Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0008431

Physical Location & Seq

Genomic Coordinates Forward (+)

25498521 .. 25503934

Gene Structure 5414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008090

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3027 bp

ATGGGGAAGAAGGTTAAGAAGAAGGCTAGAGCTTCTCAAAAGGAGAAGTGGGTTCCATCTGATTCCCCGAAGAAGGTTGGCGAACCAAGCAGCCCAAGCGTTAAGGATGATGGTGATGATGGAGCTTCAGTTGCAAAAGTGAGAAAAGCTTGTCCTCACATTGACAAAGGTGTTGATTTGAATAAATTGCAAGCTAAAATTGGGTCTTCAGCAGTTATTAGATGTGAAGATTGTAGGGAAGGCGCCATTGATAGGAAGGGGGGTAAAGGAAAGGGCAAACATGGTAAGAAGAAAGGAGGTGCTGATTCTAAATCCGAGTCAAAATCTGTATGGCTTTGTTTAGAATGCGGTCATTATGCTTGTGGTGGGGTTGGACTTCCAATAACCCCTCAATGCCACGCAGTTCGGCATGCAAGGCAAACTCGTCACCCATTGGTGGTGCAGTTTGAAAACCCACAGTTGCGATGGTGCTTCCAGTGCAGCACACTTATTACCATTGATAAGACGGGGGAGAATGGTGAAGAAAAAGATGTCTTTTCTGATGTTGTGAAATTAATTAAGGGTCATTCATCGGAGGACTCATCAGGTGATGTCGAGGATGTATGGTTTGGTAGTGGCAGTGTGACAAGCGAAATCAAATCAGCTAGCAATACATCAAGTCTTTTGGATGGAAGAGGAGGTTATGCAGTAAGAGGCTTAGTTAATCTTGGTAACACTTGCTTCTTCAATTCTATTTTACAGAACCTTCTAGCTATTGATAGGTTGCGGGTTTACTTCTTAAATTTTGAAGCACCTGCCGGACCGCTTACTATTTCCTTGAAGAAACTCTTTACTGAAACAAAACCAGAGGCAGGATTCAAGAATGTGATAAACCCTAGATCGTTTTTCAGTTGTGTCTGTTCCAAGGCTCCCCAGTTTAGGGGCTATCAGCAGCAAGACAGTCATGAATTGCTTCGTTGCTTACTGGATGGATTGGGTACTGAGGAGTTGAGTATGAGGAAACGTACAAGTTCTTCCCAGCAAAATGAGGATTCATCAAATCCAGTTCCTACGTTTGTTGATGCTGTATTTGGGGGACAGGTATCAAGTACTGTTTGCTGTGTTGAATGTGGTCACTCATCAACTATCTATGAGTCATTCTTAGATCTGTCACTGCCAGTCCCAACCAGGAAATCCCCACCTAAGGCTTCCCTACCAAGCTCTCGAGCAAAGAAGACGAAGCTTCCACCCAAGAGGAGTGGAAAGGTTCGATCTAAAATTAACAAAGACAAGAACTCTGCAACATCTCCAAGTGTGGCAACCACATCAACCAGCGGTGAGCTCTCTAACCAGGTACAGTCAAGTTCTACTGAGCTAAATGTACCTGAACAAAATGGCTTGGTTATGAAGAATCTATCAGCTGTCCAAGAATCTCATCATGAACAAGTCTTTGAGAATGCAGCAGGAGAACAAGCATCAGCTTTGTTAGATGACTTTACATGGATGGATTATCTTGATGACAGAAATATATTAGATGACTATGATTTGACTTCAGAAAATGCTATTGTTTCAATTGTTCAAGATCGTAAAAGTATTAATACATCTCTTAATGATGTCTCACAACAGAGTGGCTCTGAGATCAGTGATAAGGATTTCAAGGTTACTGGAGAACAGAATGCAAAACCAAACTTTTCTTCAGTGAATGCTGAGGAGGACGAGCACCCATTGCAGGTTCATAGTTCTGAAATTTTATTGCTTCCATATAAAGAAGATCAGAGTTCCGAAATGTTGTTGCTTCCACATAAGGAAGGATGTTCCATCACTGGGGAAATCATGGGAGGAGAAGGAGAGGCATCGTCATCAACTGTGGGTTGCGGACAAGATGATTTTGATGGCTTTGGAGACTTATTCAATGAGCCTGAGCCTGAGGTTGTTGCTGGGCCCAGTCCAAGGCCCTCTACTGGTCAGGAAGGTACAGCAACTAGTCTTGTAGCTAGTGAGTCTGATCCTGATGAAGTTGATGATACAAATTCTCCGGTCTCTGTAGAGAGTTGTTTAGCTCATTTCATAAAGCCTGAGCTTCTTGCCAATGAAAATGCTTGGCATTGTGAGAACTGTTCCAAATCTCTGAAGCACCAAAGGTTGGAAGCAAAGAAGCGGCAAAAAGCTGCAACTAAATGTTTGATAAATGGATGTGAGACTAGAGTCCAAAGTGTTTCTCTGAGTTCAGACACTGCTGATATCAGTAATATTAGTAATGGAAATATCAAAAGCAATACTGGTTGCAACCAATTTGGTGAAAACTTGGTTTTGGATGATGGGAAGATGAATTGCTCGAGCGAAAATTGCACATCAATTGAGAATGCTCTATCAGATAAGATGATTCCTGTTGTTTGTCAACAACAAGAAGGAAACAGTGAGATGAAAGATGTACTTCCAACAGAATCAAATACTTTGGATTGCAATAACAGTGATACTCTAGAAAGTATTAGCAGTCAAGCCATTGATACATGTGCTGATGTGACTAGTTGTGCTGGATGTGCCTCTGAAAATGCTCCACAGACAAATTCTAAGTTATTAGATGATTGTGAATTAGAAGCAAGTGAAGATGAGGAAATAAATTCCAAACATGTGAAGGTGAAGAGGGATGCGACAAAACGGGTCCTAATTGACAGGGCCCCGCCTATTTTGACCATTCATCTCAAAAGGTTTAGCCAAGATCCTCGTGGTCGCTTAAGTAAATTGAACGGCCATGTCACATTCAGAGAAAAAATTGAGCTCAGACCATATATGGATTCCAGCTTTTACAGGTGCAGAGAAAAGGAGAGGTATGAATACCACCTAATCGGGGTTGTGGAGCATTCTGGGACCATGCGAGGAGGCCATTATGTTGCATATGTGAGAGGTGGTGAAAGGAGCAGAGGAAAAGCTGAGAAGGAGAAGATTGGTCACGTGTGGTATTATGCTAGTGATGCACATGTACGTGAGGTTTCCCTAGATGAGGTGCTTCGCTGTGATGCCTATATCTTATTCTATGAAAAAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009507 GO:0009536 GO:0009987 GO:0019538 GO:0019941 GO:0030163 GO:0032991 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UCH zf-UBP

