Rroxscaffold_6G00388500

RNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0015743
Physical Location & Seq
Reverse (-)
1460466 .. 1462124
1659 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00388500.1

Sequence Viewer

Length: 735 bp
ATGGGTACTCTTTATCCAATATCCACAGGAAAATCCTGTTCTCTCGGTTGCACGTTCCACTGGTACTACAGGGCCCATGCTGGTGAACAAATTCACCCATGGGAATCAAGGAAGGCTGTATCTCCTGCAAGCTCTGCTGATATTCAGTGCCAAACCTCCAAGCAACCTACTTCCCAGAAGAGCAATGATGCGAACAGAGTACCAACACCTGGATGGCGTCCTCCACGTGCCCACTCGGGGCCCAACAATAATCTTGTGATAAGCTTCTCAGACGATGACAGTCAGAGTGATTCTGAAGAAAAAGAGCATGGGAAACTAAAAGCTTTACAAACTAAAAGTAATATGGCTCGAGGGAATGCTAATGGAAAACCACCCATTTCTTCACTTGCAAAACCAAACAAGTTGGGACAGCCTGCCAGAAATGTGAACAAAGTAATGCCCAAAAAGTTGTCTATGAATGGCACATTTATGACATCAATGGCGAATATCCGTGGAGTTAATTCTAGAGATTCTGTGCCTTCATCAGTTGAGCAAGGATCTCGAGCTGGAAATTTCAATTCCAGCAACAAAAATATACTCGACAATGCTCTGGTTCGCGCTACCAAGTCTGGTCCTAACTTGCTAGACCGCCTCCAGTCCAACAAGGGCTTCCCAGCCGGCGACAACCTTGAACTCGACCCCTTCCTTAGCCGAAACCCCAACTCCTCCTCGACAAACCCGAGTCCCAATGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3H1

Protein Analysis

244

Amino Acids

26.3

Weight (kDa)

9.85

Isoelectric Point (pI)

