Rmu_sc0009109.1_g000004

RNA processing

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009109.1
Physical Location & Seq
Forward (+)
25638 .. 27935
2298 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009109.1_g000004.1.cds

Sequence Viewer

Length: 1338 bp
atggagcccgacggcgcagcgccgatgcaggtcgagtccgcggcggacaaaagccctaactcggagctccctcccaaatccagagaagaaggcgagctctcttcggatgataatgacgaaaatcctgttctctcggttgcacgttccactggtactacagggcccatgctggttccaccagtgaacaaattcacccatgggaatcaagcggggaaggctgtatctcctgcaagctctgctgatattcagtgccaaacctccaagcaatctacttcccagaagagcaatgatgcgaacagagtaccgttaaaacctgctacacctggatggcgtcctccacgtgcccactcggggcccaacaataatcttgtgataagcttctcagatgatgacagtcagagtgattctgaagaaaaagagcgtgggaaactaaaagctttacaaactaaaagtaatatggctcgagggaatgctaatggaaaaccacccatttcttcacttgcaaaaccaaacaagttgggacagcctgccagaaatgtgaacaaagtaatgcccaaaaagttgtctatgaatcgcacatttatgacatcaatggcgaatatccgtggagttaattctagagattctgtgccttcatcagttgagcaaggatctcgagctggaaatttcaattccatgaacaaaaatatagtgaacagagagcgtggatatgaacttcaagacttgcgacagcagattgcacttaaggagactgaactgaagctcaaggaaagtgaactgaagcttaagtctgcccagcgaactaaggaatcagttacatgcaaggatgagaatgctaagggcctgcacagagatggacctggtaagtacagtacaggatattctgatggtatgcagacagaaccaaaagagccagataaaaagcgtataaaagtcagcggtgctttttcgactcggctaactacactaagcccacaagaattacctgttgcaaaacctttattaccgtcaaaaaccccagcaatggaggacaatactcaattgaacaccagtaagattgatcatctccaaaaagaaaatcaagtgcgtccaacagagtcgagcattgtaaaatggcaagatcctaatgataaacatgttgctggaatgttgggaaatatacatactggactgaaagaaggtgctggcatcaatgctaaatatatccagtccgatgggaggggtaagcagatggattctgttaaccaggctaaatcactggcaaatatgacgtgcattgattttccaaataacttggtaagtgaatatgtcaattactacagtattgcagtgtattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

445

Amino Acids

48.5

Weight (kDa)

9.29

Isoelectric Point (pI)