Protein Analysis

1009

Amino Acids

110.19

Weight (kDa)

5.62

Isoelectric Point (pI)

47.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-UBP	PF02148	106 - 165	2.2e-13	Zn-finger in ubiquitin-hydrolases and other protein
UCH	PF00443	231 - 407	2.1e-25	Ubiquitin carboxyl-terminal hydrolase
UCH	PF00443	701 - 1005	3.5e-30	Ubiquitin carboxyl-terminal hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008431)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04860
fragaria_vesca	FvH4_4g16490 FvH4_4g16490
malus_domestica	MD04G1009400.v1.1 MD13G1284700.v1.1
prunus_persica	Prupe.1G008700_v2.0.a1 Prupe.1G008700_v2.0.a1 Prupe.1G008700_v2.0.a1 Prupe.1G008700_v2.0.a1
pyrus_communis	pycom04g00720 pycom420g01370
rosa_chinensis	RchiOBHm_Chr4g0415171
rosa_laevigata	RLG00000008090
rosa_multiflora	Rmu_sc0003748.1_g000031 Rmu_sc0033472.1_g000001
rosa_roxburghii	Rroxscaffold_5G00359000
rosa_rugosa	Rorug04G0132500 Rorug04G0132500
rosa_samantha	Rh4AG192800 Rh4BG190900 Rh4CG203600 Rh4DG190700
rosa_wichuraiana	Rw4G016390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	802
Acc36I	ACCTGC	2 cut(s)	802, 1699
AccB1I	GGYRCC	1 cut(s)	242
AccB7I	CCANNNNNTGG	1 cut(s)	2122
AciI	CCGC	7 cut(s)	348, 766, 803, 1314, 1854, 2137, 2660
AclWI	GGATC	2 cut(s)	1979, 2693
AcoI	YGGCCR	1 cut(s)	2728
AcsI	RAATTY	5 cut(s)	781, 1725, 2008, 2545, 2599
AcuI	CTGAAG	5 cut(s)	111, 192, 1515, 1659, 2129
AcvI	CACGTG	1 cut(s)	2932
AcyI	GRCGYC	1 cut(s)	243
AfaI	GTAC	8 cut(s)	979, 1006, 1090, 1335, 1362, 1954, 2412, 2961
AflII	CTTAAG	1 cut(s)	2713
AflIII	ACRYGT	4 cut(s)	2489, 2608, 2931, 2956
AhlI	ACTAGT	2 cut(s)	1961, 2504
AjnI	CCWGG	2 cut(s)	1166, 1329
AjuI	GAANNNNNNNTTGG	2 cut(s)	1657, 1689
Alw21I	GWGCWC	3 cut(s)	1323, 1701, 2760
Alw26I	GTCTC	4 cut(s)	1600, 1875, 2023, 2171
AlwI	GGATC	2 cut(s)	1979, 2693
AlwNI	CAGNNNCTG	1 cut(s)	2213
Ama87I	CYCGRG	2 cut(s)	1203, 2314
AoxI	GGCC	5 cut(s)	1919, 1931, 2655, 2728, 2860
ApaI	GGGCCC	2 cut(s)	1923, 2659
ApeKI	GCWGC	5 cut(s)	90, 480, 931, 1439, 2147
ApoI	RAATTY	5 cut(s)	781, 1725, 2008, 2545, 2599
AseI	ATTAAT	2 cut(s)	554, 1575
Asp700I	GAANNNNTTC	1 cut(s)	951
AspLEI	GCGC	1 cut(s)	245
AspS9I	GGNCC	8 cut(s)	800, 1919, 1920, 1932, 2641, 2655, 2656, 2847
AsuHPI	GGTGA	8 cut(s)	125, 419, 530, 599, 1328, 2288, 2629, 2900
AsuNHI	GCTAGC	1 cut(s)	644
AvaI	CYCGRG	2 cut(s)	1203, 2314
AvaII	GGWCC	3 cut(s)	800, 2641, 2847
AxyI	CCTNAGG	2 cut(s)	1182, 1905
