Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0008431

Physical Location & Seq

Genomic Coordinates Reverse (-)

37443684 .. 37448821

Gene Structure 5138 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G016390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2985 bp

ATGGGGAAGAAGGTTAAGAAGAAGGCTAGAGCTCCTCAAAAGGAGAAGTGGGTTCCATCTGATTCCCCGAAGAAGGTTGCTGAACAAAGCAACCCAAGCGTTAAGGATGATGGTGATGATGGAGTTTCAGTTGCAAAAGTGAGAAAAGCTTGTCCTCACATTGACAAAGGTGTTGATTTGAATAAATTGCAAGCTAAAATTGGGTCTTCAGCAGTTGTTAGGTGTGAAGATTGTAGGGAAGGCGCCATTGATAGGAAGGGGGGAGGTGCTGATTCTAAATCCGAGTCAAAATCTGTATGGCTTTGTTTAGAATGTGGTCATTTTGCTTGTGGTGGGGTTGGACTTCCAATAACCCCTCAGTGCCACGCAGTTCGGCATGCAAGGCAAACTCGTCACCCATTGGTGGTGCAGTTTGAAAACCCACAGTTGCGATGGTGCTTCCAGTGCAGCACACTTATTACCATTGATAAGACGGGGGAGAATGGTGAAGAAAAAGATGTCTTTTCTGATGTTGTGAAATTAATTAAGGGTCATTCGTCAGAGGACTCATCAGGTGATGTCGAGGATGTATGGTTTGGTAGTGGCAGTGTGACAAGCGAAATCAAATCAGCTAGCAATACATCAAGCCTTTTGGATGGAAGAGGAGGTTATGCAGTAAGAGGCTTAGTTAATCTTGGTAACACTTGCTTCTTCAATTCTATTTTACAGAACCTTCTAGCTATTGATAGGTTGCGGGTTTACTTCTTAAATTTTGAAGCACCTGCCGGACCACTTACTATTTCCTTGAAGAAACTCTTTACTGAAACAAAACCAGAGGCAGGATTCAAGAATGTGATAAACCCTAGATCGTTTTTCGGTTGCGTCTGTTCCAAGGCTCCCCAGTTTAGGGGCTATCAGCAGCAAGACAGTCATGAATTGCTTCGTTGCTTACTGGATGGATTGTGTACTGAGGAGTTGAGTATGAGGAAACGTACAAGTTCTTCCCAGCAAAATGAGGATTCATCAAATCCAGTTCATACGTTTGTTGATGCTGTATTTGGGGGACAGGTATCAAGTACTGTTTGCTGTGTTGAATGTGGTCACTCATCAACTATCTATGAGTCATTCTTAGATCTGTCACTGCCAGTCCCAACCAGGAAATCCCCACCTAAGGCTTCCCTACCAAGCTCTCGAGCAAAGAAGACGAAGCTTCCACCCAAGAGGAGTGGAAAGGTTCGATCTAAAATTAACAAAGACAAGAACTCTGCAACATCTCCAAGTGTGGCAACCACATCAACCAGCGGTGAGCTCTCTAACCAGGTACAGTCAAGTTCTACTGAGCTAAATGTACCTGAACAAAACGGCTTGGTTATGAAGAATCTATCAGCTGTCCAAGAATCTCAACATGAACAAGTCTTTGAGAATGCAGCAGGAGAACAAGCATCAGCTTTGTTAGATGACTTTACATGGATGGATTATCTTGATGACGGAAATATATTAGATGACTATGATTTGACTTCCGAAAATGCAATTGTTTCAATTGTTCAAGATCCTAAAAGTATTAATACATCTCTTAATGATGTCTCACAACAGAGTGGCTCTGAGATCAGTGATAAGGATTTCAAGGTTACTGGAGAACAGAATGTAAAACCAAGCTTTTCTTCAGTGAATGCTGAGGAGGACGAGCTCCCATTGCAGGTTCAAAGTTCTGAAATTTTATTGCTTCCATATAAAGAAGATCAGAGTTCTGAAATGTTGTTGCATCCACATACGGAAGGATGTTCCATCACTGGGGAAACCATGGGAGGAGAAGGAGAGGCATCGTCATCAACTGTGGGTTGTGGACAAGATGATTTTGATGGCTTTGGAGACTTATTCAATGAGCCTGAGCCTGAGGTTGTTGCTGGGCCCAGTCCAAGGCCCTCGACTGGTGAGGAAGGTACAGCAACTAGTCTTGTAGCTAGTGAGTCTGATCCTGATGAAGTTGATGATACAAATTCTCCAGTCTCTGTAGAGAGTTGTTTAGCTCATTTCATAAAGCCTGAGCTTCTTGCCAATGAAAATGCTTGGCATTGTGAGAACTGTTCCAAATCTCTGAAGCACCAAAGGTTGGAAGCAAAGAAGCGGCAAAAAGCTGCAACTAAATGTTTGATAAATGGATGTGAGACTAGAGTCCAAAGTGTTTCTCTGAGTTCAGACACTGCTGATATCAGTAATATTAGTAATGGAAATATCAAAAGCAATACTGGTTGCAACCAATTTGGTGAAAACTTGGTTTTGGATGATGGGAAGATGAATTGCTCGAGCGAAAATTGCACATTAGTTGAGAATGCTCTATCAGATAAGATGATTCCTGTTGTTTGTCAACAACAAGAAGGAAACAGTGAGATGAAAGATGTACTTCCAACAGAATCAAATACTTTGGATTGCAATAACAGTGATACTCTAGAAAGTATTAGCAGTCAAGCCATTGATACATGTGCTGATGTGCCTAGTTGTGCTGGATGTGCCTCTGAAAATGCTCCACAGACAAATTCTAAGTTATTAGATGATTGTGAATTAGAAGCAAGTGAAGATGAGGAAATAAATTCCAAACATGTGAAGGTGAAGAGGGATGCGACAAAACGGGTCCTAATTGACAGGGCCCCGCCTATTTTGACCATTCATCTCAAAAGGTTTAGCCAAGATGCTCGTGGTCGCTTAAGTAAATTGAACGGCCATGTCACTTTCAGAGAAAAAATTGAGCTCAGACCATATATGGATTCCAGGTGCAGAGAAAAGGAGAGGTATGAATACCACCTAATCGGGGTTGTGGAGCATTCTGGGACCATGCGAGGAGGCCATTATGTTGCATATGTGAGAGGTGGTGAAAGGAGCAGAGGAAAAGCTGAGAAGGAGAAGATTGGTCACGTGTGGTATTATGCTAGTGATGCACATGTACGTGAGGTTTCCCTAGATGAGGTGCTTCGCTGTGAGGCCTATATCTTATTCTATGAAAAAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009507 GO:0009536 GO:0009987 GO:0019538 GO:0019941 GO:0030163 GO:0032991 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UCH zf-UBP

Protein Analysis

994

Amino Acids

108.57

Weight (kDa)

5.26

Isoelectric Point (pI)

48.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-UBP	PF02148	75 - 154	2.6e-13	Zn-finger in ubiquitin-hydrolases and other protein
UCH	PF00443	220 - 395	1.4e-24	Ubiquitin carboxyl-terminal hydrolase
UCH	PF00443	691 - 991	5.8e-31	Ubiquitin carboxyl-terminal hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008431)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04860
fragaria_vesca	FvH4_4g16490 FvH4_4g16490
malus_domestica	MD04G1009400.v1.1 MD13G1284700.v1.1
prunus_persica	Prupe.1G008700_v2.0.a1 Prupe.1G008700_v2.0.a1 Prupe.1G008700_v2.0.a1 Prupe.1G008700_v2.0.a1
pyrus_communis	pycom04g00720 pycom420g01370
rosa_chinensis	RchiOBHm_Chr4g0415171
rosa_laevigata	RLG00000008090
rosa_multiflora	Rmu_sc0003748.1_g000031 Rmu_sc0033472.1_g000001
rosa_roxburghii	Rroxscaffold_5G00359000
rosa_rugosa	Rorug04G0132500 Rorug04G0132500