41.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 19, 322
AccII CGCG 1 cut(s) 41
AciI CCGC 5 cut(s) 39, 41, 44, 209, 939
AclWI GGATC 2 cut(s) 658, 1115
AcsI RAATTY 2 cut(s) 188, 664
AcuI CTGAAG 3 cut(s) 429, 779, 800
AcvI CACGTG 1 cut(s) 341
AcyI GRCGYC 1 cut(s) 331
AfaI GTAC 4 cut(s) 154, 303, 869, 874
AfiI CCNNNNNNNGG 4 cut(s) 61, 351, 1024, 1218
AflII CTTAAG 2 cut(s) 743, 785
AflIII ACRYGT 1 cut(s) 1135
AgsI TTSAA 3 cut(s) 670, 719, 1045
AjiI CACGTC 1 cut(s) 1272
AjnI CCWGG 3 cut(s) 322, 859, 1245
AluBI AGCT 8 cut(s) 67, 97, 234, 378, 437, 659, 763, 784
AluI AGCT 8 cut(s) 67, 97, 234, 378, 437, 659, 763, 784
Alw21I GWGCWC 2 cut(s) 69, 99
Alw26I GTCTC 1 cut(s) 743
AlwI GGATC 2 cut(s) 658, 1115
Ama87I CYCGRG 3 cut(s) 349, 462, 654
AoxI GGCC 3 cut(s) 161, 353, 841
ApaI GGGCCC 2 cut(s) 165, 357
ApeKI GCWGC 1 cut(s) 17
ApoI RAATTY 2 cut(s) 188, 664
Asp700I GAANNNNTTC 1 cut(s) 188
AspLEI GCGC 2 cut(s) 17, 22
AspS9I GGNCC 6 cut(s) 161, 162, 353, 354, 841, 857
AsuHPI GGTGA 1 cut(s) 184
AvaI CYCGRG 3 cut(s) 349, 462, 654
AvaII GGWCC 1 cut(s) 857
BaeGI GKGCMC 3 cut(s) 165, 346, 357
BanII GRGCYC 5 cut(s) 9, 69, 99, 165, 357
BbrPI CACGTG 1 cut(s) 341
Bbv12I GWGCWC 2 cut(s) 69, 99
BbvI GCAGC 1 cut(s) 29
BccI CCATC 5 cut(s) 321, 848, 881, 1208, 1225
BceAI ACGGC 1 cut(s) 28
BcgI CGANNNNNNTGC 2 cut(s) 635, 669
BciT130I CCWGG 3 cut(s) 324, 861, 1247
BclI TGATCA 1 cut(s) 1060
BcoDI GTCTC 1 cut(s) 743
BfaI CTAG 1 cut(s) 618
BfmI CTRYAG 2 cut(s) 156, 1318
BfoI RGCGCY 1 cut(s) 23
BfrI CTTAAG 2 cut(s) 743, 785
BfuAI ACCTGC 2 cut(s) 19, 322
BisI GCNGC 2 cut(s) 18, 42
BlsI GCNGC 2 cut(s) 19, 43
Bme1390I CCNGG 3 cut(s) 324, 861, 1247
Bme18I GGWCC 1 cut(s) 857
BmeT110I CYCGRG 3 cut(s) 349, 462, 654
BmgBI CACGTC 1 cut(s) 1272
BmgT120I GGNCC 6 cut(s) 161, 162, 353, 354, 841, 857
BmiI GGNNCC 5 cut(s) 6, 163, 174, 354, 355
BmrFI CCNGG 3 cut(s) 324, 861, 1247
BmsI GCATC 3 cut(s) 15, 280, 1197
Bpu10I CCTNAGC 1 cut(s) 837
BpuEI CTTGAG 1 cut(s) 749
BsaAI YACGTR 1 cut(s) 341
BsaHI GRCGYC 1 cut(s) 331
BsaJI CCNNGG 3 cut(s) 39, 196, 604
Bsc4I CCNNNNNNNGG 4 cut(s) 61, 351, 1024, 1218
Bse1I ACTGG 6 cut(s) 154, 179, 1050, 1171, 1207, 1263
Bse3DI GCAATG 2 cut(s) 292, 1029
BseBI CCWGG 3 cut(s) 324, 861, 1247