BaeGI	GKGCMC	2 cut(s)	1923, 2659
BanI	GGYRCC	1 cut(s)	242
BanII	GRGCYC	4 cut(s)	1323, 1923, 2659, 2760
BarI	GAAGNNNNNNTAC	2 cut(s)	997, 1029
BauI	CACGAG	1 cut(s)	2703
BbrPI	CACGTG	1 cut(s)	2932
BbsI	GAAGAC	2 cut(s)	198, 1220
Bbv12I	GWGCWC	3 cut(s)	1323, 1701, 2760
BbvCI	CCTCAGC	1 cut(s)	1686
BbvI	GCAGC	5 cut(s)	102, 492, 943, 1451, 2134
BceAI	ACGGC	1 cut(s)	2743
BciT130I	CCWGG	2 cut(s)	1168, 1331
BcoDI	GTCTC	4 cut(s)	1600, 1875, 2023, 2171
BcuI	ACTAGT	2 cut(s)	1961, 2504
BfmI	CTRYAG	1 cut(s)	2022
BfoI	RGCGCY	1 cut(s)	246
BfrI	CTTAAG	1 cut(s)	2713
BfuAI	ACCTGC	2 cut(s)	802, 1699
BglII	AGATCT	1 cut(s)	1144
BisI	GCNGC	6 cut(s)	91, 481, 932, 1440, 2138, 2148
BlsI	GCNGC	6 cut(s)	92, 482, 933, 1441, 2139, 2149
BmcAI	AGTACT	1 cut(s)	1090
Bme1390I	CCNGG	2 cut(s)	1168, 1331
Bme18I	GGWCC	3 cut(s)	800, 2641, 2847
BmeT110I	CYCGRG	2 cut(s)	1203, 2314
BmgT120I	GGNCC	8 cut(s)	800, 1919, 1920, 1932, 2641, 2655, 2656, 2847
BmiI	GGNNCC	8 cut(s)	54, 244, 909, 1921, 2642, 2657, 2658, 2848
BmrFI	CCNGG	2 cut(s)	1168, 1331
BmrI	ACTGGG	3 cut(s)	907, 1812, 1917
BmsI	GCATC	6 cut(s)	1051, 1463, 1841, 2617, 2941, 2986
BmtI	GCTAGC	1 cut(s)	648
BmuI	ACTGGG	3 cut(s)	907, 1812, 1917
BoxI	GACNNNNGTC	1 cut(s)	2183
BpiI	GAAGAC	2 cut(s)	198, 1220
BpmI	CTGGAG	1 cut(s)	1665
Bpu10I	CCTNAGC	3 cut(s)	1686, 1899, 2055
BsaAI	YACGTR	2 cut(s)	2932, 2963
BsaHI	GRCGYC	1 cut(s)	243
BsaI	GGTCTC	1 cut(s)	2023
BsaJI	CCNNGG	2 cut(s)	903, 1928
BsaWI	WCCGGW	1 cut(s)	2014
BsaXI	ACNNNNNCTCC	4 cut(s)	114, 144, 1996, 2026
Bse21I	CCTNAGG	2 cut(s)	1182, 1905
Bse3DI	GCAATG	1 cut(s)	1703
BseBI	CCWGG	2 cut(s)	1168, 1331
BseDI	CCNNGG	2 cut(s)	903, 1928
BseMI	GCAATG	1 cut(s)	1703
BseRI	GAGGAG	6 cut(s)	690, 998, 1249, 1703, 1833, 2871
BseSI	GKGCMC	2 cut(s)	1923, 2659
BseXI	GCAGC	5 cut(s)	102, 492, 943, 1451, 2134
BseYI	CCCAGC	2 cut(s)	1017, 1916
BsgI	GTGCAG	3 cut(s)	461, 499, 2812
BshFI	GGCC	5 cut(s)	1921, 1933, 2657, 2730, 2862
BshNI	GGYRCC	1 cut(s)	242
BsiHKAI	GWGCWC	3 cut(s)	1323, 1701, 2760
BsiHKCI	CYCGRG	2 cut(s)	1203, 2314
BsiSI	CCGG	2 cut(s)	798, 2015
BslFI	GGGAC	3 cut(s)	1089, 1145, 2860
BsmAI	GTCTC	4 cut(s)	1600, 1875, 2023, 2171
BsmFI	GGGAC	3 cut(s)	1089, 1145, 2860
BsmI	GAATGC	6 cut(s)	350, 1441, 1660, 1687, 2347, 2839
BsnI	GGCC	5 cut(s)	1921, 1933, 2657, 2730, 2862
Bso31I	GGTCTC	1 cut(s)	2023
BsoBI	CYCGRG	2 cut(s)	1203, 2314
Bsp120I	GGGCCC	2 cut(s)	1919, 2655
Bsp1286I	GDGCHC	5 cut(s)	1323, 1701, 1923, 2659, 2760