rosa_samantha	Rh4AG192800 Rh4BG190900 Rh4CG203600 Rh4DG190700
rosa_wichuraiana	Rw4G016390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	769
Acc36I	ACCTGC	2 cut(s)	769, 1666
AccB1I	GGYRCC	1 cut(s)	242
AccB7I	CCANNNNNTGG	1 cut(s)	2089
AciI	CCGC	4 cut(s)	733, 1281, 2104, 2627
AclWI	GGATC	2 cut(s)	1523, 1946
AcoI	YGGCCR	1 cut(s)	2695
AcsI	RAATTY	5 cut(s)	748, 1692, 1975, 2512, 2566
AcuI	CTGAAG	3 cut(s)	192, 1626, 2096
AcvI	CACGTG	1 cut(s)	2890
AcyI	GRCGYC	1 cut(s)	243
AfaI	GTAC	8 cut(s)	946, 973, 1057, 1302, 1329, 1921, 2379, 2919
AflII	CTTAAG	1 cut(s)	2680
AflIII	ACRYGT	4 cut(s)	2456, 2575, 2889, 2914
AhlI	ACTAGT	1 cut(s)	1928
AjnI	CCWGG	3 cut(s)	1133, 1296, 2744
AjuI	GAANNNNNNNTTGG	2 cut(s)	1624, 1656
Alw21I	GWGCWC	4 cut(s)	34, 1290, 1668, 2727
Alw26I	GTCTC	4 cut(s)	1567, 1842, 1990, 2138
AlwI	GGATC	2 cut(s)	1523, 1946
AlwNI	CAGNNNCTG	2 cut(s)	1988, 2180
Ama87I	CYCGRG	2 cut(s)	1170, 2281
AoxI	GGCC	6 cut(s)	1886, 1898, 2622, 2695, 2818, 2955
ApaI	GGGCCC	2 cut(s)	1890, 2626
ApeKI	GCWGC	4 cut(s)	447, 898, 1406, 2114
ApoI	RAATTY	5 cut(s)	748, 1692, 1975, 2512, 2566
AseI	ATTAAT	2 cut(s)	521, 1542
Asp700I	GAANNNNTTC	1 cut(s)	918
AspLEI	GCGC	1 cut(s)	245
AspS9I	GGNCC	8 cut(s)	767, 1886, 1887, 1899, 2608, 2622, 2623, 2805
AsuHPI	GGTGA	9 cut(s)	125, 386, 497, 566, 1295, 1922, 2255, 2596, 2858
AsuNHI	GCTAGC	1 cut(s)	611
AvaI	CYCGRG	2 cut(s)	1170, 2281
AvaII	GGWCC	3 cut(s)	767, 2608, 2805
AxyI	CCTNAGG	2 cut(s)	1149, 1872
BaeGI	GKGCMC	2 cut(s)	1890, 2626
BanI	GGYRCC	1 cut(s)	242
BanII	GRGCYC	6 cut(s)	34, 1290, 1668, 1890, 2626, 2727
BarI	GAAGNNNNNNTAC	2 cut(s)	964, 996
BauI	CACGAG	1 cut(s)	2670
BbrPI	CACGTG	1 cut(s)	2890
BbsI	GAAGAC	2 cut(s)	198, 1187
Bbv12I	GWGCWC	4 cut(s)	34, 1290, 1668, 2727
BbvCI	CCTCAGC	1 cut(s)	1653
BbvI	GCAGC	4 cut(s)	459, 910, 1418, 2101
BceAI	ACGGC	2 cut(s)	1357, 2710
BciT130I	CCWGG	3 cut(s)	1135, 1298, 2746
BcoDI	GTCTC	4 cut(s)	1567, 1842, 1990, 2138
BcuI	ACTAGT	1 cut(s)	1928
BfmI	CTRYAG	1 cut(s)	1989
BfoI	RGCGCY	1 cut(s)	246
BfrI	CTTAAG	1 cut(s)	2680
BfuAI	ACCTGC	2 cut(s)	769, 1666
BglII	AGATCT	1 cut(s)	1111
BisI	GCNGC	5 cut(s)	448, 899, 1407, 2105, 2115
BlsI	GCNGC	5 cut(s)	449, 900, 1408, 2106, 2116