52.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 209
AccII CGCG 1 cut(s) 597
AciI CCGC 1 cut(s) 628
AclWI GGATC 1 cut(s) 544
AcsI RAATTY 2 cut(s) 90, 550
AcuI CTGAAG 1 cut(s) 315
AcvI CACGTG 1 cut(s) 227
AcyI GRCGYC 1 cut(s) 217
AfaI GTAC 3 cut(s) 7, 65, 201
AfiI CCNNNNNNNGG 2 cut(s) 209, 237
AgsI TTSAA 2 cut(s) 556, 671
AjnI CCWGG 1 cut(s) 208
AjuI GAANNNNNNNTTGG 2 cut(s) 632, 664
AluBI AGCT 4 cut(s) 132, 264, 323, 545
AluI AGCT 4 cut(s) 132, 264, 323, 545
AlwI GGATC 1 cut(s) 544
Ama87I CYCGRG 4 cut(s) 235, 348, 540, 718
AoxI GGCC 2 cut(s) 72, 239
ApaI GGGCCC 2 cut(s) 76, 243
ApoI RAATTY 2 cut(s) 90, 550
Asp700I GAANNNNTTC 1 cut(s) 90
AspLEI GCGC 1 cut(s) 599
AspS9I GGNCC 5 cut(s) 72, 73, 239, 240, 611
AsuHPI GGTGA 2 cut(s) 86, 95
AvaI CYCGRG 4 cut(s) 235, 348, 540, 718
AvaII GGWCC 1 cut(s) 611
BaeGI GKGCMC 3 cut(s) 76, 232, 243
BanII GRGCYC 2 cut(s) 76, 243
BbrPI CACGTG 1 cut(s) 227
BccI CCATC 1 cut(s) 207
BcgI CGANNNNNNTGC 2 cut(s) 521, 555
BciT130I CCWGG 1 cut(s) 210
BfaI CTAG 3 cut(s) 504, 623, 733
BfmI CTRYAG 1 cut(s) 67
Bme1390I CCNGG 1 cut(s) 210
Bme18I GGWCC 1 cut(s) 611
BmeT110I CYCGRG 4 cut(s) 235, 348, 540, 718
BmgT120I GGNCC 5 cut(s) 72, 73, 239, 240, 611
BmiI GGNNCC 3 cut(s) 74, 240, 241
BmrFI CCNGG 1 cut(s) 210
BmsI GCATC 1 cut(s) 178
BpmI CTGGAG 1 cut(s) 617
Bpu10I CCTNAGC 1 cut(s) 686
BsaAI YACGTR 1 cut(s) 227
BsaHI GRCGYC 1 cut(s) 217
BsaJI CCNNGG 2 cut(s) 98, 490
BsaXI ACNNNNNCTCC 2 cut(s) 686, 716
Bsc4I CCNNNNNNNGG 2 cut(s) 209, 237
Bse118I RCCGGY 1 cut(s) 656
Bse1I ACTGG 2 cut(s) 65, 634
Bse3DI GCAATG 1 cut(s) 190
BseBI CCWGG 1 cut(s) 210
BseDI CCNNGG 2 cut(s) 98, 490
BseGI GGATG 1 cut(s) 218
BseLI CCNNNNNNNGG 2 cut(s) 209, 237
BseMI GCAATG 1 cut(s) 190
BseMII CTCAG 1 cut(s) 282
BseNI ACTGG 2 cut(s) 65, 634
BseRI GAGGAG 2 cut(s) 694, 697
BseSI GKGCMC 3 cut(s) 76, 232, 243
BseYI CCCAGC 1 cut(s) 652
Bsh1236I CGCG 1 cut(s) 597
BshFI GGCC 2 cut(s) 74, 241
BsiHKCI CYCGRG 4 cut(s) 235, 348, 540, 718
BsiSI CCGG 1 cut(s) 657
BslFI GGGAC 2 cut(s) 420, 708
BslI CCNNNNNNNGG 2 cut(s) 209, 237
BsmFI GGGAC 2 cut(s) 420, 708
BsmI GAATGC 1 cut(s) 361
BsnI GGCC 2 cut(s) 74, 241
BsoBI CYCGRG 4 cut(s) 235, 348, 540, 718
Bsp120I GGGCCC 2 cut(s) 72, 239
Bsp1286I GDGCHC 3 cut(s) 76, 232, 243
Bsp143I GATC 1 cut(s) 536
Bsp19I CCATGG 1 cut(s) 98
BspACI CCGC 1 cut(s) 628
BspANI GGCC 2 cut(s) 74, 241
BspCNI CTCAG 1 cut(s) 281
BspFNI CGCG 1 cut(s) 597
BspLI GGNNCC 3 cut(s) 74, 240, 241
BspPI GGATC 1 cut(s) 544
BspQI GCTCTTC 1 cut(s) 173
BsrDI GCAATG 1 cut(s) 190
BsrFI RCCGGY 1 cut(s) 656
BsrI ACTGG 2 cut(s) 65, 634
BssAI RCCGGY 1 cut(s) 656
BssECI CCNNGG 2 cut(s) 98, 490
BssMI GATC 1 cut(s) 536
BssNI GRCGYC 1 cut(s) 217