BseDI CCNNGG 3 cut(s) 39, 196, 604
BseGI GGATG 3 cut(s) 112, 332, 832
BseLI CCNNNNNNNGG 4 cut(s) 61, 351, 1024, 1218
BseMI GCAATG 2 cut(s) 292, 1029
BseMII CTCAG 1 cut(s) 396
BseNI ACTGG 6 cut(s) 154, 179, 1050, 1171, 1207, 1263
BseSI GKGCMC 3 cut(s) 165, 346, 357
BseXI GCAGC 1 cut(s) 29
BseYI CCCAGC 2 cut(s) 795, 1018
BsgI GTGCAG 1 cut(s) 830
Bsh1236I CGCG 1 cut(s) 41
BshFI GGCC 3 cut(s) 163, 355, 843
BsiHKAI GWGCWC 2 cut(s) 69, 99
BsiHKCI CYCGRG 3 cut(s) 349, 462, 654
BslFI GGGAC 1 cut(s) 534
BslI CCNNNNNNNGG 4 cut(s) 61, 351, 1024, 1218
BsmAI GTCTC 1 cut(s) 743
BsmFI GGGAC 1 cut(s) 534
BsmI GAATGC 2 cut(s) 475, 838
BsnI GGCC 3 cut(s) 163, 355, 843
BsoBI CYCGRG 3 cut(s) 349, 462, 654
Bsp120I GGGCCC 2 cut(s) 161, 353
Bsp1286I GDGCHC 6 cut(s) 9, 69, 99, 165, 346, 357
Bsp143I GATC 3 cut(s) 650, 1060, 1120
Bsp19I CCATGG 1 cut(s) 196
BspACI CCGC 5 cut(s) 39, 41, 44, 209, 939
BspANI GGCC 3 cut(s) 163, 355, 843
BspCNI CTCAG 1 cut(s) 395
BspFNI CGCG 1 cut(s) 41
BspLI GGNNCC 5 cut(s) 6, 163, 174, 354, 355
BspMI ACCTGC 2 cut(s) 19, 322
BspPI GGATC 2 cut(s) 658, 1115
BspQI GCTCTTC 1 cut(s) 275
BspTI CTTAAG 2 cut(s) 743, 785
BsrDI GCAATG 2 cut(s) 292, 1029
BsrI ACTGG 6 cut(s) 154, 179, 1050, 1171, 1207, 1263
BssECI CCNNGG 3 cut(s) 39, 196, 604
BssMI GATC 3 cut(s) 650, 1060, 1120
BssNI GRCGYC 1 cut(s) 331
BssT1I CCWWGG 1 cut(s) 196
Bst2UI CCWGG 3 cut(s) 324, 861, 1247
Bst4CI ACNGT 5 cut(s) 306, 395, 872, 1008, 1322
Bst6I CTCTTC 2 cut(s) 106, 275
BstACI GRCGYC 1 cut(s) 331
BstAFI CTTAAG 2 cut(s) 743, 785
BstAPI GCANNNNNTGC 1 cut(s) 236
BstBAI YACGTR 1 cut(s) 341
BstC8I GCNNGC 5 cut(s) 95, 232, 528, 845, 1186
BstDEI CTNAG 4 cut(s) 382, 804, 837, 968
BstDSI CCRYGG 3 cut(s) 39, 196, 604
BstF5I GGATG 3 cut(s) 112, 332, 832
BstFNI CGCG 1 cut(s) 41
BstH2I RGCGCY 1 cut(s) 23
BstHHI GCGC 2 cut(s) 17, 22
BstKTI GATC 3 cut(s) 653, 1063, 1123
BstMAI GTCTC 1 cut(s) 743
BstMBI GATC 3 cut(s) 650, 1060, 1120
BstMWI GCNNNNNNNGC 2 cut(s) 215, 236
BstNI CCWGG 3 cut(s) 324, 861, 1247
BstNSI RCATGY 2 cut(s) 822, 1139
BstSCI CCNGG 3 cut(s) 322, 859, 1245
BstSFI CTRYAG 2 cut(s) 156, 1318
BstSLI GKGCMC 3 cut(s) 165, 346, 357
BstUI CGCG 1 cut(s) 41
BstV1I GCAGC 1 cut(s) 29
BstX2I RGATCY 2 cut(s) 650, 1120
