Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008431

Physical Location & Seq

Genomic Coordinates Reverse (-)

39752319 .. 39758283

Gene Structure 5965 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38548

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3024 bp

ATGGGGAAGAAGGTTAAGAAGAAGACTAGAGCTCCTCAAAAGGAGAAGTGGGTTCCATCTGATTCCCCAAAGAAGGTTGCTGAACAAAGCAACCCAAGCGTTAAGGATGATGGTGATGATGGAGTTTCAGTTGCAAAAGTGAGAAAAGCTTGTCCTCACATTGACAAAGGTGTTGATTTGAATAAATTGCAAGCTAAAATTGGGTCTTCAGCAGTTATTAGGTGTGAAGATTGTAGGGAAGGCGCCATTGATAGGAAGGGGGGTAAAGGAAAGGGCAAACATGGTAAGAAGAAAGGAGGTGCTGATTCTAAATCCGAGTCAAAATCTGTATGGCTTTGTTTAGAATGCGGTCATTTTGCTTGTGGTGGGATTGGACTTCCAATAACCCCTCAGTGCCACGCAGTTCGGCATGCAAGGCAAACGCGTCACCCATTGGTGGTGCAGTTTGAAAACCCACAGTTACGATGGTGCTTCCAGTGCAGCACACTTATTACCATTGATAAGACGGGGGAGAATGGTGAAGAAAAAGATGTCTTTTCTGATGTTGTGAAATTAATTAAGGGTCATTCGTCGGAGGACCCATCAGGTGATGTCGAGGATGTATGGTTTGGTAGTGGCAGTGTGACAAGCGAAATCAAATCAGCTAGCAATACATCAAGCCTTTTGGATGGAAGAGGAGGTTATGCAGTAAGAGGATTAGTTAATCTTGGTAACACTTGCTTCTTCAATTCTATTTTACAGAACCTTCTAGCTATTGATAGGTTGCGGGTTTACTTCTTAAATTTTGAAGCACCTGCCGGACCGCTTACTATTTCCTTGAAGAAACTCTTTACTGAAACAAAACCAGAGGCAGGATTCAAGAATGTGATAAACCCTAGATCGTTTTTCGGTTGTGTCTGTTCCAAGGCTCCCCAGTTTAGGGGCTATCAGCAGCAAGACAGTCATGAATTGCTTCGTTGCTTACTGGATGGATTGTGTACTGAGGAGTTGAGTATGAGGAAACGTACAAGTTCTTCCCAGCAAAATGAGGATTCATCAAATCCAGTTCCTACGTTTGTTGATGCTGTATTTGGGGGACAGGTATCAAGTACTGTTCGCTGTGTTGAATGTGGTCACTCATCAACTATCTATGAGTCATTCTTAGATCTGTCACTGCCAGTCCCAACCAGGAAATCCCCACCTAAGGCTTCCCTACCAAGCTCTCGAGCAAAGAAGACAAAGCTTCCACCCAAGAGGAGTGGAAAGGTTCGATCTAAAATTAACAAAGACAAGAACTCTGCAACATCTCCAAGTGTGGCAACCACATCAACCAGCGGTGAGCTCTCTAACCAGGTACAGTCAAGTTCTACTGAGCTAAATGTACCTGAACAAAACGGCTTGGTTATGAAGAATCTATCAGCTGTCCAAGAATCTCAACATGAACAAGTCTTTGAGAATGCAGCAGGAGAACAAGCATCAGCTTTGTTAGATGACTTTACATGGATGGATTATCTTGATGACGGAAATATATTAGATGACTATGATTTGACTTCAGAAAATGCTATTGTTTCAATTGTTCAAGATCCTAAAAGTATTAATACATCTCTTAATGATGTCTCACAACAGAGTGGCTCTGAGATCAGTGATAAGGATTTCAAGGTTACTGGAGAACAGAATGTAAAACCAAACTTTTCTTCAGTGAATGCTGAGGAGGACGAGCTCCCATTGCAGGTTCAAAGTTCTGAAATTTTATTGCTTCCATATAAAGAAGATCAGAGTTCTGAAATGTTGTTGCTTCCACATAAGGAAGGATGTTCCATCACTGGGGAAATCATGGGAGGAGAAGGAGAGGCATCGTCATCAACCGTGGGTTGTGGACAAGATGATTTTGATGGCTTTGGAGACTTATTCAATGAGCCTGAGCCTGAGCCTGAGGTTGTTGCTGGGCCCAGTCCAAGGCCCTCTACTGGTGAGGAAGGTACAGCAACTAGTCTTATAGCTAGTGAGTCTGATCCAGATGAAGTTGATGATACAAATTCTCCGGTCTCTGTAGAGAGTTGTTTGGCTCATTTCATAAAGCCTGAGCTTCTTGCCAATGAAAATGCTTGGCATTGTGAGAACTGTTCCAAATCTCTGAAGCGCCAAAGGTTGGAAGCAAAGAAGCAGCAAAAAGCTGCAACTAAATGTTTGATAAATGGATGTGAGACTAGAGTCCAAAGTGTTTCTCTGAGTTCAGACACTGCTGATATCAGTAATATTAGTAATGGAAATATCAAAAGCAATACTGGTTGCAGCCAATTTGGTGAAAACTTGGTTTTGGATGATGGGAAGATGAATTGCTCGAGCGAAAATTGCACATCAATTGAGAATGCCCTATCAGATAAGATGATTCCTGTTGTTTGTCAACAACTAGAAGGAAACAGTGAGATGAAAGATGTACTTCCAACAGAATCAAATACTTTGGATTGCAATAACAGTGATACTCTAGAAAGTATTAGCAGTCAAGCCATTGATACATGTGCTGATGTGCCTAGTTGCGCTGGATGTGCCTCTGAAAATGCTCCACAGACAAATTCTACGTTGTTAGATGATTGTGAATTAGAAGCAAGTGAAGATGAGGAAATAAATTCCAAACATGTGAAGGTGAAGAGGGATGCGACAAAACGGGTCCTAATTGACAGGGCCCCGCCTATTTTGACCATTCATCTCAAAAGGTTTAGCCAGGATGCTCGTGGTCGCTTAAGTAAATTGAACGGCCATGTCACTTTCAGAGAAAAAATTGAGCTCAGACCATATATGGATTCCAGGTGCAGAGAAAAGGAGAGGTATGAATACCACCTAATCGGGGTTGTGGAGCATTCTGGGACCATGCGAGGAGGCCATTATGTTGCATATGTGAGAGGTGGTGAAAGGAGCAGAGGAAAAGCTGAGAAGGAGAAGATTGGTCACGTGTGGTATTATGCTAGTGATGTACATGTACGTGAGGTTTCCCTAGATGAGGTGCTTCGCTGTGAGGCCTATATCTTATTCTATGAAAAAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009507 GO:0009536 GO:0009987 GO:0019538 GO:0019941 GO:0030163 GO:0032991 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UCH zf-UBP

