Rh6AG108000

RNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0015743
Physical Location & Seq
Reverse (-)
15758837 .. 15764771
5935 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG108000.1

Sequence Viewer

Length: 495 bp
ATGTGGTTTTATATACATAACATCACAAAAATATACACAGTTGCGGCAGTTTGGAGTCTAGGTGAGTTCATCAGTGTCACTTTCAATGAGCGCACCATTGCTAGTCTCGTTCGATGCAGCTACTTGATCCTGAAAGTCCTGTTTTCTCTGTTGCACATTCCACTGCTACCAGTTTACTTGCTCCAGGACCCATGCTGGTTCCAGGTACCAGTGAACAAATTCACCCAAGGGAATCAAGCGGGGAAGGCTGTATCTCCCGCAAGCTCTGCTGGTATTCAGTGCCAAATCTCCAAGCAACCTACTTCCCAGAAGAACAATGATGCGAACAGAGTACCATTAAAACGTGCTACACCTGGATGGCGTCCCCCATCTGCCCACTTGGGGCCCAACAATAATCTTGTGATAAGCTTCTCAAATGATGACAGTCAGAGCGATTCTGAAGAAAAAGAGCGTGGGAAACTAAAAGCTTTACAAACTATAAGCAACATGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3H1

Protein Analysis

164

Amino Acids

18.3

Weight (kDa)

9.41

Isoelectric Point (pI)