Bsp143I	GATC	8 cut(s)	878, 1144, 1250, 1561, 1617, 1750, 1984, 2698
BspACI	CCGC	7 cut(s)	348, 766, 803, 1314, 1854, 2137, 2660
BspANI	GGCC	5 cut(s)	1921, 1933, 2657, 2730, 2862
BspHI	TCATGA	2 cut(s)	943, 1417
BspLI	GGNNCC	8 cut(s)	54, 244, 909, 1921, 2642, 2657, 2658, 2848
BspMI	ACCTGC	2 cut(s)	802, 1699
BspOI	GCTAGC	1 cut(s)	648
BspPI	GGATC	2 cut(s)	1979, 2693
BspT107I	GGYRCC	1 cut(s)	242
BspTI	CTTAAG	1 cut(s)	2713
BspTNI	GGTCTC	1 cut(s)	2023
BsrDI	GCAATG	1 cut(s)	1703
BssECI	CCNNGG	2 cut(s)	903, 1928
BssMI	GATC	8 cut(s)	878, 1144, 1250, 1561, 1617, 1750, 1984, 2698
BssNI	GRCGYC	1 cut(s)	243
BssSI	CACGAG	1 cut(s)	2703
BssT1I	CCWWGG	2 cut(s)	903, 1928
Bst2BI	CACGAG	1 cut(s)	2703
Bst2UI	CCWGG	2 cut(s)	1168, 1331
Bst4CI	ACNGT	8 cut(s)	459, 941, 1093, 1338, 1846, 2096, 2396, 2450
Bst6I	CTCTTC	2 cut(s)	667, 2615
BstACI	GRCGYC	1 cut(s)	243
BstAFI	CTTAAG	1 cut(s)	2713
BstAPI	GCANNNNNTGC	1 cut(s)	1705
BstBAI	YACGTR	2 cut(s)	2932, 2963
BstC8I	GCNNGC	3 cut(s)	192, 411, 646
BstENI	CCTNNNNNAGG	1 cut(s)	2978
BstH2I	RGCGCY	1 cut(s)	246
BstHHI	GCGC	1 cut(s)	245
BstKTI	GATC	8 cut(s)	881, 1147, 1253, 1564, 1620, 1753, 1987, 2701
BstMAI	GTCTC	4 cut(s)	1600, 1875, 2023, 2171
BstMBI	GATC	8 cut(s)	878, 1144, 1250, 1561, 1617, 1750, 1984, 2698
BstMWI	GCNNNNNNNGC	9 cut(s)	87, 96, 131, 415, 477, 1705, 2325, 2519, 2951
BstNI	CCWGG	2 cut(s)	1168, 1331
BstNSI	RCATGY	4 cut(s)	413, 2493, 2612, 2960
BstPAI	GACNNNNGTC	1 cut(s)	2183
BstSCI	CCNGG	2 cut(s)	1166, 1329
BstSFI	CTRYAG	1 cut(s)	2022
BstSLI	GKGCMC	2 cut(s)	1923, 2659
BstV1I	GCAGC	5 cut(s)	102, 492, 943, 1451, 2134
BstV2I	GAAGAC	2 cut(s)	198, 1220
BstX2I	RGATCY	2 cut(s)	1144, 2698
BstYI	RGATCY	2 cut(s)	1144, 2698
Bsu36I	CCTNAGG	2 cut(s)	1182, 1905
BsuRI	GGCC	5 cut(s)	1921, 1933, 2657, 2730, 2862
BtgZI	GCGATG	1 cut(s)	478
BtsI	GCAGTG	3 cut(s)	625, 1151, 2211
BtsIMutI	CAGTG	9 cut(s)	482, 625, 1151, 1627, 1683, 1800, 2211, 2401, 2455
BveI	ACCTGC	2 cut(s)	802, 1699
Cac8I	GCNNGC	3 cut(s)	192, 411, 646
CaiI	CAGNNNCTG	1 cut(s)	2213
CciI	TCATGA	2 cut(s)	943, 1417
CfoI	GCGC	1 cut(s)	245
Cfr13I	GGNCC	8 cut(s)	800, 1919, 1920, 1932, 2641, 2655, 2656, 2847
CpoI	CGGWCCG	1 cut(s)	800
CsiI	ACCWGGT	1 cut(s)	1329
Csp6I	GTAC	8 cut(s)	978, 1005, 1089, 1334, 1361, 1953, 2411, 2960
CspCI	CAANNNNNGTGG	2 cut(s)	1219, 1254
CspI	CGGWCCG	1 cut(s)	800
CviQI	GTAC	8 cut(s)	978, 1005, 1089, 1334, 1361, 1953, 2411, 2960