Protein Analysis

1007

Amino Acids

110.01

Weight (kDa)

5.39

Isoelectric Point (pI)

48.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-UBP	PF02148	106 - 165	4.4e-13	Zn-finger in ubiquitin-hydrolases and other protein
UCH	PF00443	231 - 406	2.4e-25	Ubiquitin carboxyl-terminal hydrolase
UCH	PF00443	704 - 1004	3.8e-31	Ubiquitin carboxyl-terminal hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008431)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04860
fragaria_vesca	FvH4_4g16490 FvH4_4g16490
malus_domestica	MD04G1009400.v1.1 MD13G1284700.v1.1
prunus_persica	Prupe.1G008700_v2.0.a1 Prupe.1G008700_v2.0.a1 Prupe.1G008700_v2.0.a1 Prupe.1G008700_v2.0.a1
pyrus_communis	pycom04g00720 pycom420g01370
rosa_chinensis	RchiOBHm_Chr4g0415171
rosa_laevigata	RLG00000008090
rosa_multiflora	Rmu_sc0003748.1_g000031 Rmu_sc0033472.1_g000001
rosa_roxburghii	Rroxscaffold_5G00359000
rosa_rugosa	Rorug04G0132500 Rorug04G0132500
rosa_samantha	Rh4AG192800 Rh4BG190900 Rh4CG203600 Rh4DG190700
rosa_wichuraiana	Rw4G016390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	802
Acc36I	ACCTGC	2 cut(s)	802, 1699
AccB1I	GGYRCC	1 cut(s)	242
AccB7I	CCANNNNNTGG	1 cut(s)	2128
AccII	CGCG	1 cut(s)	424
AciI	CCGC	5 cut(s)	348, 766, 803, 1314, 2666
AclWI	GGATC	2 cut(s)	1556, 1985
AcoI	YGGCCR	1 cut(s)	2734
AcsI	RAATTY	5 cut(s)	781, 1725, 2014, 2551, 2605
AcuI	CTGAAG	4 cut(s)	192, 1515, 1659, 2135
AcvI	CACGTG	1 cut(s)	2929
AcyI	GRCGYC	1 cut(s)	243
AfaI	GTAC	9 cut(s)	979, 1006, 1090, 1335, 1362, 1960, 2418, 2952, 2958
AflII	CTTAAG	1 cut(s)	2719
AflIII	ACRYGT	5 cut(s)	422, 2495, 2614, 2928, 2953
AhlI	ACTAGT	1 cut(s)	1967
AjnI	CCWGG	4 cut(s)	1166, 1329, 2700, 2783
AjuI	GAANNNNNNNTTGG	2 cut(s)	1657, 1689
Alw21I	GWGCWC	4 cut(s)	34, 1323, 1701, 2766
Alw26I	GTCTC	4 cut(s)	1600, 1875, 2029, 2177
AlwI	GGATC	2 cut(s)	1556, 1985
AlwNI	CAGNNNCTG	1 cut(s)	2219
Ama87I	CYCGRG	2 cut(s)	1203, 2320
AoxI	GGCC	6 cut(s)	1925, 1937, 2661, 2734, 2857, 2994
ApaI	GGGCCC	2 cut(s)	1929, 2665
ApeKI	GCWGC	6 cut(s)	480, 931, 1439, 2143, 2153, 2271
ApoI	RAATTY	5 cut(s)	781, 1725, 2014, 2551, 2605
AseI	ATTAAT	2 cut(s)	554, 1575
Asp700I	GAANNNNTTC	1 cut(s)	951
AspLEI	GCGC	3 cut(s)	245, 2121, 2519
AspS9I	GGNCC	9 cut(s)	577, 800, 1925, 1926, 1938, 2647, 2661, 2662, 2844
AsuHPI	GGTGA	9 cut(s)	125, 419, 530, 599, 1328, 1961, 2294, 2635, 2897
AsuNHI	GCTAGC	1 cut(s)	644
AvaI	CYCGRG	2 cut(s)	1203, 2320
AvaII	GGWCC	4 cut(s)	577, 800, 2647, 2844
AxyI	CCTNAGG	2 cut(s)	1182, 1911
BaeGI	GKGCMC	2 cut(s)	1929, 2665
BanI	GGYRCC	1 cut(s)	242