48.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 205
AccB1I GGYRCC 1 cut(s) 205
AciI CCGC 3 cut(s) 44, 239, 258
AclWI GGATC 1 cut(s) 121
AcsI RAATTY 1 cut(s) 218
AcuI CTGAAG 1 cut(s) 459
AcyI GRCGYC 1 cut(s) 361
AfaI GTAC 2 cut(s) 207, 333
AfiI CCNNNNNNNGG 1 cut(s) 381
AgsI TTSAA 1 cut(s) 85
AjnI CCWGG 3 cut(s) 183, 201, 352
AluBI AGCT 4 cut(s) 120, 264, 408, 467
AluI AGCT 4 cut(s) 120, 264, 408, 467
Alw26I GTCTC 1 cut(s) 110
AlwI GGATC 1 cut(s) 121
AoxI GGCC 1 cut(s) 383
ApaI GGGCCC 1 cut(s) 387
ApeKI GCWGC 1 cut(s) 117
ApoI RAATTY 1 cut(s) 218
Asp700I GAANNNNTTC 1 cut(s) 218
Asp718I GGTACC 1 cut(s) 205
AspLEI GCGC 1 cut(s) 93
AspS9I GGNCC 3 cut(s) 187, 383, 384
AsuHPI GGTGA 2 cut(s) 74, 214
AvaII GGWCC 1 cut(s) 187
BaeGI GKGCMC 1 cut(s) 387
BanI GGYRCC 1 cut(s) 205
BanII GRGCYC 1 cut(s) 387
BbvI GCAGC 1 cut(s) 129
BccI CCATC 2 cut(s) 351, 376
BciT130I CCWGG 3 cut(s) 185, 203, 354
BcoDI GTCTC 1 cut(s) 110
BfaI CTAG 2 cut(s) 59, 102
BisI GCNGC 2 cut(s) 45, 118
BlsI GCNGC 2 cut(s) 46, 119
Bme1390I CCNGG 3 cut(s) 185, 203, 354
Bme18I GGWCC 1 cut(s) 187
BmgT120I GGNCC 3 cut(s) 187, 383, 384
BmiI GGNNCC 5 cut(s) 189, 200, 207, 384, 385
BmrFI CCNGG 3 cut(s) 185, 203, 354
BmsI GCATC 2 cut(s) 104, 310
BpmI CTGGAG 1 cut(s) 167
BsaHI GRCGYC 1 cut(s) 361
BsaJI CCNNGG 1 cut(s) 226
BsaXI ACNNNNNCTCC 2 cut(s) 46, 76
Bsc4I CCNNNNNNNGG 1 cut(s) 381
Bse1I ACTGG 2 cut(s) 170, 209
Bse3DI GCAATG 1 cut(s) 96
BseBI CCWGG 3 cut(s) 185, 203, 354
BseDI CCNNGG 1 cut(s) 226
BseGI GGATG 1 cut(s) 362
BseLI CCNNNNNNNGG 1 cut(s) 381
BseMI GCAATG 1 cut(s) 96
BseNI ACTGG 2 cut(s) 170, 209
BseSI GKGCMC 1 cut(s) 387
BseXI GCAGC 1 cut(s) 129
BshFI GGCC 1 cut(s) 385
BshNI GGYRCC 1 cut(s) 205
BslFI GGGAC 1 cut(s) 348
BslI CCNNNNNNNGG 1 cut(s) 381
BsmAI GTCTC 1 cut(s) 110
BsmFI GGGAC 1 cut(s) 348
BsnI GGCC 1 cut(s) 385
Bsp120I GGGCCC 1 cut(s) 383
Bsp1286I GDGCHC 1 cut(s) 387
Bsp143I GATC 1 cut(s) 126
BspACI CCGC 3 cut(s) 44, 239, 258
BspANI GGCC 1 cut(s) 385
BspLI GGNNCC 5 cut(s) 189, 200, 207, 384, 385
BspPI GGATC 1 cut(s) 121
BspT107I GGYRCC 1 cut(s) 205
BsrDI GCAATG 1 cut(s) 96
BsrI ACTGG 2 cut(s) 170, 209
BssECI CCNNGG 1 cut(s) 226
BssMI GATC 1 cut(s) 126
BssNI GRCGYC 1 cut(s) 361
BssT1I CCWWGG 1 cut(s) 226
Bst2UI CCWGG 3 cut(s) 185, 203, 354
Bst4CI ACNGT 2 cut(s) 40, 425
BstACI GRCGYC 1 cut(s) 361
BstAPI GCANNNNNTGC 1 cut(s) 266
BstC8I GCNNGC 1 cut(s) 262
BstF5I GGATG 1 cut(s) 362
BstHHI GCGC 1 cut(s) 93
BstKTI GATC 1 cut(s) 129
BstMAI GTCTC 1 cut(s) 110
BstMBI GATC 1 cut(s) 126
BstMWI GCNNNNNNNGC 2 cut(s) 245, 266
BstNI CCWGG 3 cut(s) 185, 203, 354
BstSCI CCNGG 3 cut(s) 183, 201, 352
BstSLI GKGCMC 1 cut(s) 387
BstV1I GCAGC 1 cut(s) 129
BsuRI GGCC 1 cut(s) 385
BtsCI GGATG 1 cut(s) 362
BtsI GCAGTG 1 cut(s) 161
BtsIMutI CAGTG 4 cut(s) 79, 161, 216, 284
Cac8I GCNNGC 1 cut(s) 262
CfoI GCGC 1 cut(s) 93
Cfr13I GGNCC 3 cut(s) 187, 383, 384
CseI GACGC 1 cut(s) 350
Csp6I GTAC 2 cut(s) 206, 332
CviAII CATG 2 cut(s) 192, 487
CviJI RGCY 6 cut(s) 120, 248, 264, 385, 408, 467
CviKI_1 RGCY 6 cut(s) 120, 248, 264, 385, 408, 467
CviQI GTAC 2 cut(s) 206, 332
DpnI GATC 1 cut(s) 128
DpnII GATC 1 cut(s) 126
Eco130I CCWWGG 1 cut(s) 226
Eco24I GRGCYC 1 cut(s) 387
Eco47I GGWCC 1 cut(s) 187
Eco57I CTGAAG 1 cut(s) 459
EcoO109I RGGNCCY 2 cut(s) 187, 383
EcoRII CCWGG 3 cut(s) 183, 201, 352
