Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009049.1

Orthogroup ID

OG0015743

Physical Location & Seq

Genomic Coordinates Reverse (-)

41056 .. 41775

Gene Structure 720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009049.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

atgggtactctctatccacaggaaagtcctgttttctctgttgcacattccactgctaccagtttacttgctccagggcccatgctggttccaccagtgaacaaattcacccaagggaatcaagcggggaaggctgtatctcccgcaagctctgctggtattcagtgccaaatctccaagcaacctacttcccagaagaacaatgatgcgaacagagcaccattaaaacgtgctacacctggatggcgtcccccatctgcccacttggggcccaacaataatcttgtgataagcttctcaaatgatgacagtcagagcgattctgaagaaaaagagcgtgggaaactaaaagctttacaaactataagcaacatgacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3H1

Protein Analysis

126

Amino Acids

13.34

Weight (kDa)

9.52

Isoelectric Point (pI)

53.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015743)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0492191
rosa_laevigata	RLG00000022821 RLG00000022828
rosa_multiflora	Rmu_sc0009049.1_g000012 Rmu_sc0009109.1_g000004 Rmu_sc0014853.1_g000001 Rmu_sc0020121.1_g000002 Rmu_sc0023760.1_g000002
rosa_roxburghii	Rroxscaffold_6G00388500
rosa_rugosa	Rorug02G0268100
rosa_samantha	Rh3AG295300 Rh3AG302400 Rh3CG332800 Rh3CG332900 Rh3DG334800 Rh6AG108000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	125, 144
AcsI	RAATTY	1 cut(s)	104
AcuI	CTGAAG	1 cut(s)	345
AcyI	GRCGYC	1 cut(s)	247
AfaI	GTAC	1 cut(s)	7
AfiI	CCNNNNNNNGG	1 cut(s)	267
AjnI	CCWGG	2 cut(s)	73, 238
AluBI	AGCT	3 cut(s)	150, 294, 353
AluI	AGCT	3 cut(s)	150, 294, 353
Alw21I	GWGCWC	1 cut(s)	220
AoxI	GGCC	2 cut(s)	77, 269
ApaI	GGGCCC	2 cut(s)	81, 273
ApoI	RAATTY	1 cut(s)	104
Asp700I	GAANNNNTTC	1 cut(s)	104
AspS9I	GGNCC	4 cut(s)	77, 78, 269, 270
AsuHPI	GGTGA	1 cut(s)	100
BaeGI	GKGCMC	2 cut(s)	81, 273
BanII	GRGCYC	2 cut(s)	81, 273
Bbv12I	GWGCWC	1 cut(s)	220
BccI	CCATC	2 cut(s)	237, 262
BciT130I	CCWGG	2 cut(s)	75, 240
Bme1390I	CCNGG	2 cut(s)	75, 240
BmgT120I	GGNCC	4 cut(s)	77, 78, 269, 270
BmiI	GGNNCC	4 cut(s)	79, 90, 270, 271
BmrFI	CCNGG	2 cut(s)	75, 240
BmsI	GCATC	1 cut(s)	196
BpmI	CTGGAG	1 cut(s)	57
BsaHI	GRCGYC	1 cut(s)	247
BsaJI	CCNNGG	2 cut(s)	74, 112
Bsc4I	CCNNNNNNNGG	1 cut(s)	267
Bse1I	ACTGG	2 cut(s)	60, 95
BseBI	CCWGG	2 cut(s)	75, 240
BseDI	CCNNGG	2 cut(s)	74, 112
BseGI	GGATG	1 cut(s)	248
BseLI	CCNNNNNNNGG	1 cut(s)	267
BseNI	ACTGG	2 cut(s)	60, 95
BseSI	GKGCMC	2 cut(s)	81, 273
BshFI	GGCC	2 cut(s)	79, 271
BsiHKAI	GWGCWC	1 cut(s)	220
BslFI	GGGAC	1 cut(s)	234
BslI	CCNNNNNNNGG	1 cut(s)	267
BsmFI	GGGAC	1 cut(s)	234
BsnI	GGCC	2 cut(s)	79, 271
Bsp120I	GGGCCC	2 cut(s)	77, 269
Bsp1286I	GDGCHC	3 cut(s)	81, 220, 273
BspACI	CCGC	2 cut(s)	125, 144
BspANI	GGCC	2 cut(s)	79, 271
BspLI	GGNNCC	4 cut(s)	79, 90, 270, 271
BsrI	ACTGG	2 cut(s)	60, 95
BssECI	CCNNGG	2 cut(s)	74, 112
BssNI	GRCGYC	1 cut(s)	247
BssT1I	CCWWGG	1 cut(s)	112
Bst2UI	CCWGG	2 cut(s)	75, 240
Bst4CI	ACNGT	1 cut(s)	311
BstACI	GRCGYC	1 cut(s)	247