BanII	GRGCYC	6 cut(s)	34, 1323, 1701, 1929, 2665, 2766
BarI	GAAGNNNNNNTAC	2 cut(s)	997, 1029
BauI	CACGAG	1 cut(s)	2709
BbrPI	CACGTG	1 cut(s)	2929
BbsI	GAAGAC	3 cut(s)	29, 198, 1220
Bbv12I	GWGCWC	4 cut(s)	34, 1323, 1701, 2766
BbvCI	CCTCAGC	1 cut(s)	1686
BbvI	GCAGC	6 cut(s)	492, 943, 1451, 2140, 2155, 2283
BceAI	ACGGC	2 cut(s)	1390, 2749
BciT130I	CCWGG	4 cut(s)	1168, 1331, 2702, 2785
BcoDI	GTCTC	4 cut(s)	1600, 1875, 2029, 2177
BcuI	ACTAGT	1 cut(s)	1967
BfmI	CTRYAG	1 cut(s)	2028
BfoI	RGCGCY	2 cut(s)	246, 2122
BfrI	CTTAAG	1 cut(s)	2719
BfuAI	ACCTGC	2 cut(s)	802, 1699
BglII	AGATCT	1 cut(s)	1144
BisI	GCNGC	6 cut(s)	481, 932, 1440, 2144, 2154, 2272
BlsI	GCNGC	6 cut(s)	482, 933, 1441, 2145, 2155, 2273
BmcAI	AGTACT	1 cut(s)	1090
Bme1390I	CCNGG	4 cut(s)	1168, 1331, 2702, 2785
Bme18I	GGWCC	4 cut(s)	577, 800, 2647, 2844
BmeT110I	CYCGRG	2 cut(s)	1203, 2320
BmgT120I	GGNCC	9 cut(s)	577, 800, 1925, 1926, 1938, 2647, 2661, 2662, 2844
BmiI	GGNNCC	9 cut(s)	54, 244, 579, 909, 1927, 2648, 2663, 2664, 2845
BmrFI	CCNGG	4 cut(s)	1168, 1331, 2702, 2785
BmrI	ACTGGG	3 cut(s)	907, 1812, 1923
BmsI	GCATC	5 cut(s)	1051, 1463, 1841, 2623, 2695
BmtI	GCTAGC	1 cut(s)	648
BmuI	ACTGGG	3 cut(s)	907, 1812, 1923
BoxI	GACNNNNGTC	1 cut(s)	2189
BpiI	GAAGAC	3 cut(s)	29, 198, 1220
BpmI	CTGGAG	1 cut(s)	1665
Bpu10I	CCTNAGC	4 cut(s)	1686, 1899, 1905, 2061
BsaAI	YACGTR	2 cut(s)	2929, 2960
BsaHI	GRCGYC	1 cut(s)	243
BsaI	GGTCTC	1 cut(s)	2029
BsaJI	CCNNGG	3 cut(s)	903, 1845, 1934
BsaWI	WCCGGW	1 cut(s)	2020
BsaXI	ACNNNNNCTCC	6 cut(s)	16, 46, 114, 144, 2002, 2032
Bse21I	CCTNAGG	2 cut(s)	1182, 1911
Bse3DI	GCAATG	1 cut(s)	1703
BseBI	CCWGG	4 cut(s)	1168, 1331, 2702, 2785
BseDI	CCNNGG	3 cut(s)	903, 1845, 1934
BseMI	GCAATG	1 cut(s)	1703
BseRI	GAGGAG	7 cut(s)	24, 690, 998, 1249, 1703, 1833, 2868
BseSI	GKGCMC	2 cut(s)	1929, 2665
BseXI	GCAGC	6 cut(s)	492, 943, 1451, 2140, 2155, 2283
BseYI	CCCAGC	2 cut(s)	1017, 1922
BsgI	GTGCAG	3 cut(s)	461, 499, 2809
Bsh1236I	CGCG	1 cut(s)	424
BshFI	GGCC	6 cut(s)	1927, 1939, 2663, 2736, 2859, 2996
BshNI	GGYRCC	1 cut(s)	242
BsiHKAI	GWGCWC	4 cut(s)	34, 1323, 1701, 2766
BsiHKCI	CYCGRG	2 cut(s)	1203, 2320
BsiSI	CCGG	2 cut(s)	798, 2021
BslFI	GGGAC	3 cut(s)	1089, 1145, 2857
BsmAI	GTCTC	4 cut(s)	1600, 1875, 2029, 2177
BsmFI	GGGAC	3 cut(s)	1089, 1145, 2857
BsmI	GAATGC	5 cut(s)	350, 1441, 1687, 2353, 2836
BsnI	GGCC	6 cut(s)	1927, 1939, 2663, 2736, 2859, 2996
Bso31I	GGTCTC	1 cut(s)	2029
BsoBI	CYCGRG	2 cut(s)	1203, 2320
Bsp120I	GGGCCC	2 cut(s)	1925, 2661