BmcAI	AGTACT	1 cut(s)	1057
Bme1390I	CCNGG	3 cut(s)	1135, 1298, 2746
Bme18I	GGWCC	3 cut(s)	767, 2608, 2805
BmeT110I	CYCGRG	2 cut(s)	1170, 2281
BmgT120I	GGNCC	8 cut(s)	767, 1886, 1887, 1899, 2608, 2622, 2623, 2805
BmiI	GGNNCC	8 cut(s)	54, 244, 876, 1888, 2609, 2624, 2625, 2806
BmrFI	CCNGG	3 cut(s)	1135, 1298, 2746
BmrI	ACTGGG	3 cut(s)	874, 1779, 1884
BmsI	GCATC	7 cut(s)	1018, 1430, 1750, 1808, 2584, 2656, 2899
BmtI	GCTAGC	1 cut(s)	615
BmuI	ACTGGG	3 cut(s)	874, 1779, 1884
BoxI	GACNNNNGTC	1 cut(s)	2150
BpiI	GAAGAC	2 cut(s)	198, 1187
BpmI	CTGGAG	2 cut(s)	1632, 1965
Bpu10I	CCTNAGC	3 cut(s)	1653, 1866, 2022
BsaAI	YACGTR	2 cut(s)	2890, 2921
BsaHI	GRCGYC	1 cut(s)	243
BsaJI	CCNNGG	3 cut(s)	870, 1779, 1895
BsaXI	ACNNNNNCTCC	4 cut(s)	114, 144, 1963, 1993
Bse21I	CCTNAGG	2 cut(s)	1149, 1872
Bse3DI	GCAATG	1 cut(s)	1670
BseBI	CCWGG	3 cut(s)	1135, 1298, 2746
BseDI	CCNNGG	3 cut(s)	870, 1779, 1895
BseMI	GCAATG	1 cut(s)	1670
BseRI	GAGGAG	7 cut(s)	24, 657, 965, 1216, 1670, 1800, 2829
BseSI	GKGCMC	2 cut(s)	1890, 2626
BseXI	GCAGC	4 cut(s)	459, 910, 1418, 2101
BseYI	CCCAGC	2 cut(s)	984, 1883
BsgI	GTGCAG	3 cut(s)	428, 466, 2770
BshFI	GGCC	6 cut(s)	1888, 1900, 2624, 2697, 2820, 2957
BshNI	GGYRCC	1 cut(s)	242
BsiHKAI	GWGCWC	4 cut(s)	34, 1290, 1668, 2727
BsiHKCI	CYCGRG	2 cut(s)	1170, 2281
BsiSI	CCGG	1 cut(s)	765
BslFI	GGGAC	3 cut(s)	1056, 1112, 2818
BsmAI	GTCTC	4 cut(s)	1567, 1842, 1990, 2138
BsmFI	GGGAC	3 cut(s)	1056, 1112, 2818
BsmI	GAATGC	4 cut(s)	1408, 1654, 2314, 2797
BsnI	GGCC	6 cut(s)	1888, 1900, 2624, 2697, 2820, 2957
BsoBI	CYCGRG	2 cut(s)	1170, 2281
Bsp120I	GGGCCC	2 cut(s)	1886, 2622
Bsp1286I	GDGCHC	6 cut(s)	34, 1290, 1668, 1890, 2626, 2727
Bsp143I	GATC	7 cut(s)	845, 1111, 1217, 1528, 1584, 1717, 1951
Bsp19I	CCATGG	1 cut(s)	1779
BspACI	CCGC	4 cut(s)	733, 1281, 2104, 2627
BspANI	GGCC	6 cut(s)	1888, 1900, 2624, 2697, 2820, 2957
BspHI	TCATGA	1 cut(s)	910
BspLI	GGNNCC	8 cut(s)	54, 244, 876, 1888, 2609, 2624, 2625, 2806
BspMI	ACCTGC	2 cut(s)	769, 1666
BspOI	GCTAGC	1 cut(s)	615
BspPI	GGATC	2 cut(s)	1523, 1946
BspT107I	GGYRCC	1 cut(s)	242
BspTI	CTTAAG	1 cut(s)	2680
BsrDI	GCAATG	1 cut(s)	1670
BssECI	CCNNGG	3 cut(s)	870, 1779, 1895
BssMI	GATC	7 cut(s)	845, 1111, 1217, 1528, 1584, 1717, 1951