BstAPI	GCANNNNNTGC	1 cut(s)	152
BstC8I	GCNNGC	1 cut(s)	148
BstF5I	GGATG	1 cut(s)	248
BstMWI	GCNNNNNNNGC	3 cut(s)	131, 152, 215
BstNI	CCWGG	2 cut(s)	75, 240
BstSCI	CCNGG	2 cut(s)	73, 238
BstSLI	GKGCMC	2 cut(s)	81, 273
BsuRI	GGCC	2 cut(s)	79, 271
BtsCI	GGATG	1 cut(s)	248
BtsI	GCAGTG	1 cut(s)	51
BtsIMutI	CAGTG	3 cut(s)	51, 102, 170
Cac8I	GCNNGC	1 cut(s)	148
Cfr13I	GGNCC	4 cut(s)	77, 78, 269, 270
CseI	GACGC	1 cut(s)	236
Csp6I	GTAC	1 cut(s)	6
CviAII	CATG	2 cut(s)	82, 373
CviJI	RGCY	6 cut(s)	79, 134, 150, 271, 294, 353
CviKI_1	RGCY	6 cut(s)	79, 134, 150, 271, 294, 353
CviQI	GTAC	1 cut(s)	6
Eco130I	CCWWGG	1 cut(s)	112
Eco24I	GRGCYC	2 cut(s)	81, 273
Eco57I	CTGAAG	1 cut(s)	345
EcoO109I	RGGNCCY	2 cut(s)	77, 269
EcoRII	CCWGG	2 cut(s)	73, 238
EcoT14I	CCWWGG	1 cut(s)	112
EcoT38I	GRGCYC	2 cut(s)	81, 273
ErhI	CCWWGG	1 cut(s)	112
FaeI	CATG	2 cut(s)	85, 376
FaiI	YATR	3 cut(s)	83, 365, 374
FaqI	GGGAC	1 cut(s)	234
FatI	CATG	2 cut(s)	81, 372
FauI	CCCGC	2 cut(s)	118, 151
FokI	GGATG	1 cut(s)	255
FriOI	GRGCYC	2 cut(s)	81, 273
GsuI	CTGGAG	1 cut(s)	57
HaeIII	GGCC	2 cut(s)	79, 271
HgaI	GACGC	1 cut(s)	236
Hin1I	GRCGYC	1 cut(s)	247
Hin1II	CATG	2 cut(s)	85, 376
HindIII	AAGCTT	2 cut(s)	292, 351
HinfI	GANTC	2 cut(s)	118, 320
HphI	GGTGA	1 cut(s)	100
Hpy166II	GTNNAC	2 cut(s)	65, 100
Hpy188I	TCNGA	2 cut(s)	315, 325
Hpy8I	GTNNAC	2 cut(s)	65, 100
HpyAV	CCTTC	1 cut(s)	124
HpyCH4III	ACNGT	1 cut(s)	311
HpyCH4IV	ACGT	1 cut(s)	229
HpyCH4V	TGCA	1 cut(s)	44
HpyF10VI	GCNNNNNNNGC	3 cut(s)	131, 152, 215
HpySE526I	ACGT	1 cut(s)	229
Hsp92I	GRCGYC	1 cut(s)	247
Hsp92II	CATG	2 cut(s)	85, 376
LmnI	GCTCC	1 cut(s)	76
LweI	GCATC	1 cut(s)	196
MaeII	ACGT	1 cut(s)	229
MboII	GAAGA	2 cut(s)	208, 338
MhlI	GDGCHC	3 cut(s)	81, 220, 273
MluCI	AATT	1 cut(s)	104
MroXI	GAANNNNTTC	1 cut(s)	104
MseI	TTAA	1 cut(s)	224
MslI	CAYNNNNRTG	1 cut(s)	241
MspR9I	CCNGG	2 cut(s)	75, 240
MvaI	CCWGG	2 cut(s)	75, 240
MwoI	GCNNNNNNNGC	3 cut(s)	131, 152, 215
NlaIII	CATG	2 cut(s)	85, 376
NlaIV	GGNNCC	4 cut(s)	79, 90, 270, 271
PdmI	GAANNNNTTC	1 cut(s)	104
PfeI	GAWTC	2 cut(s)	118, 320
Psp6I	CCWGG	2 cut(s)	73, 238
PspGI	CCWGG	2 cut(s)	73, 238
PspN4I	GGNNCC	4 cut(s)	79, 90, 270, 271
PspOMI	GGGCCC	2 cut(s)	77, 269
PspPI	GGNCC	4 cut(s)	77, 78, 269, 270
RsaI	GTAC	1 cut(s)	7
RsaNI	GTAC	1 cut(s)	6
RseI	CAYNNNNRTG	1 cut(s)	241
SaqAI	TTAA	1 cut(s)	224
Sau96I	GGNCC	4 cut(s)	77, 78, 269, 270
ScrFI	CCNGG	2 cut(s)	75, 240
SduI	GDGCHC	3 cut(s)	81, 220, 273
SetI	ASST	6 cut(s)	152, 187, 232, 241, 296, 355
SfaNI	GCATC	1 cut(s)	196
SmiMI	CAYNNNNRTG	1 cut(s)	241
Sse9I	AATT	1 cut(s)	104
SsiI	CCGC	2 cut(s)	125, 144
StyD4I	CCNGG	2 cut(s)	73, 238
StyI	CCWWGG	1 cut(s)	112
TaaI	ACNGT	1 cut(s)	311
TaiI	ACGT	1 cut(s)	232
TasI	AATT	1 cut(s)	104
TfiI	GAWTC	2 cut(s)	118, 320
Tru1I	TTAA	1 cut(s)	224
Tru9I	TTAA	1 cut(s)	224
TscAI	CASTG	3 cut(s)	58, 102, 170
TspRI	CASTG	3 cut(s)	58, 102, 170
XapI	RAATTY	1 cut(s)	104
XmnI	GAANNNNTTC	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.