Bsp1286I	GDGCHC	6 cut(s)	34, 1323, 1701, 1929, 2665, 2766
Bsp1407I	TGTACA	1 cut(s)	2950
Bsp143I	GATC	7 cut(s)	878, 1144, 1250, 1561, 1617, 1750, 1990
BspACI	CCGC	5 cut(s)	348, 766, 803, 1314, 2666
BspANI	GGCC	6 cut(s)	1927, 1939, 2663, 2736, 2859, 2996
BspFNI	CGCG	1 cut(s)	424
BspHI	TCATGA	1 cut(s)	943
BspLI	GGNNCC	9 cut(s)	54, 244, 579, 909, 1927, 2648, 2663, 2664, 2845
BspMI	ACCTGC	2 cut(s)	802, 1699
BspOI	GCTAGC	1 cut(s)	648
BspPI	GGATC	2 cut(s)	1556, 1985
BspT107I	GGYRCC	1 cut(s)	242
BspTI	CTTAAG	1 cut(s)	2719
BspTNI	GGTCTC	1 cut(s)	2029
BsrDI	GCAATG	1 cut(s)	1703
BsrGI	TGTACA	1 cut(s)	2950
BssECI	CCNNGG	3 cut(s)	903, 1845, 1934
BssMI	GATC	7 cut(s)	878, 1144, 1250, 1561, 1617, 1750, 1990
BssNI	GRCGYC	1 cut(s)	243
BssSI	CACGAG	1 cut(s)	2709
BssT1I	CCWWGG	2 cut(s)	903, 1934
Bst2BI	CACGAG	1 cut(s)	2709
Bst2UI	CCWGG	4 cut(s)	1168, 1331, 2702, 2785
Bst4CI	ACNGT	8 cut(s)	459, 941, 1093, 1338, 1846, 2102, 2402, 2456
Bst6I	CTCTTC	2 cut(s)	667, 2621
BstACI	GRCGYC	1 cut(s)	243
BstAFI	CTTAAG	1 cut(s)	2719
BstAUI	TGTACA	1 cut(s)	2950
BstBAI	YACGTR	2 cut(s)	2929, 2960
BstC8I	GCNNGC	3 cut(s)	192, 411, 646
BstDSI	CCRYGG	1 cut(s)	1845
BstENI	CCTNNNNNAGG	1 cut(s)	2975
BstFNI	CGCG	1 cut(s)	424
BstH2I	RGCGCY	2 cut(s)	246, 2122
BstHHI	GCGC	3 cut(s)	245, 2121, 2519
BstKTI	GATC	7 cut(s)	881, 1147, 1253, 1564, 1620, 1753, 1993
BstMAI	GTCTC	4 cut(s)	1600, 1875, 2029, 2177
BstMBI	GATC	7 cut(s)	878, 1144, 1250, 1561, 1617, 1750, 1990
BstMWI	GCNNNNNNNGC	6 cut(s)	96, 415, 477, 1705, 2331, 2525
BstNI	CCWGG	4 cut(s)	1168, 1331, 2702, 2785
BstNSI	RCATGY	4 cut(s)	413, 2499, 2618, 2957
BstPAI	GACNNNNGTC	1 cut(s)	2189
BstSCI	CCNGG	4 cut(s)	1166, 1329, 2700, 2783
BstSFI	CTRYAG	1 cut(s)	2028
BstSLI	GKGCMC	2 cut(s)	1929, 2665
BstUI	CGCG	1 cut(s)	424
BstV1I	GCAGC	6 cut(s)	492, 943, 1451, 2140, 2155, 2283
BstV2I	GAAGAC	3 cut(s)	29, 198, 1220
BstX2I	RGATCY	2 cut(s)	1144, 1561
BstYI	RGATCY	2 cut(s)	1144, 1561
Bsu36I	CCTNAGG	2 cut(s)	1182, 1911
BsuRI	GGCC	6 cut(s)	1927, 1939, 2663, 2736, 2859, 2996
BtgI	CCRYGG	1 cut(s)	1845
BtsI	GCAGTG	3 cut(s)	625, 1151, 2217
BveI	ACCTGC	2 cut(s)	802, 1699
Cac8I	GCNNGC	3 cut(s)	192, 411, 646
CaiI	CAGNNNCTG	1 cut(s)	2219
CciI	TCATGA	1 cut(s)	943
CfoI	GCGC	3 cut(s)	245, 2121, 2519
Cfr13I	GGNCC	9 cut(s)	577, 800, 1925, 1926, 1938, 2647, 2661, 2662, 2844
CpoI	CGGWCCG	1 cut(s)	800
CseI	GACGC	1 cut(s)	413
CsiI	ACCWGGT	1 cut(s)	1329
Csp6I	GTAC	9 cut(s)	978, 1005, 1089, 1334, 1361, 1959, 2417, 2951, 2957
CspCI	CAANNNNNGTGG	2 cut(s)	1219, 1254
CspI	CGGWCCG	1 cut(s)	800