BssNI	GRCGYC	1 cut(s)	243
BssSI	CACGAG	1 cut(s)	2670
BssT1I	CCWWGG	3 cut(s)	870, 1779, 1895
Bst2BI	CACGAG	1 cut(s)	2670
Bst2UI	CCWGG	3 cut(s)	1135, 1298, 2746
Bst4CI	ACNGT	8 cut(s)	426, 908, 1060, 1305, 1813, 2063, 2363, 2417
Bst6I	CTCTTC	2 cut(s)	634, 2582
BstACI	GRCGYC	1 cut(s)	243
BstAFI	CTTAAG	1 cut(s)	2680
BstBAI	YACGTR	2 cut(s)	2890, 2921
BstC8I	GCNNGC	3 cut(s)	192, 378, 613
BstDSI	CCRYGG	1 cut(s)	1779
BstENI	CCTNNNNNAGG	1 cut(s)	2936
BstH2I	RGCGCY	1 cut(s)	246
BstHHI	GCGC	1 cut(s)	245
BstKTI	GATC	7 cut(s)	848, 1114, 1220, 1531, 1587, 1720, 1954
BstMAI	GTCTC	4 cut(s)	1567, 1842, 1990, 2138
BstMBI	GATC	7 cut(s)	845, 1111, 1217, 1528, 1584, 1717, 1951
BstMWI	GCNNNNNNNGC	7 cut(s)	96, 382, 444, 1672, 2292, 2486, 2909
BstNI	CCWGG	3 cut(s)	1135, 1298, 2746
BstNSI	RCATGY	4 cut(s)	380, 2460, 2579, 2918
BstPAI	GACNNNNGTC	1 cut(s)	2150
BstSCI	CCNGG	3 cut(s)	1133, 1296, 2744
BstSFI	CTRYAG	1 cut(s)	1989
BstSLI	GKGCMC	2 cut(s)	1890, 2626
BstV1I	GCAGC	4 cut(s)	459, 910, 1418, 2101
BstV2I	GAAGAC	2 cut(s)	198, 1187
BstX2I	RGATCY	2 cut(s)	1111, 1528
BstYI	RGATCY	2 cut(s)	1111, 1528
Bsu36I	CCTNAGG	2 cut(s)	1149, 1872
BsuRI	GGCC	6 cut(s)	1888, 1900, 2624, 2697, 2820, 2957
BtgI	CCRYGG	1 cut(s)	1779
BtgZI	GCGATG	1 cut(s)	445
BtsI	GCAGTG	3 cut(s)	592, 1118, 2178
BveI	ACCTGC	2 cut(s)	769, 1666
Cac8I	GCNNGC	3 cut(s)	192, 378, 613
CaiI	CAGNNNCTG	2 cut(s)	1988, 2180
CciI	TCATGA	1 cut(s)	910
CfoI	GCGC	1 cut(s)	245
Cfr13I	GGNCC	8 cut(s)	767, 1886, 1887, 1899, 2608, 2622, 2623, 2805
CseI	GACGC	1 cut(s)	850
CsiI	ACCWGGT	1 cut(s)	1296
Csp6I	GTAC	8 cut(s)	945, 972, 1056, 1301, 1328, 1920, 2378, 2918
CspCI	CAANNNNNGTGG	2 cut(s)	1186, 1221
CviQI	GTAC	8 cut(s)	945, 972, 1056, 1301, 1328, 1920, 2378, 2918
DinI	GGCGCC	1 cut(s)	244
DpnI	GATC	7 cut(s)	847, 1113, 1219, 1530, 1586, 1719, 1953
DpnII	GATC	7 cut(s)	845, 1111, 1217, 1528, 1584, 1717, 1951
EaeI	YGGCCR	1 cut(s)	2695
Eam1104I	CTCTTC	2 cut(s)	634, 2582
EarI	CTCTTC	2 cut(s)	634, 2582
Ecl136II	GAGCTC	4 cut(s)	32, 1288, 1666, 2725
Eco130I	CCWWGG	3 cut(s)	870, 1779, 1895
Eco147I	AGGCCT	1 cut(s)	2957
Eco24I	GRGCYC	6 cut(s)	34, 1290, 1668, 1890, 2626, 2727
Eco32I	GATATC	1 cut(s)	2188
Eco47I	GGWCC	3 cut(s)	767, 2608, 2805