BssT1I CCWWGG 1 cut(s) 98
Bst2UI CCWGG 1 cut(s) 210
Bst4CI ACNGT 1 cut(s) 281
Bst6I CTCTTC 1 cut(s) 173
BstACI GRCGYC 1 cut(s) 217
BstAPI GCANNNNNTGC 1 cut(s) 134
BstBAI YACGTR 1 cut(s) 227
BstC8I GCNNGC 3 cut(s) 130, 414, 658
BstDEI CTNAG 2 cut(s) 268, 686
BstDSI CCRYGG 2 cut(s) 98, 490
BstF5I GGATG 1 cut(s) 218
BstFNI CGCG 1 cut(s) 597
BstHHI GCGC 1 cut(s) 599
BstKTI GATC 1 cut(s) 539
BstMBI GATC 1 cut(s) 536
BstMWI GCNNNNNNNGC 1 cut(s) 134
BstNI CCWGG 1 cut(s) 210
BstSCI CCNGG 1 cut(s) 208
BstSFI CTRYAG 1 cut(s) 67
BstSLI GKGCMC 3 cut(s) 76, 232, 243
BstUI CGCG 1 cut(s) 597
BstX2I RGATCY 1 cut(s) 536
BstYI RGATCY 1 cut(s) 536
BsuRI GGCC 2 cut(s) 74, 241
BtgI CCRYGG 2 cut(s) 98, 490
BtsCI GGATG 1 cut(s) 218
BtsIMutI CAGTG 2 cut(s) 58, 152
Cac8I GCNNGC 3 cut(s) 130, 414, 658
CfoI GCGC 1 cut(s) 599
Cfr10I RCCGGY 1 cut(s) 656
Cfr13I GGNCC 5 cut(s) 72, 73, 239, 240, 611
CseI GACGC 1 cut(s) 206
Csp6I GTAC 3 cut(s) 6, 64, 200
CviAII CATG 3 cut(s) 77, 99, 308
CviQI GTAC 3 cut(s) 6, 64, 200
DdeI CTNAG 2 cut(s) 268, 686
DpnI GATC 1 cut(s) 538
DpnII GATC 1 cut(s) 536
Eam1104I CTCTTC 1 cut(s) 173
EarI CTCTTC 1 cut(s) 173
Eco130I CCWWGG 1 cut(s) 98
Eco24I GRGCYC 2 cut(s) 76, 243
Eco47I GGWCC 1 cut(s) 611
Eco57I CTGAAG 1 cut(s) 315
Eco72I CACGTG 1 cut(s) 227
Eco88I CYCGRG 4 cut(s) 235, 348, 540, 718
EcoO109I RGGNCCY 2 cut(s) 72, 239
EcoRII CCWGG 1 cut(s) 208
EcoT14I CCWWGG 1 cut(s) 98
EcoT38I GRGCYC 2 cut(s) 76, 243
ErhI CCWWGG 1 cut(s) 98
FaeI CATG 3 cut(s) 80, 102, 311
FaiI YATR 7 cut(s) 78, 100, 309, 344, 455, 470, 575
FaqI GGGAC 2 cut(s) 420, 708
FatI CATG 3 cut(s) 76, 98, 307
FokI GGATG 1 cut(s) 225
FriOI GRGCYC 2 cut(s) 76, 243
FspBI CTAG 3 cut(s) 504, 623, 733
GlaI GCGC 1 cut(s) 598
GsaI CCCAGC 1 cut(s) 656
GsuI CTGGAG 1 cut(s) 617
HaeIII GGCC 2 cut(s) 74, 241
HapII CCGG 1 cut(s) 657
HgaI GACGC 1 cut(s) 206
HhaI GCGC 1 cut(s) 599
Hin1I GRCGYC 1 cut(s) 217
Hin1II CATG 3 cut(s) 80, 102, 311
Hin6I GCGC 1 cut(s) 597
HinP1I GCGC 1 cut(s) 597
HindIII AAGCTT 2 cut(s) 262, 321
HinfI GANTC 4 cut(s) 104, 290, 509, 721
HpaII CCGG 1 cut(s) 657
HphI GGTGA 2 cut(s) 86, 95
Hpy166II GTNNAC 2 cut(s) 86, 427
Hpy188I TCNGA 3 cut(s) 271, 285, 295
Hpy188III TCNNGA 2 cut(s) 504, 540
Hpy8I GTNNAC 2 cut(s) 86, 427
HpyAV CCTTC 3 cut(s) 106, 528, 691
HpyCH4III ACNGT 1 cut(s) 281
HpyCH4IV ACGT 2 cut(s) 53, 226
HpyCH4V TGCA 3 cut(s) 51, 128, 389
HpyF10VI GCNNNNNNNGC 1 cut(s) 134
HpyF3I CTNAG 2 cut(s) 268, 686
HpySE526I ACGT 2 cut(s) 53, 226
Hsp92I GRCGYC 1 cut(s) 217
Hsp92II CATG 3 cut(s) 80, 102, 311
HspAI GCGC 1 cut(s) 597
KroI GCCGGC 1 cut(s) 656
KroNI GCCGGC 1 cut(s) 658
Kzo9I GATC 1 cut(s) 536
LguI GCTCTTC 1 cut(s) 173
LweI GCATC 1 cut(s) 178
MaeI CTAG 3 cut(s) 504, 623, 733