CviQI	GTAC	9 cut(s)	978, 1005, 1089, 1334, 1361, 1959, 2417, 2951, 2957
DinI	GGCGCC	1 cut(s)	244
DpnI	GATC	7 cut(s)	880, 1146, 1252, 1563, 1619, 1752, 1992
DpnII	GATC	7 cut(s)	878, 1144, 1250, 1561, 1617, 1750, 1990
EaeI	YGGCCR	1 cut(s)	2734
Eam1104I	CTCTTC	2 cut(s)	667, 2621
EarI	CTCTTC	2 cut(s)	667, 2621
Ecl136II	GAGCTC	4 cut(s)	32, 1321, 1699, 2764
Eco130I	CCWWGG	2 cut(s)	903, 1934
Eco147I	AGGCCT	1 cut(s)	2996
Eco24I	GRGCYC	6 cut(s)	34, 1323, 1701, 1929, 2665, 2766
Eco31I	GGTCTC	1 cut(s)	2029
Eco32I	GATATC	1 cut(s)	2227
Eco47I	GGWCC	4 cut(s)	577, 800, 2647, 2844
Eco53kI	GAGCTC	4 cut(s)	32, 1321, 1699, 2764
Eco57I	CTGAAG	4 cut(s)	192, 1515, 1659, 2135
Eco72I	CACGTG	1 cut(s)	2929
Eco81I	CCTNAGG	2 cut(s)	1182, 1911
Eco88I	CYCGRG	2 cut(s)	1203, 2320
EcoICRI	GAGCTC	4 cut(s)	32, 1321, 1699, 2764
EcoNI	CCTNNNNNAGG	1 cut(s)	2975
EcoO109I	RGGNCCY	5 cut(s)	577, 1938, 2647, 2661, 2662
EcoRII	CCWGG	4 cut(s)	1166, 1329, 2700, 2783
EcoRV	GATATC	1 cut(s)	2227
EcoT14I	CCWWGG	2 cut(s)	903, 1934
EcoT38I	GRGCYC	6 cut(s)	34, 1323, 1701, 1929, 2665, 2766
EgeI	GGCGCC	1 cut(s)	244
EheI	GGCGCC	1 cut(s)	244
ErhI	CCWWGG	2 cut(s)	903, 1934
FalI	AAGNNNNNCTT	4 cut(s)	812, 844, 2403, 2435
FaqI	GGGAC	3 cut(s)	1089, 1145, 2857
FauI	CCCGC	2 cut(s)	759, 2673
FauNDI	CATATG	1 cut(s)	2872
Fnu4HI	GCNGC	6 cut(s)	481, 932, 1440, 2144, 2154, 2272
FriOI	GRGCYC	6 cut(s)	34, 1323, 1701, 1929, 2665, 2766
Fsp4HI	GCNGC	6 cut(s)	481, 932, 1440, 2144, 2154, 2272
GlaI	GCGC	3 cut(s)	244, 2120, 2518
GluI	GCNGC	6 cut(s)	481, 932, 1440, 2144, 2154, 2272
GsaI	CCCAGC	2 cut(s)	1021, 1926
GsuI	CTGGAG	1 cut(s)	1665
HaeII	RGCGCY	2 cut(s)	246, 2122
HaeIII	GGCC	6 cut(s)	1927, 1939, 2663, 2736, 2859, 2996
HapII	CCGG	2 cut(s)	798, 2021
HgaI	GACGC	1 cut(s)	413
HhaI	GCGC	3 cut(s)	245, 2121, 2519
Hin1I	GRCGYC	1 cut(s)	243
Hin6I	GCGC	3 cut(s)	243, 2119, 2517
HinP1I	GCGC	3 cut(s)	243, 2119, 2517
HincII	GTYRAC	1 cut(s)	2384
HindII	GTYRAC	1 cut(s)	2384
HindIII	AAGCTT	2 cut(s)	147, 1220
HpaII	CCGG	2 cut(s)	798, 2021
HphI	GGTGA	9 cut(s)	125, 419, 530, 599, 1328, 1961, 2294, 2635, 2897
Hpy166II	GTNNAC	4 cut(s)	772, 978, 1856, 2384
Hpy188III	TCNNGA	7 cut(s)	859, 944, 1203, 1493, 1559, 1994, 2465
Hpy8I	GTNNAC	4 cut(s)	772, 978, 1856, 2384
Hpy99I	CGWCG	1 cut(s)	574
HpyCH4III	ACNGT	8 cut(s)	459, 941, 1093, 1338, 1846, 2102, 2402, 2456
HpyCH4IV	ACGT	5 cut(s)	1003, 1052, 2558, 2928, 2959
HpyF10VI	GCNNNNNNNGC	6 cut(s)	96, 415, 477, 1705, 2331, 2525
HpySE526I	ACGT	5 cut(s)	1003, 1052, 2558, 2928, 2959
Hsp92I	GRCGYC	1 cut(s)	243
HspAI	GCGC	3 cut(s)	243, 2119, 2517