Eco53kI	GAGCTC	4 cut(s)	32, 1288, 1666, 2725
Eco57I	CTGAAG	3 cut(s)	192, 1626, 2096
Eco72I	CACGTG	1 cut(s)	2890
Eco81I	CCTNAGG	2 cut(s)	1149, 1872
Eco88I	CYCGRG	2 cut(s)	1170, 2281
EcoICRI	GAGCTC	4 cut(s)	32, 1288, 1666, 2725
EcoNI	CCTNNNNNAGG	1 cut(s)	2936
EcoO109I	RGGNCCY	4 cut(s)	1899, 2608, 2622, 2623
EcoRII	CCWGG	3 cut(s)	1133, 1296, 2744
EcoRV	GATATC	1 cut(s)	2188
EcoT14I	CCWWGG	3 cut(s)	870, 1779, 1895
EcoT38I	GRGCYC	6 cut(s)	34, 1290, 1668, 1890, 2626, 2727
EgeI	GGCGCC	1 cut(s)	244
EheI	GGCGCC	1 cut(s)	244
ErhI	CCWWGG	3 cut(s)	870, 1779, 1895
FalI	AAGNNNNNCTT	6 cut(s)	779, 811, 1624, 1656, 2364, 2396
FaqI	GGGAC	3 cut(s)	1056, 1112, 2818
FauI	CCCGC	2 cut(s)	726, 2634
FauNDI	CATATG	1 cut(s)	2833
Fnu4HI	GCNGC	5 cut(s)	448, 899, 1407, 2105, 2115
FriOI	GRGCYC	6 cut(s)	34, 1290, 1668, 1890, 2626, 2727
Fsp4HI	GCNGC	5 cut(s)	448, 899, 1407, 2105, 2115
GlaI	GCGC	1 cut(s)	244
GluI	GCNGC	5 cut(s)	448, 899, 1407, 2105, 2115
GsaI	CCCAGC	2 cut(s)	988, 1887
GsuI	CTGGAG	2 cut(s)	1632, 1965
HaeII	RGCGCY	1 cut(s)	246
HaeIII	GGCC	6 cut(s)	1888, 1900, 2624, 2697, 2820, 2957
HapII	CCGG	1 cut(s)	765
HgaI	GACGC	1 cut(s)	850
HhaI	GCGC	1 cut(s)	245
Hin1I	GRCGYC	1 cut(s)	243
Hin6I	GCGC	1 cut(s)	243
HinP1I	GCGC	1 cut(s)	243
HincII	GTYRAC	1 cut(s)	2345
HindII	GTYRAC	1 cut(s)	2345
HindIII	AAGCTT	3 cut(s)	147, 1187, 1633
HpaII	CCGG	1 cut(s)	765
HphI	GGTGA	9 cut(s)	125, 386, 497, 566, 1295, 1922, 2255, 2596, 2858
Hpy166II	GTNNAC	4 cut(s)	739, 945, 1823, 2345
Hpy188III	TCNNGA	7 cut(s)	826, 911, 1170, 1460, 1526, 1955, 2426
Hpy8I	GTNNAC	4 cut(s)	739, 945, 1823, 2345
HpyCH4III	ACNGT	8 cut(s)	426, 908, 1060, 1305, 1813, 2063, 2363, 2417
HpyCH4IV	ACGT	4 cut(s)	970, 1019, 2889, 2920
HpyF10VI	GCNNNNNNNGC	7 cut(s)	96, 382, 444, 1672, 2292, 2486, 2909
HpySE526I	ACGT	4 cut(s)	970, 1019, 2889, 2920
Hsp92I	GRCGYC	1 cut(s)	243
HspAI	GCGC	1 cut(s)	243
KasI	GGCGCC	1 cut(s)	242
Kzo9I	GATC	7 cut(s)	845, 1111, 1217, 1528, 1584, 1717, 1951
LmnI	GCTCC	6 cut(s)	37, 880, 1671, 2506, 2794, 2853
Lsp1109I	GCAGC	4 cut(s)	459, 910, 1418, 2101
LweI	GCATC	7 cut(s)	1018, 1430, 1750, 1808, 2584, 2656, 2899
MabI	ACCWGGT	1 cut(s)	1296
MaeII	ACGT	4 cut(s)	970, 1019, 2889, 2920
