287
BtsIMutI CAGTG 2 cut(s) 123, 221
Cac8I GCNNGC 3 cut(s) 71, 199, 483
Cfr13I GGNCC 4 cut(s) 137, 138, 308, 309
Cfr42I CCGCGG 1 cut(s) 18
CseI GACGC 1 cut(s) 275
Csp6I GTAC 2 cut(s) 129, 269
CviAII CATG 2 cut(s) 142, 164
CviQI GTAC 2 cut(s) 129, 269
DdeI CTNAG 1 cut(s) 337
DpnI GATC 1 cut(s) 607
DpnII GATC 1 cut(s) 605
Eam1104I CTCTTC 2 cut(s) 82, 242
EarI CTCTTC 2 cut(s) 82, 242
EciI GGCGGA 1 cut(s) 35
Ecl136II GAGCTC 2 cut(s) 43, 73
Eco130I CCWWGG 1 cut(s) 163
Eco24I GRGCYC 4 cut(s) 45, 75, 141, 312
Eco53kI GAGCTC 2 cut(s) 43, 73
Eco57I CTGAAG 1 cut(s) 384
Eco72I CACGTG 1 cut(s) 296
Eco88I CYCGRG 3 cut(s) 304, 417, 609
EcoICRI GAGCTC 2 cut(s) 43, 73
EcoO109I RGGNCCY 2 cut(s) 137, 308
EcoRII CCWGG 1 cut(s) 277
EcoT14I CCWWGG 1 cut(s) 163
EcoT38I GRGCYC 4 cut(s) 45, 75, 141, 312
ErhI CCWWGG 1 cut(s) 163
FaeI CATG 2 cut(s) 145, 167
FaiI YATR 7 cut(s) 143, 165, 413, 524, 539, 644, 664
FaqI GGGAC 1 cut(s) 489
FatI CATG 2 cut(s) 141, 163
Fnu4HI GCNGC 2 cut(s) 18, 186
FokI GGATG 2 cut(s) 95, 294
FriOI GRGCYC 4 cut(s) 45, 75, 141, 312
Fsp4HI GCNGC 2 cut(s) 18, 186
FspBI CTAG 1 cut(s) 573
GluI GCNGC 2 cut(s) 18, 186
HaeIII GGCC 2 cut(s) 139, 310
HapII CCGG 1 cut(s) 630
HgaI GACGC 1 cut(s) 275
Hin1I GRCGYC 1 cut(s) 286
Hin1II CATG 2 cut(s) 145, 167
HindIII AAGCTT 2 cut(s) 331, 390
HinfI GANTC 4 cut(s) 11, 169, 359, 578
HpaII CCGG 1 cut(s) 630
HphI GGTGA 2 cut(s) 151, 160
Hpy166II GTNNAC 3 cut(s) 151, 496, 649
Hpy188I TCNGA 5 cut(s) 40, 82, 340, 354, 364
Hpy188III TCNNGA 3 cut(s) 57, 573, 609
Hpy8I GTNNAC 3 cut(s) 151, 496, 649
HpyAV CCTTC 3 cut(s) 59, 175, 597
HpyCH4III ACNGT 1 cut(s) 350
HpyCH4IV ACGT 2 cut(s) 118, 295
HpyCH4V TGCA 5 cut(s) 4, 116, 188, 197, 458
HpyF10VI GCNNNNNNNGC 2 cut(s) 194, 203
HpyF3I CTNAG 1 cut(s) 337
HpySE526I ACGT 2 cut(s) 118, 295
Hsp92I GRCGYC 1 cut(s) 286
Hsp92II CATG 2 cut(s) 145, 167
KspI CCGCGG 1 cut(s) 18
Kzo9I GATC 1 cut(s) 605
LguI GCTCTTC 1 cut(s) 242
LmnI GCTCC 2 cut(s) 40, 48
Lsp1109I GCAGC 1 cut(s) 172
LweI GCATC 2 cut(s) 197, 247
MaeI CTAG 1 cut(s) 573
MaeII ACGT 2 cut(s) 118, 295
MalI GATC 1 cut(s) 607
MboI GATC 1 cut(s) 605
MboII GAAGA 5 cut(s) 69, 74, 259, 377, 441
MflI RGATCY 1 cut(s) 605
MhlI GDGCHC 5 cut(s) 45, 75, 141, 301, 312
MluCI AATT 4 cut(s) 155, 568, 619, 625
MlyI GAGTC 1 cut(s) 20
MnlI CCTC 4 cut(s) 57, 235, 300, 413
MroXI GAANNNNTTC 1 cut(s) 155
MseI TTAA 1 cut(s) 567
MslI CAYNNNNRTG 3 cut(s) 146, 280, 536