KasI	GGCGCC	1 cut(s)	242
Kzo9I	GATC	7 cut(s)	878, 1144, 1250, 1561, 1617, 1750, 1990
LmnI	GCTCC	6 cut(s)	37, 913, 1704, 2545, 2833, 2892
Lsp1109I	GCAGC	6 cut(s)	492, 943, 1451, 2140, 2155, 2283
LweI	GCATC	5 cut(s)	1051, 1463, 1841, 2623, 2695
MabI	ACCWGGT	1 cut(s)	1329
MaeII	ACGT	5 cut(s)	1003, 1052, 2558, 2928, 2959
MaeIII	GTNAC	9 cut(s)	425, 459, 622, 710, 1112, 1149, 1639, 2740, 2924
MalI	GATC	7 cut(s)	880, 1146, 1252, 1563, 1619, 1752, 1992
MboI	GATC	7 cut(s)	878, 1144, 1250, 1561, 1617, 1750, 1990
MfeI	CAATTG	2 cut(s)	1551, 2340
MflI	RGATCY	2 cut(s)	1144, 1561
MhlI	GDGCHC	6 cut(s)	34, 1323, 1701, 1929, 2665, 2766
MluI	ACGCGT	1 cut(s)	422
Mly113I	GGCGCC	1 cut(s)	243
MlyI	GAGTC	4 cut(s)	326, 1142, 1994, 2199
MmeI	TCCRAC	3 cut(s)	552, 2109, 2447
MroXI	GAANNNNTTC	1 cut(s)	951
MslI	CAYNNNNRTG	1 cut(s)	2958
MspA1I	CMGCKG	2 cut(s)	1314, 1400
MspCI	CTTAAG	1 cut(s)	2719
MspI	CCGG	2 cut(s)	798, 2021
MspR9I	CCNGG	4 cut(s)	1168, 1331, 2702, 2785
MunI	CAATTG	2 cut(s)	1551, 2340
Mva1269I	GAATGC	5 cut(s)	350, 1441, 1687, 2353, 2836
MvaI	CCWGG	4 cut(s)	1168, 1331, 2702, 2785
MvnI	CGCG	1 cut(s)	424
MwoI	GCNNNNNNNGC	6 cut(s)	96, 415, 477, 1705, 2331, 2525
NarI	GGCGCC	1 cut(s)	243
NdeI	CATATG	1 cut(s)	2872
NdeII	GATC	7 cut(s)	878, 1144, 1250, 1561, 1617, 1750, 1990
NheI	GCTAGC	1 cut(s)	644
NlaIV	GGNNCC	9 cut(s)	54, 244, 579, 909, 1927, 2648, 2663, 2664, 2845
NmuCI	GTSAC	6 cut(s)	425, 622, 1112, 1149, 2740, 2924
NspI	RCATGY	4 cut(s)	413, 2499, 2618, 2957
PacI	TTAATTAA	1 cut(s)	558
PaeI	GCATGC	1 cut(s)	413
PaeR7I	CTCGAG	2 cut(s)	1203, 2320
PagI	TCATGA	1 cut(s)	943
PaqCI	CACCTGC	1 cut(s)	802
PceI	AGGCCT	1 cut(s)	2996
PciI	ACATGT	3 cut(s)	2495, 2614, 2953
PctI	GAATGC	5 cut(s)	350, 1441, 1687, 2353, 2836
PdmI	GAANNNNTTC	1 cut(s)	951
PfeI	GAWTC	9 cut(s)	62, 305, 855, 1031, 1390, 1409, 2368, 2429, 2780
PflMI	CCANNNNNTGG	1 cut(s)	2128
PkrI	GCNGC	6 cut(s)	482, 933, 1441, 2145, 2155, 2273
PleI	GAGTC	4 cut(s)	325, 1141, 1993, 2198
PluTI	GGCGCC	1 cut(s)	246
PmaCI	CACGTG	1 cut(s)	2929
PmlI	CACGTG	1 cut(s)	2929
PpsI	GAGTC	4 cut(s)	325, 1141, 1993, 2198
Ppu21I	YACGTR	2 cut(s)	2929, 2960
PpuMI	RGGWCCY	2 cut(s)	577, 2647
PscI	ACATGT	3 cut(s)	2495, 2614, 2953
PshAI	GACNNNNGTC	1 cut(s)	2189
PshBI	ATTAAT	2 cut(s)	554, 1575
Psp124BI	GAGCTC	4 cut(s)	34, 1323, 1701, 2766
Psp5II	RGGWCCY	2 cut(s)	577, 2647
Psp6I	CCWGG	4 cut(s)	1166, 1329, 2700, 2783
PspCI	CACGTG	1 cut(s)	2929
PspFI	CCCAGC	2 cut(s)	1017, 1922
PspGI	CCWGG	4 cut(s)	1166, 1329, 2700, 2783
PspN4I	GGNNCC	9 cut(s)	54, 244, 579, 909, 1927, 2648, 2663, 2664, 2845