MaeIII	GTNAC	8 cut(s)	392, 589, 677, 1079, 1116, 1606, 2701, 2885
MalI	GATC	7 cut(s)	847, 1113, 1219, 1530, 1586, 1719, 1953
MboI	GATC	7 cut(s)	845, 1111, 1217, 1528, 1584, 1717, 1951
MfeI	CAATTG	2 cut(s)	1509, 1518
MflI	RGATCY	2 cut(s)	1111, 1528
MhlI	GDGCHC	6 cut(s)	34, 1290, 1668, 1890, 2626, 2727
Mly113I	GGCGCC	1 cut(s)	243
MlyI	GAGTC	5 cut(s)	293, 539, 1109, 1955, 2160
MmeI	TCCRAC	3 cut(s)	319, 2070, 2408
MroXI	GAANNNNTTC	1 cut(s)	918
MslI	CAYNNNNRTG	1 cut(s)	2919
MspA1I	CMGCKG	2 cut(s)	1281, 1367
MspCI	CTTAAG	1 cut(s)	2680
MspI	CCGG	1 cut(s)	765
MspR9I	CCNGG	3 cut(s)	1135, 1298, 2746
MunI	CAATTG	2 cut(s)	1509, 1518
Mva1269I	GAATGC	4 cut(s)	1408, 1654, 2314, 2797
MvaI	CCWGG	3 cut(s)	1135, 1298, 2746
MwoI	GCNNNNNNNGC	7 cut(s)	96, 382, 444, 1672, 2292, 2486, 2909
NarI	GGCGCC	1 cut(s)	243
NcoI	CCATGG	1 cut(s)	1779
NdeI	CATATG	1 cut(s)	2833
NdeII	GATC	7 cut(s)	845, 1111, 1217, 1528, 1584, 1717, 1951
NheI	GCTAGC	1 cut(s)	611
NlaIV	GGNNCC	8 cut(s)	54, 244, 876, 1888, 2609, 2624, 2625, 2806
NmuCI	GTSAC	6 cut(s)	392, 589, 1079, 1116, 2701, 2885
NspI	RCATGY	4 cut(s)	380, 2460, 2579, 2918
PacI	TTAATTAA	1 cut(s)	525
PaeI	GCATGC	1 cut(s)	380
PaeR7I	CTCGAG	2 cut(s)	1170, 2281
PagI	TCATGA	1 cut(s)	910
PaqCI	CACCTGC	1 cut(s)	769
PceI	AGGCCT	1 cut(s)	2957
PciI	ACATGT	3 cut(s)	2456, 2575, 2914
PctI	GAATGC	4 cut(s)	1408, 1654, 2314, 2797
PdmI	GAANNNNTTC	1 cut(s)	918
PfeI	GAWTC	9 cut(s)	62, 272, 822, 998, 1357, 1376, 2329, 2390, 2741
PflMI	CCANNNNNTGG	1 cut(s)	2089
PkrI	GCNGC	5 cut(s)	449, 900, 1408, 2106, 2116
PleI	GAGTC	5 cut(s)	292, 539, 1108, 1954, 2159
PluTI	GGCGCC	1 cut(s)	246
PmaCI	CACGTG	1 cut(s)	2890
PmlI	CACGTG	1 cut(s)	2890
PpsI	GAGTC	5 cut(s)	292, 539, 1108, 1954, 2159
Ppu21I	YACGTR	2 cut(s)	2890, 2921
PpuMI	RGGWCCY	1 cut(s)	2608
PscI	ACATGT	3 cut(s)	2456, 2575, 2914
PshAI	GACNNNNGTC	1 cut(s)	2150
PshBI	ATTAAT	2 cut(s)	521, 1542
Psp124BI	GAGCTC	4 cut(s)	34, 1290, 1668, 2727
Psp5II	RGGWCCY	1 cut(s)	2608
Psp6I	CCWGG	3 cut(s)	1133, 1296, 2744
PspCI	CACGTG	1 cut(s)	2890
PspFI	CCCAGC	2 cut(s)	984, 1883
PspGI	CCWGG	3 cut(s)	1133, 1296, 2744
PspN4I	GGNNCC	8 cut(s)	54, 244, 876, 1888, 2609, 2624, 2625, 2806
PspOMI	GGGCCC	2 cut(s)	1886, 2622
PspPI	GGNCC	8 cut(s)	767, 1886, 1887, 1899, 2608, 2622, 2623, 2805