BstXI CCANNNNNNTGG 1 cut(s) 1214
BstYI RGATCY 2 cut(s) 650, 1120
BsuRI GGCC 3 cut(s) 163, 355, 843
BtgI CCRYGG 3 cut(s) 39, 196, 604
BtrI CACGTC 1 cut(s) 1272
BtsCI GGATG 3 cut(s) 112, 332, 832
BtsI GCAGTG 1 cut(s) 1335
BtsIMutI CAGTG 5 cut(s) 147, 186, 254, 1256, 1335
BveI ACCTGC 2 cut(s) 19, 322
Cac8I GCNNGC 5 cut(s) 95, 232, 528, 845, 1186
CfoI GCGC 2 cut(s) 17, 22
Cfr13I GGNCC 6 cut(s) 161, 162, 353, 354, 841, 857
Cfr42I CCGCGG 1 cut(s) 42
CseI GACGC 2 cut(s) 320, 1076
CsiI ACCWGGT 1 cut(s) 859
Csp6I GTAC 4 cut(s) 153, 302, 868, 873
CviAII CATG 5 cut(s) 166, 197, 676, 819, 1136
CviQI GTAC 4 cut(s) 153, 302, 868, 873
DdeI CTNAG 4 cut(s) 382, 804, 837, 968
DpnI GATC 3 cut(s) 652, 1062, 1122
DpnII GATC 3 cut(s) 650, 1060, 1120
Eam1104I CTCTTC 2 cut(s) 106, 275
EarI CTCTTC 2 cut(s) 106, 275
EciI GGCGGA 1 cut(s) 59
Ecl136II GAGCTC 2 cut(s) 67, 97
Eco130I CCWWGG 1 cut(s) 196
Eco24I GRGCYC 5 cut(s) 9, 69, 99, 165, 357
Eco47I GGWCC 1 cut(s) 857
Eco53kI GAGCTC 2 cut(s) 67, 97
Eco57I CTGAAG 3 cut(s) 429, 779, 800
Eco72I CACGTG 1 cut(s) 341
Eco88I CYCGRG 3 cut(s) 349, 462, 654
EcoICRI GAGCTC 2 cut(s) 67, 97
EcoO109I RGGNCCY 3 cut(s) 161, 353, 841
EcoRII CCWGG 3 cut(s) 322, 859, 1245
EcoT14I CCWWGG 1 cut(s) 196
EcoT38I GRGCYC 5 cut(s) 9, 69, 99, 165, 357
ErhI CCWWGG 1 cut(s) 196
FaeI CATG 5 cut(s) 169, 200, 679, 822, 1139
FaqI GGGAC 1 cut(s) 534
FatI CATG 5 cut(s) 165, 196, 675, 818, 1135
FauI CCCGC 1 cut(s) 202
FbaI TGATCA 1 cut(s) 1060
Fnu4HI GCNGC 2 cut(s) 18, 42
FokI GGATG 3 cut(s) 119, 339, 839
FriOI GRGCYC 5 cut(s) 9, 69, 99, 165, 357
Fsp4HI GCNGC 2 cut(s) 18, 42
FspBI CTAG 1 cut(s) 618
GlaI GCGC 2 cut(s) 16, 21
GluI GCNGC 2 cut(s) 18, 42
GsaI CCCAGC 2 cut(s) 799, 1022
HaeII RGCGCY 1 cut(s) 23
HaeIII GGCC 3 cut(s) 163, 355, 843
HgaI GACGC 2 cut(s) 320, 1076
HhaI GCGC 2 cut(s) 17, 22
Hin1I GRCGYC 1 cut(s) 331
Hin1II CATG 5 cut(s) 169, 200, 679, 822, 1139
Hin6I GCGC 2 cut(s) 15, 20
HinP1I GCGC 2 cut(s) 15, 20
HincII GTYRAC 1 cut(s) 1243
HindII GTYRAC 1 cut(s) 1243
HindIII AAGCTT 3 cut(s) 376, 435, 782
HinfI GANTC 9 cut(s) 35, 202, 404, 571, 623, 809, 952, 1097, 1235
HpaI GTTAAC 1 cut(s) 1243
HphI GGTGA 1 cut(s) 184
Hpy166II GTNNAC 5 cut(s) 184, 541, 694, 776, 1243
Hpy188I TCNGA 7 cut(s) 64, 106, 385, 399, 409, 886, 1213