PspOMI	GGGCCC	2 cut(s)	1925, 2661
PspPI	GGNCC	9 cut(s)	577, 800, 1925, 1926, 1938, 2647, 2661, 2662, 2844
PspPPI	RGGWCCY	2 cut(s)	577, 2647
PspXI	VCTCGAGB	1 cut(s)	2320
PstNI	CAGNNNCTG	1 cut(s)	2219
PsuI	RGATCY	2 cut(s)	1144, 1561
PvuII	CAGCTG	1 cut(s)	1400
RsaI	GTAC	9 cut(s)	979, 1006, 1090, 1335, 1362, 1960, 2418, 2952, 2958
RsaNI	GTAC	9 cut(s)	978, 1005, 1089, 1334, 1361, 1959, 2417, 2951, 2957
RseI	CAYNNNNRTG	1 cut(s)	2958
Rsr2I	CGGWCCG	1 cut(s)	800
RsrII	CGGWCCG	1 cut(s)	800
SacI	GAGCTC	4 cut(s)	34, 1323, 1701, 2766
SatI	GCNGC	6 cut(s)	481, 932, 1440, 2144, 2154, 2272
Sau3AI	GATC	7 cut(s)	878, 1144, 1250, 1561, 1617, 1750, 1990
Sau96I	GGNCC	9 cut(s)	577, 800, 1925, 1926, 1938, 2647, 2661, 2662, 2844
ScaI	AGTACT	1 cut(s)	1090
SchI	GAGTC	4 cut(s)	326, 1142, 1994, 2199
ScrFI	CCNGG	4 cut(s)	1168, 1331, 2702, 2785
SduI	GDGCHC	6 cut(s)	34, 1323, 1701, 1929, 2665, 2766
SexAI	ACCWGGT	1 cut(s)	1329
SfaNI	GCATC	5 cut(s)	1051, 1463, 1841, 2623, 2695
SfcI	CTRYAG	1 cut(s)	2028
SfoI	GGCGCC	1 cut(s)	244
Sfr274I	CTCGAG	2 cut(s)	1203, 2320
SinI	GGWCC	4 cut(s)	577, 800, 2647, 2844
SlaI	CTCGAG	2 cut(s)	1203, 2320
SmiMI	CAYNNNNRTG	1 cut(s)	2958
SmlI	CTYRAG	3 cut(s)	1203, 2320, 2719
SmoI	CTYRAG	3 cut(s)	1203, 2320, 2719
SpeI	ACTAGT	1 cut(s)	1967
SphI	GCATGC	1 cut(s)	413
SseBI	AGGCCT	1 cut(s)	2996
SsiI	CCGC	5 cut(s)	348, 766, 803, 1314, 2666
SspDI	GGCGCC	1 cut(s)	242
SspI	AATATT	1 cut(s)	2236
SstI	GAGCTC	4 cut(s)	34, 1323, 1701, 2766
StuI	AGGCCT	1 cut(s)	2996
StyD4I	CCNGG	4 cut(s)	1166, 1329, 2700, 2783
StyI	CCWWGG	2 cut(s)	903, 1934
TaaI	ACNGT	8 cut(s)	459, 941, 1093, 1338, 1846, 2102, 2402, 2456
TaiI	ACGT	5 cut(s)	1006, 1055, 2561, 2931, 2962
TaqI	TCGA	4 cut(s)	594, 1204, 1249, 2321
TatI	WGTACW	4 cut(s)	977, 1088, 2416, 2950
TfiI	GAWTC	9 cut(s)	62, 305, 855, 1031, 1390, 1409, 2368, 2429, 2780
TseFI	GTSAC	6 cut(s)	425, 622, 1112, 1149, 2740, 2924
TseI	GCWGC	6 cut(s)	480, 931, 1439, 2143, 2153, 2271
Tsp45I	GTSAC	6 cut(s)	425, 622, 1112, 1149, 2740, 2924
TspGWI	ACGGA	1 cut(s)	1515
Van91I	CCANNNNNTGG	1 cut(s)	2128
Vha464I	CTTAAG	1 cut(s)	2719
VpaK11BI	GGWCC	4 cut(s)	577, 800, 2647, 2844
VspI	ATTAAT	2 cut(s)	554, 1575
XagI	CCTNNNNNAGG	1 cut(s)	2975
XapI	RAATTY	5 cut(s)	781, 1725, 2014, 2551, 2605
XbaI	TCTAGA	1 cut(s)	2464
XceI	RCATGY	4 cut(s)	413, 2499, 2618, 2957
XcmI	CCANNNNNNNNNTGG	2 cut(s)	462, 2708
XhoI	CTCGAG	2 cut(s)	1203, 2320
XmnI	GAANNNNTTC	1 cut(s)	951
ZrmI	AGTACT	1 cut(s)	1090

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.