MspA1I CMGCKG 1 cut(s) 17
MspI CCGG 1 cut(s) 630
MspR9I CCNGG 1 cut(s) 279
Mva1269I GAATGC 1 cut(s) 430
MvaI CCWGG 1 cut(s) 279
MvnI CGCG 1 cut(s) 17
MwoI GCNNNNNNNGC 2 cut(s) 194, 203
NcoI CCATGG 1 cut(s) 163
NdeII GATC 1 cut(s) 605
NlaIII CATG 2 cut(s) 145, 167
NlaIV GGNNCC 3 cut(s) 139, 309, 310
PaeR7I CTCGAG 2 cut(s) 417, 609
PciSI GCTCTTC 1 cut(s) 242
PctI GAATGC 1 cut(s) 430
PdmI GAANNNNTTC 1 cut(s) 155
PfeI GAWTC 3 cut(s) 169, 359, 578
PflMI CCANNNNNTGG 1 cut(s) 278
PkrI GCNGC 2 cut(s) 19, 187
PleI GAGTC 1 cut(s) 19
PmaCI CACGTG 1 cut(s) 296
PmlI CACGTG 1 cut(s) 296
PpsI GAGTC 1 cut(s) 19
Ppu21I YACGTR 1 cut(s) 296
PsiI TTATAA 1 cut(s) 664
Psp124BI GAGCTC 2 cut(s) 45, 75
Psp6I CCWGG 1 cut(s) 277
PspCI CACGTG 1 cut(s) 296
PspGI CCWGG 1 cut(s) 277
PspN4I GGNNCC 3 cut(s) 139, 309, 310
PspOMI GGGCCC 2 cut(s) 137, 308
PspPI GGNCC 4 cut(s) 137, 138, 308, 309
PspXI VCTCGAGB 1 cut(s) 417
PsuI RGATCY 1 cut(s) 605
RsaI GTAC 2 cut(s) 130, 270
RsaNI GTAC 2 cut(s) 129, 269
RseI CAYNNNNRTG 3 cut(s) 146, 280, 536
SacI GAGCTC 2 cut(s) 45, 75
SacII CCGCGG 1 cut(s) 18
SapI GCTCTTC 1 cut(s) 242
SaqAI TTAA 1 cut(s) 567
SatI GCNGC 2 cut(s) 18, 186
Sau3AI GATC 1 cut(s) 605
Sau96I GGNCC 4 cut(s) 137, 138, 308, 309
SchI GAGTC 1 cut(s) 20
ScrFI CCNGG 1 cut(s) 279
SduI GDGCHC 5 cut(s) 45, 75, 141, 301, 312
SfaNI GCATC 2 cut(s) 197, 247
SfcI CTRYAG 1 cut(s) 132
Sfr274I CTCGAG 2 cut(s) 417, 609
Sfr303I CCGCGG 1 cut(s) 18
SgrBI CCGCGG 1 cut(s) 18
SlaI CTCGAG 2 cut(s) 417, 609
SmiMI CAYNNNNRTG 3 cut(s) 146, 280, 536
SmlI CTYRAG 2 cut(s) 417, 609
SmoI CTYRAG 2 cut(s) 417, 609
Sse9I AATT 4 cut(s) 155, 568, 619, 625
SsiI CCGC 3 cut(s) 15, 17, 20
SspMI CTAG 1 cut(s) 573
SstI GAGCTC 2 cut(s) 45, 75
StyD4I CCNGG 1 cut(s) 277
StyI CCWWGG 1 cut(s) 163
TaaI ACNGT 1 cut(s) 350
TaiI ACGT 2 cut(s) 121, 298
TaqI TCGA 3 cut(s) 9, 418, 610
TasI AATT 4 cut(s) 155, 568, 619, 625
TauI GCSGC 1 cut(s) 20
TfiI GAWTC 3 cut(s) 169, 359, 578
Tru1I TTAA 1 cut(s) 567
Tru9I TTAA 1 cut(s) 567
TscAI CASTG 2 cut(s) 130, 221
TseI GCWGC 1 cut(s) 185
TspDTI ATGAA 2 cut(s) 539, 579
TspGWI ACGGA 1 cut(s) 548
TspRI CASTG 2 cut(s) 130, 221
Van91I CCANNNNNTGG 1 cut(s) 278
XapI RAATTY 2 cut(s) 155, 619
XbaI TCTAGA 1 cut(s) 572
XcmI CCANNNNNNNNNTGG 1 cut(s) 279
XhoI CTCGAG 2 cut(s) 417, 609
XmnI GAANNNNTTC 1 cut(s) 155
XspI CTAG 1 cut(s) 573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.