MaeII ACGT 2 cut(s) 53, 226
MalI GATC 1 cut(s) 538
MboI GATC 1 cut(s) 536
MboII GAAGA 3 cut(s) 190, 308, 372
MflI RGATCY 1 cut(s) 536
MhlI GDGCHC 3 cut(s) 76, 232, 243
MluCI AATT 4 cut(s) 90, 499, 550, 556
MlyI GAGTC 1 cut(s) 730
MmeI TCCRAC 1 cut(s) 663
MnlI CCTC 6 cut(s) 166, 231, 344, 641, 715, 718
MroNI GCCGGC 1 cut(s) 656
MroXI GAANNNNTTC 1 cut(s) 90
MseI TTAA 1 cut(s) 498
MslI CAYNNNNRTG 3 cut(s) 81, 211, 467
MspI CCGG 1 cut(s) 657
MspR9I CCNGG 1 cut(s) 210
Mva1269I GAATGC 1 cut(s) 361
MvaI CCWGG 1 cut(s) 210
MvnI CGCG 1 cut(s) 597
MwoI GCNNNNNNNGC 1 cut(s) 134
NaeI GCCGGC 1 cut(s) 658
NcoI CCATGG 1 cut(s) 98
NdeII GATC 1 cut(s) 536
NgoMIV GCCGGC 1 cut(s) 656
NlaIII CATG 3 cut(s) 80, 102, 311
NlaIV GGNNCC 3 cut(s) 74, 240, 241
PaeR7I CTCGAG 2 cut(s) 348, 540
PciSI GCTCTTC 1 cut(s) 173
PcsI WCGNNNNNNNCGW 1 cut(s) 716
PctI GAATGC 1 cut(s) 361
PdiI GCCGGC 1 cut(s) 658
PdmI GAANNNNTTC 1 cut(s) 90
PfeI GAWTC 3 cut(s) 104, 290, 509
PflMI CCANNNNNTGG 1 cut(s) 209
PleI GAGTC 1 cut(s) 729
PmaCI CACGTG 1 cut(s) 227
PmlI CACGTG 1 cut(s) 227
PpsI GAGTC 1 cut(s) 729
Ppu21I YACGTR 1 cut(s) 227
Psp6I CCWGG 1 cut(s) 208
PspCI CACGTG 1 cut(s) 227
PspFI CCCAGC 1 cut(s) 652
PspGI CCWGG 1 cut(s) 208
PspN4I GGNNCC 3 cut(s) 74, 240, 241
PspOMI GGGCCC 2 cut(s) 72, 239
PspPI GGNCC 5 cut(s) 72, 73, 239, 240, 611
PspXI VCTCGAGB 1 cut(s) 348
PsuI RGATCY 1 cut(s) 536
RsaI GTAC 3 cut(s) 7, 65, 201
RsaNI GTAC 3 cut(s) 6, 64, 200
RseI CAYNNNNRTG 3 cut(s) 81, 211, 467
SapI GCTCTTC 1 cut(s) 173
SaqAI TTAA 1 cut(s) 498
Sau3AI GATC 1 cut(s) 536
Sau96I GGNCC 5 cut(s) 72, 73, 239, 240, 611
SchI GAGTC 1 cut(s) 730
ScrFI CCNGG 1 cut(s) 210
SduI GDGCHC 3 cut(s) 76, 232, 243
SfaNI GCATC 1 cut(s) 178
SfcI CTRYAG 1 cut(s) 67
Sfr274I CTCGAG 2 cut(s) 348, 540
SinI GGWCC 1 cut(s) 611
SlaI CTCGAG 2 cut(s) 348, 540
SmiMI CAYNNNNRTG 3 cut(s) 81, 211, 467
SmlI CTYRAG 2 cut(s) 348, 540
SmoI CTYRAG 2 cut(s) 348, 540
Sse9I AATT 4 cut(s) 90, 499, 550, 556
SsiI CCGC 1 cut(s) 628
SspMI CTAG 3 cut(s) 504, 623, 733
StyD4I CCNGG 1 cut(s) 208
StyI CCWWGG 1 cut(s) 98
TaaI ACNGT 1 cut(s) 281
TaiI ACGT 2 cut(s) 56, 229
TaqI TCGA 5 cut(s) 349, 541, 579, 675, 710
TasI AATT 4 cut(s) 90, 499, 550, 556
TfiI GAWTC 3 cut(s) 104, 290, 509
Tru1I TTAA 1 cut(s) 498
Tru9I TTAA 1 cut(s) 498
TscAI CASTG 2 cut(s) 65, 152
TspDTI ATGAA 2 cut(s) 470, 510
TspGWI ACGGA 1 cut(s) 479
TspRI CASTG 2 cut(s) 65, 152
Van91I CCANNNNNTGG 1 cut(s) 209
VpaK11BI GGWCC 1 cut(s) 611
XapI RAATTY 2 cut(s) 90, 550
XbaI TCTAGA 1 cut(s) 503
XcmI CCANNNNNNNNNTGG 1 cut(s) 210
XhoI CTCGAG 2 cut(s) 348, 540
XmnI GAANNNNTTC 1 cut(s) 90
XspI CTAG 3 cut(s) 504, 623, 733
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.