EcoT14I CCWWGG 1 cut(s) 226
EcoT38I GRGCYC 1 cut(s) 387
ErhI CCWWGG 1 cut(s) 226
FaeI CATG 2 cut(s) 195, 490
FaiI YATR 7 cut(s) 12, 14, 18, 34, 193, 479, 488
FaqI GGGAC 1 cut(s) 348
FatI CATG 2 cut(s) 191, 486
FauI CCCGC 2 cut(s) 232, 265
Fnu4HI GCNGC 2 cut(s) 45, 118
FokI GGATG 1 cut(s) 369
FriOI GRGCYC 1 cut(s) 387
Fsp4HI GCNGC 2 cut(s) 45, 118
FspBI CTAG 2 cut(s) 59, 102
GlaI GCGC 1 cut(s) 92
GluI GCNGC 2 cut(s) 45, 118
GsuI CTGGAG 1 cut(s) 167
HaeIII GGCC 1 cut(s) 385
HgaI GACGC 1 cut(s) 350
HhaI GCGC 1 cut(s) 93
Hin1I GRCGYC 1 cut(s) 361
Hin1II CATG 2 cut(s) 195, 490
Hin6I GCGC 1 cut(s) 91
HinP1I GCGC 1 cut(s) 91
HindIII AAGCTT 2 cut(s) 406, 465
HinfI GANTC 3 cut(s) 55, 232, 434
HphI GGTGA 2 cut(s) 74, 214
Hpy166II GTNNAC 2 cut(s) 175, 214
Hpy188I TCNGA 2 cut(s) 429, 439
Hpy188III TCNNGA 1 cut(s) 130
Hpy8I GTNNAC 2 cut(s) 175, 214
HpyAV CCTTC 1 cut(s) 238
HpyCH4III ACNGT 2 cut(s) 40, 425
HpyCH4IV ACGT 1 cut(s) 343
HpyCH4V TGCA 2 cut(s) 117, 154
HpyF10VI GCNNNNNNNGC 2 cut(s) 245, 266
HpySE526I ACGT 1 cut(s) 343
Hsp92I GRCGYC 1 cut(s) 361
Hsp92II CATG 2 cut(s) 195, 490
HspAI GCGC 1 cut(s) 91
KpnI GGTACC 1 cut(s) 209
Kzo9I GATC 1 cut(s) 126
LmnI GCTCC 1 cut(s) 186
Lsp1109I GCAGC 1 cut(s) 129
LweI GCATC 2 cut(s) 104, 310
MaeI CTAG 2 cut(s) 59, 102
MaeII ACGT 1 cut(s) 343
MaeIII GTNAC 1 cut(s) 76
MalI GATC 1 cut(s) 128
MboI GATC 1 cut(s) 126
MboII GAAGA 2 cut(s) 322, 452
MhlI GDGCHC 1 cut(s) 387
MluCI AATT 1 cut(s) 218
MlyI GAGTC 1 cut(s) 64
MroXI GAANNNNTTC 1 cut(s) 218
MseI TTAA 1 cut(s) 338
MslI CAYNNNNRTG 1 cut(s) 355
MspR9I CCNGG 3 cut(s) 185, 203, 354
MvaI CCWGG 3 cut(s) 185, 203, 354
MwoI GCNNNNNNNGC 2 cut(s) 245, 266
NdeII GATC 1 cut(s) 126
NlaIII CATG 2 cut(s) 195, 490
NlaIV GGNNCC 5 cut(s) 189, 200, 207, 384, 385
NmuCI GTSAC 1 cut(s) 76
PdmI GAANNNNTTC 1 cut(s) 218
PfeI GAWTC 2 cut(s) 232, 434
PfoI TCCNGGA 1 cut(s) 183
PkrI GCNGC 2 cut(s) 46, 119
PleI GAGTC 1 cut(s) 63
PpsI GAGTC 1 cut(s) 63
PpuMI RGGWCCY 1 cut(s) 187
Psp5II RGGWCCY 1 cut(s) 187
Psp6I CCWGG 3 cut(s) 183, 201, 352
PspGI CCWGG 3 cut(s) 183, 201, 352
PspN4I GGNNCC 5 cut(s) 189, 200, 207, 384, 385
PspOMI GGGCCC 1 cut(s) 383
PspPI GGNCC 3 cut(s) 187, 383, 384
PspPPI RGGWCCY 1 cut(s) 187
RsaI GTAC 2 cut(s) 207, 333
RsaNI GTAC 2 cut(s) 206, 332
RseI CAYNNNNRTG 1 cut(s) 355
SaqAI TTAA 1 cut(s) 338
SatI GCNGC 2 cut(s) 45, 118
Sau3AI GATC 1 cut(s) 126
Sau96I GGNCC 3 cut(s) 187, 383, 384
SchI GAGTC 1 cut(s) 64
ScrFI CCNGG 3 cut(s) 185, 203, 354
SduI GDGCHC 1 cut(s) 387
SetI ASST 9 cut(s) 64, 122, 207, 266, 301, 346, 355, 410, 469
SfaNI GCATC 2 cut(s) 104, 310
SinI GGWCC 1 cut(s) 187
SmiMI CAYNNNNRTG 1 cut(s) 355
Sse9I AATT 1 cut(s) 218
SsiI CCGC 3 cut(s) 44, 239, 258
SspMI CTAG 2 cut(s) 59, 102
StyD4I CCNGG 3 cut(s) 183, 201, 352
StyI CCWWGG 1 cut(s) 226
TaaI ACNGT 2 cut(s) 40, 425
TaiI ACGT 1 cut(s) 346
TaqI TCGA 1 cut(s) 112
TasI AATT 1 cut(s) 218
TauI GCSGC 1 cut(s) 47
TfiI GAWTC 2 cut(s) 232, 434
Tru1I TTAA 1 cut(s) 338
Tru9I TTAA 1 cut(s) 338
TscAI CASTG 4 cut(s) 79, 168, 216, 284
TseFI GTSAC 1 cut(s) 76
TseI GCWGC 1 cut(s) 117
Tsp45I GTSAC 1 cut(s) 76
TspDTI ATGAA 1 cut(s) 58
TspRI CASTG 4 cut(s) 79, 168, 216, 284
VpaK11BI GGWCC 1 cut(s) 187
XapI RAATTY 1 cut(s) 218
XmnI GAANNNNTTC 1 cut(s) 218
XspI CTAG 2 cut(s) 59, 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.