Hpy188III TCNNGA 4 cut(s) 81, 618, 654, 719
Hpy8I GTNNAC 5 cut(s) 184, 541, 694, 776, 1243
Hpy99I CGWCG 1 cut(s) 14
HpyAV CCTTC 4 cut(s) 83, 208, 642, 1172
HpyCH4III ACNGT 5 cut(s) 306, 395, 872, 1008, 1322
HpyCH4IV ACGT 3 cut(s) 142, 340, 1271
HpyF10VI GCNNNNNNNGC 2 cut(s) 215, 236
HpyF3I CTNAG 4 cut(s) 382, 804, 837, 968
HpySE526I ACGT 3 cut(s) 142, 340, 1271
Hsp92I GRCGYC 1 cut(s) 331
Hsp92II CATG 5 cut(s) 169, 200, 679, 822, 1139
HspAI GCGC 2 cut(s) 15, 20
Ksp22I TGATCA 1 cut(s) 1060
KspAI GTTAAC 1 cut(s) 1243
KspI CCGCGG 1 cut(s) 42
Kzo9I GATC 3 cut(s) 650, 1060, 1120
LguI GCTCTTC 1 cut(s) 275
LmnI GCTCC 3 cut(s) 4, 64, 72
Lsp1109I GCAGC 1 cut(s) 29
LweI GCATC 3 cut(s) 15, 280, 1197
MabI ACCWGGT 1 cut(s) 859
MaeI CTAG 1 cut(s) 618
MaeII ACGT 3 cut(s) 142, 340, 1271
MaeIII GTNAC 1 cut(s) 814
MalI GATC 3 cut(s) 652, 1062, 1122
MboI GATC 3 cut(s) 650, 1060, 1120
MboII GAAGA 5 cut(s) 93, 98, 292, 422, 486
MfeI CAATTG 1 cut(s) 1040
MflI RGATCY 2 cut(s) 650, 1120
MhlI GDGCHC 6 cut(s) 9, 69, 99, 165, 346, 357
MluCI AATT 7 cut(s) 188, 613, 664, 670, 980, 1040, 1312
MlyI GAGTC 3 cut(s) 44, 946, 1106
MmeI TCCRAC 1 cut(s) 1115
MnlI CCTC 6 cut(s) 81, 268, 345, 458, 1021, 1212
MroXI GAANNNNTTC 1 cut(s) 188
MseI TTAA 5 cut(s) 308, 612, 744, 786, 1242
MslI CAYNNNNRTG 3 cut(s) 325, 581, 852
MspA1I CMGCKG 2 cut(s) 41, 939
MspCI CTTAAG 2 cut(s) 743, 785
MspR9I CCNGG 3 cut(s) 324, 861, 1247
MteI GCGCNGCGC 1 cut(s) 18
MunI CAATTG 1 cut(s) 1040
Mva1269I GAATGC 2 cut(s) 475, 838
MvaI CCWGG 3 cut(s) 324, 861, 1247
MvnI CGCG 1 cut(s) 41
MwoI GCNNNNNNNGC 2 cut(s) 215, 236
NcoI CCATGG 1 cut(s) 196
NdeII GATC 3 cut(s) 650, 1060, 1120
NlaIII CATG 5 cut(s) 169, 200, 679, 822, 1139
NlaIV GGNNCC 5 cut(s) 6, 163, 174, 354, 355
NmeAIII GCCGAG 1 cut(s) 934
NspI RCATGY 2 cut(s) 822, 1139
PaeR7I CTCGAG 2 cut(s) 462, 654
PciI ACATGT 1 cut(s) 1135
PciSI GCTCTTC 1 cut(s) 275
PctI GAATGC 2 cut(s) 475, 838
PdmI GAANNNNTTC 1 cut(s) 188
PfeI GAWTC 6 cut(s) 202, 404, 571, 623, 809, 1235
PkrI GCNGC 2 cut(s) 19, 43
PleI GAGTC 3 cut(s) 43, 946, 1105
PmaCI CACGTG 1 cut(s) 341
PmlI CACGTG 1 cut(s) 341
PpsI GAGTC 3 cut(s) 43, 946, 1105
Ppu21I YACGTR 1 cut(s) 341
PscI ACATGT 1 cut(s) 1135