DinI	GGCGCC	1 cut(s)	244
DpnI	GATC	8 cut(s)	880, 1146, 1252, 1563, 1619, 1752, 1986, 2700
DpnII	GATC	8 cut(s)	878, 1144, 1250, 1561, 1617, 1750, 1984, 2698
EaeI	YGGCCR	1 cut(s)	2728
Eam1104I	CTCTTC	2 cut(s)	667, 2615
EarI	CTCTTC	2 cut(s)	667, 2615
Ecl136II	GAGCTC	2 cut(s)	1321, 2758
Eco130I	CCWWGG	2 cut(s)	903, 1928
Eco24I	GRGCYC	4 cut(s)	1323, 1923, 2659, 2760
Eco31I	GGTCTC	1 cut(s)	2023
Eco32I	GATATC	1 cut(s)	2221
Eco47I	GGWCC	3 cut(s)	800, 2641, 2847
Eco53kI	GAGCTC	2 cut(s)	1321, 2758
Eco57I	CTGAAG	5 cut(s)	111, 192, 1515, 1659, 2129
Eco72I	CACGTG	1 cut(s)	2932
Eco81I	CCTNAGG	2 cut(s)	1182, 1905
Eco88I	CYCGRG	2 cut(s)	1203, 2314
EcoICRI	GAGCTC	2 cut(s)	1321, 2758
EcoNI	CCTNNNNNAGG	1 cut(s)	2978
EcoO109I	RGGNCCY	4 cut(s)	1932, 2641, 2655, 2656
EcoRII	CCWGG	2 cut(s)	1166, 1329
EcoRV	GATATC	1 cut(s)	2221
EcoT14I	CCWWGG	2 cut(s)	903, 1928
EcoT38I	GRGCYC	4 cut(s)	1323, 1923, 2659, 2760
EgeI	GGCGCC	1 cut(s)	244
EheI	GGCGCC	1 cut(s)	244
ErhI	CCWWGG	2 cut(s)	903, 1928
FalI	AAGNNNNNCTT	4 cut(s)	812, 844, 2397, 2429
FaqI	GGGAC	3 cut(s)	1089, 1145, 2860
FauI	CCCGC	2 cut(s)	759, 2667
FauNDI	CATATG	1 cut(s)	2875
Fnu4HI	GCNGC	6 cut(s)	91, 481, 932, 1440, 2138, 2148
FriOI	GRGCYC	4 cut(s)	1323, 1923, 2659, 2760
Fsp4HI	GCNGC	6 cut(s)	91, 481, 932, 1440, 2138, 2148
GlaI	GCGC	1 cut(s)	244
GluI	GCNGC	6 cut(s)	91, 481, 932, 1440, 2138, 2148
GsaI	CCCAGC	2 cut(s)	1021, 1920
GsuI	CTGGAG	1 cut(s)	1665
HaeII	RGCGCY	1 cut(s)	246
HaeIII	GGCC	5 cut(s)	1921, 1933, 2657, 2730, 2862
HapII	CCGG	2 cut(s)	798, 2015
HhaI	GCGC	1 cut(s)	245
Hin1I	GRCGYC	1 cut(s)	243
Hin6I	GCGC	1 cut(s)	243
HinP1I	GCGC	1 cut(s)	243
HincII	GTYRAC	1 cut(s)	2378
HindII	GTYRAC	1 cut(s)	2378
HindIII	AAGCTT	2 cut(s)	147, 1220
HpaII	CCGG	2 cut(s)	798, 2015
HphI	GGTGA	8 cut(s)	125, 419, 530, 599, 1328, 2288, 2629, 2900
Hpy166II	GTNNAC	2 cut(s)	772, 2378
Hpy188III	TCNNGA	9 cut(s)	859, 944, 1203, 1418, 1493, 1559, 1946, 1988, 2459
Hpy8I	GTNNAC	2 cut(s)	772, 2378
HpyCH4III	ACNGT	8 cut(s)	459, 941, 1093, 1338, 1846, 2096, 2396, 2450
HpyCH4IV	ACGT	4 cut(s)	1003, 1052, 2931, 2962
HpyF10VI	GCNNNNNNNGC	9 cut(s)	87, 96, 131, 415, 477, 1705, 2325, 2519, 2951
HpySE526I	ACGT	4 cut(s)	1003, 1052, 2931, 2962
Hsp92I	GRCGYC	1 cut(s)	243
HspAI	GCGC	1 cut(s)	243
KasI	GGCGCC	1 cut(s)	242
Kzo9I	GATC	8 cut(s)	878, 1144, 1250, 1561, 1617, 1750, 1984, 2698
LmnI	GCTCC	5 cut(s)	122, 913, 2539, 2836, 2895