Psp124BI GAGCTC 2 cut(s) 69, 99
Psp6I CCWGG 3 cut(s) 322, 859, 1245
PspCI CACGTG 1 cut(s) 341
PspFI CCCAGC 2 cut(s) 795, 1018
PspGI CCWGG 3 cut(s) 322, 859, 1245
PspN4I GGNNCC 5 cut(s) 6, 163, 174, 354, 355
PspOMI GGGCCC 2 cut(s) 161, 353
PspPI GGNCC 6 cut(s) 161, 162, 353, 354, 841, 857
PspXI VCTCGAGB 1 cut(s) 462
PsuI RGATCY 2 cut(s) 650, 1120
RsaI GTAC 4 cut(s) 154, 303, 869, 874
RsaNI GTAC 4 cut(s) 153, 302, 868, 873
RseI CAYNNNNRTG 3 cut(s) 325, 581, 852
SacI GAGCTC 2 cut(s) 69, 99
SacII CCGCGG 1 cut(s) 42
SapI GCTCTTC 1 cut(s) 275
SaqAI TTAA 5 cut(s) 308, 612, 744, 786, 1242
SatI GCNGC 2 cut(s) 18, 42
Sau3AI GATC 3 cut(s) 650, 1060, 1120
Sau96I GGNCC 6 cut(s) 161, 162, 353, 354, 841, 857
SchI GAGTC 3 cut(s) 44, 946, 1106
ScrFI CCNGG 3 cut(s) 324, 861, 1247
SduI GDGCHC 6 cut(s) 9, 69, 99, 165, 346, 357
SexAI ACCWGGT 1 cut(s) 859
SfaNI GCATC 3 cut(s) 15, 280, 1197
SfcI CTRYAG 2 cut(s) 156, 1318
Sfr274I CTCGAG 2 cut(s) 462, 654
Sfr303I CCGCGG 1 cut(s) 42
SgrBI CCGCGG 1 cut(s) 42
SinI GGWCC 1 cut(s) 857
SlaI CTCGAG 2 cut(s) 462, 654
SmiMI CAYNNNNRTG 3 cut(s) 325, 581, 852
SmlI CTYRAG 5 cut(s) 462, 654, 743, 764, 785
SmoI CTYRAG 5 cut(s) 462, 654, 743, 764, 785
Sse9I AATT 7 cut(s) 188, 613, 664, 670, 980, 1040, 1312
SsiI CCGC 5 cut(s) 39, 41, 44, 209, 939
SspMI CTAG 1 cut(s) 618
SstI GAGCTC 2 cut(s) 69, 99
StyD4I CCNGG 3 cut(s) 322, 859, 1245
StyI CCWWGG 1 cut(s) 196
TaaI ACNGT 5 cut(s) 306, 395, 872, 1008, 1322
TaiI ACGT 3 cut(s) 145, 343, 1274
TaqI TCGA 5 cut(s) 33, 463, 655, 950, 1100
TasI AATT 7 cut(s) 188, 613, 664, 670, 980, 1040, 1312
TatI WGTACW 2 cut(s) 867, 872
TauI GCSGC 1 cut(s) 44
TfiI GAWTC 6 cut(s) 202, 404, 571, 623, 809, 1235
Tru1I TTAA 5 cut(s) 308, 612, 744, 786, 1242
Tru9I TTAA 5 cut(s) 308, 612, 744, 786, 1242
TscAI CASTG 5 cut(s) 154, 186, 254, 1263, 1335
TseI GCWGC 1 cut(s) 17
TspDTI ATGAA 4 cut(s) 584, 624, 692, 726
TspGWI ACGGA 1 cut(s) 593
TspRI CASTG 5 cut(s) 154, 186, 254, 1263, 1335
Vha464I CTTAAG 2 cut(s) 743, 785
VpaK11BI GGWCC 1 cut(s) 857
XapI RAATTY 2 cut(s) 188, 664
XbaI TCTAGA 1 cut(s) 617
XceI RCATGY 2 cut(s) 822, 1139
XhoI CTCGAG 2 cut(s) 462, 654
XmnI GAANNNNTTC 1 cut(s) 188
XspI CTAG 1 cut(s) 618
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.