Lsp1109I	GCAGC	5 cut(s)	102, 492, 943, 1451, 2134
LweI	GCATC	6 cut(s)	1051, 1463, 1841, 2617, 2941, 2986
MabI	ACCWGGT	1 cut(s)	1329
MaeII	ACGT	4 cut(s)	1003, 1052, 2931, 2962
MaeIII	GTNAC	9 cut(s)	425, 622, 710, 1112, 1149, 1639, 2500, 2734, 2927
MalI	GATC	8 cut(s)	880, 1146, 1252, 1563, 1619, 1752, 1986, 2700
MboI	GATC	8 cut(s)	878, 1144, 1250, 1561, 1617, 1750, 1984, 2698
MfeI	CAATTG	2 cut(s)	1551, 2334
MflI	RGATCY	2 cut(s)	1144, 2698
MhlI	GDGCHC	5 cut(s)	1323, 1701, 1923, 2659, 2760
Mly113I	GGCGCC	1 cut(s)	243
MlyI	GAGTC	5 cut(s)	326, 572, 1142, 1988, 2193
MmeI	TCCRAC	3 cut(s)	352, 2103, 2441
MroXI	GAANNNNTTC	1 cut(s)	951
MslI	CAYNNNNRTG	1 cut(s)	2961
MspA1I	CMGCKG	2 cut(s)	1314, 1400
MspCI	CTTAAG	1 cut(s)	2713
MspI	CCGG	2 cut(s)	798, 2015
MspR9I	CCNGG	2 cut(s)	1168, 1331
MunI	CAATTG	2 cut(s)	1551, 2334
Mva1269I	GAATGC	6 cut(s)	350, 1441, 1660, 1687, 2347, 2839
MvaI	CCWGG	2 cut(s)	1168, 1331
MwoI	GCNNNNNNNGC	9 cut(s)	87, 96, 131, 415, 477, 1705, 2325, 2519, 2951
NarI	GGCGCC	1 cut(s)	243
NdeI	CATATG	1 cut(s)	2875
NdeII	GATC	8 cut(s)	878, 1144, 1250, 1561, 1617, 1750, 1984, 2698
NheI	GCTAGC	1 cut(s)	644
NlaIV	GGNNCC	8 cut(s)	54, 244, 909, 1921, 2642, 2657, 2658, 2848
NmuCI	GTSAC	7 cut(s)	425, 622, 1112, 1149, 2500, 2734, 2927
NspI	RCATGY	4 cut(s)	413, 2493, 2612, 2960
PacI	TTAATTAA	1 cut(s)	558
PaeI	GCATGC	1 cut(s)	413
PaeR7I	CTCGAG	2 cut(s)	1203, 2314
PagI	TCATGA	2 cut(s)	943, 1417
PaqCI	CACCTGC	1 cut(s)	802
PciI	ACATGT	3 cut(s)	2489, 2608, 2956
PctI	GAATGC	6 cut(s)	350, 1441, 1660, 1687, 2347, 2839
PdmI	GAANNNNTTC	1 cut(s)	951
PfeI	GAWTC	9 cut(s)	62, 305, 855, 1031, 1390, 1409, 2362, 2423, 2774
PflMI	CCANNNNNTGG	1 cut(s)	2122
PkrI	GCNGC	6 cut(s)	92, 482, 933, 1441, 2139, 2149
PleI	GAGTC	5 cut(s)	325, 572, 1141, 1987, 2192
PluTI	GGCGCC	1 cut(s)	246
PmaCI	CACGTG	1 cut(s)	2932
PmlI	CACGTG	1 cut(s)	2932
PpsI	GAGTC	5 cut(s)	325, 572, 1141, 1987, 2192
Ppu21I	YACGTR	2 cut(s)	2932, 2963
PpuMI	RGGWCCY	1 cut(s)	2641
PscI	ACATGT	3 cut(s)	2489, 2608, 2956
PshAI	GACNNNNGTC	1 cut(s)	2183
PshBI	ATTAAT	2 cut(s)	554, 1575
Psp124BI	GAGCTC	2 cut(s)	1323, 2760
Psp5II	RGGWCCY	1 cut(s)	2641
Psp6I	CCWGG	2 cut(s)	1166, 1329
PspCI	CACGTG	1 cut(s)	2932
PspFI	CCCAGC	2 cut(s)	1017, 1916
PspGI	CCWGG	2 cut(s)	1166, 1329
PspN4I	GGNNCC	8 cut(s)	54, 244, 909, 1921, 2642, 2657, 2658, 2848
PspOMI	GGGCCC	2 cut(s)	1919, 2655
PspPI	GGNCC	8 cut(s)	800, 1919, 1920, 1932, 2641, 2655, 2656, 2847
PspPPI	RGGWCCY	1 cut(s)	2641
PspXI	VCTCGAGB	1 cut(s)	2314
PstNI	CAGNNNCTG	1 cut(s)	2213
PsuI	RGATCY	2 cut(s)	1144, 2698
PvuII	CAGCTG	1 cut(s)	1400
RsaI	GTAC	8 cut(s)	979, 1006, 1090, 1335, 1362, 1954, 2412, 2961
RsaNI	GTAC	8 cut(s)	978, 1005, 1089, 1334, 1361, 1953, 2411, 2960
RseI	CAYNNNNRTG	1 cut(s)	2961
Rsr2I	CGGWCCG	1 cut(s)	800
RsrII	CGGWCCG	1 cut(s)	800
SacI	GAGCTC	2 cut(s)	1323, 2760
SatI	GCNGC	6 cut(s)	91, 481, 932, 1440, 2138, 2148
Sau3AI	GATC	8 cut(s)	878, 1144, 1250, 1561, 1617, 1750, 1984, 2698
Sau96I	GGNCC	8 cut(s)	800, 1919, 1920, 1932, 2641, 2655, 2656, 2847
ScaI	AGTACT	1 cut(s)	1090
SchI	GAGTC	5 cut(s)	326, 572, 1142, 1988, 2193
ScrFI	CCNGG	2 cut(s)	1168, 1331
SduI	GDGCHC	5 cut(s)	1323, 1701, 1923, 2659, 2760
SexAI	ACCWGGT	1 cut(s)	1329
SfaNI	GCATC	6 cut(s)	1051, 1463, 1841, 2617, 2941, 2986
SfcI	CTRYAG	1 cut(s)	2022
SfoI	GGCGCC	1 cut(s)	244
Sfr274I	CTCGAG	2 cut(s)	1203, 2314
SinI	GGWCC	3 cut(s)	800, 2641, 2847
SlaI	CTCGAG	2 cut(s)	1203, 2314
SmiMI	CAYNNNNRTG	1 cut(s)	2961
SmlI	CTYRAG	3 cut(s)	1203, 2314, 2713
SmoI	CTYRAG	3 cut(s)	1203, 2314, 2713
SpeI	ACTAGT	2 cut(s)	1961, 2504
SphI	GCATGC	1 cut(s)	413
SsiI	CCGC	7 cut(s)	348, 766, 803, 1314, 1854, 2137, 2660
SspDI	GGCGCC	1 cut(s)	242
SspI	AATATT	1 cut(s)	2230
SstI	GAGCTC	2 cut(s)	1323, 2760
StyD4I	CCNGG	2 cut(s)	1166, 1329
StyI	CCWWGG	2 cut(s)	903, 1928
TaaI	ACNGT	8 cut(s)	459, 941, 1093, 1338, 1846, 2096, 2396, 2450
TaiI	ACGT	4 cut(s)	1006, 1055, 2934, 2965
TaqI	TCGA	4 cut(s)	594, 1204, 1249, 2315
TatI	WGTACW	2 cut(s)	1088, 2410
TauI	GCSGC	1 cut(s)	2140
TfiI	GAWTC	9 cut(s)	62, 305, 855, 1031, 1390, 1409, 2362, 2423, 2774
TscAI	CASTG	9 cut(s)	482, 625, 1158, 1627, 1683, 1807, 2218, 2401, 2455
TseFI	GTSAC	7 cut(s)	425, 622, 1112, 1149, 2500, 2734, 2927
TseI	GCWGC	5 cut(s)	90, 480, 931, 1439, 2147
Tsp45I	GTSAC	7 cut(s)	425, 622, 1112, 1149, 2500, 2734, 2927
TspRI	CASTG	9 cut(s)	482, 625, 1158, 1627, 1683, 1807, 2218, 2401, 2455
Van91I	CCANNNNNTGG	1 cut(s)	2122
Vha464I	CTTAAG	1 cut(s)	2713
VpaK11BI	GGWCC	3 cut(s)	800, 2641, 2847
VspI	ATTAAT	2 cut(s)	554, 1575
XagI	CCTNNNNNAGG	1 cut(s)	2978
XapI	RAATTY	5 cut(s)	781, 1725, 2008, 2545, 2599
XbaI	TCTAGA	1 cut(s)	2458
XceI	RCATGY	4 cut(s)	413, 2493, 2612, 2960
XcmI	CCANNNNNNNNNTGG	2 cut(s)	462, 2702
XhoI	CTCGAG	2 cut(s)	1203, 2314
XmnI	GAANNNNTTC	1 cut(s)	951
ZrmI	AGTACT	1 cut(s)	1090

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.