PspPPI	RGGWCCY	1 cut(s)	2608
PspXI	VCTCGAGB	1 cut(s)	2281
PstNI	CAGNNNCTG	2 cut(s)	1988, 2180
PsuI	RGATCY	2 cut(s)	1111, 1528
PvuII	CAGCTG	1 cut(s)	1367
RsaI	GTAC	8 cut(s)	946, 973, 1057, 1302, 1329, 1921, 2379, 2919
RsaNI	GTAC	8 cut(s)	945, 972, 1056, 1301, 1328, 1920, 2378, 2918
RseI	CAYNNNNRTG	1 cut(s)	2919
SacI	GAGCTC	4 cut(s)	34, 1290, 1668, 2727
SatI	GCNGC	5 cut(s)	448, 899, 1407, 2105, 2115
Sau3AI	GATC	7 cut(s)	845, 1111, 1217, 1528, 1584, 1717, 1951
Sau96I	GGNCC	8 cut(s)	767, 1886, 1887, 1899, 2608, 2622, 2623, 2805
ScaI	AGTACT	1 cut(s)	1057
SchI	GAGTC	5 cut(s)	293, 539, 1109, 1955, 2160
ScrFI	CCNGG	3 cut(s)	1135, 1298, 2746
SduI	GDGCHC	6 cut(s)	34, 1290, 1668, 1890, 2626, 2727
SexAI	ACCWGGT	1 cut(s)	1296
SfaNI	GCATC	7 cut(s)	1018, 1430, 1750, 1808, 2584, 2656, 2899
SfcI	CTRYAG	1 cut(s)	1989
SfoI	GGCGCC	1 cut(s)	244
Sfr274I	CTCGAG	2 cut(s)	1170, 2281
SinI	GGWCC	3 cut(s)	767, 2608, 2805
SlaI	CTCGAG	2 cut(s)	1170, 2281
SmiMI	CAYNNNNRTG	1 cut(s)	2919
SmlI	CTYRAG	3 cut(s)	1170, 2281, 2680
SmoI	CTYRAG	3 cut(s)	1170, 2281, 2680
SpeI	ACTAGT	1 cut(s)	1928
SphI	GCATGC	1 cut(s)	380
SseBI	AGGCCT	1 cut(s)	2957
SsiI	CCGC	4 cut(s)	733, 1281, 2104, 2627
SspDI	GGCGCC	1 cut(s)	242
SspI	AATATT	1 cut(s)	2197
SstI	GAGCTC	4 cut(s)	34, 1290, 1668, 2727
StuI	AGGCCT	1 cut(s)	2957
StyD4I	CCNGG	3 cut(s)	1133, 1296, 2744
StyI	CCWWGG	3 cut(s)	870, 1779, 1895
TaaI	ACNGT	8 cut(s)	426, 908, 1060, 1305, 1813, 2063, 2363, 2417
TaiI	ACGT	4 cut(s)	973, 1022, 2892, 2923
TaqI	TCGA	5 cut(s)	561, 1171, 1216, 1904, 2282
TatI	WGTACW	3 cut(s)	944, 1055, 2377
TauI	GCSGC	1 cut(s)	2107
TfiI	GAWTC	9 cut(s)	62, 272, 822, 998, 1357, 1376, 2329, 2390, 2741
TseFI	GTSAC	6 cut(s)	392, 589, 1079, 1116, 2701, 2885
TseI	GCWGC	4 cut(s)	447, 898, 1406, 2114
Tsp45I	GTSAC	6 cut(s)	392, 589, 1079, 1116, 2701, 2885
TspGWI	ACGGA	2 cut(s)	1482, 1766
Van91I	CCANNNNNTGG	1 cut(s)	2089
Vha464I	CTTAAG	1 cut(s)	2680
VpaK11BI	GGWCC	3 cut(s)	767, 2608, 2805
VspI	ATTAAT	2 cut(s)	521, 1542
XagI	CCTNNNNNAGG	1 cut(s)	2936
XapI	RAATTY	5 cut(s)	748, 1692, 1975, 2512, 2566
XbaI	TCTAGA	1 cut(s)	2425
XceI	RCATGY	4 cut(s)	380, 2460, 2579, 2918
XcmI	CCANNNNNNNNNTGG	2 cut(s)	429, 2669
XhoI	CTCGAG	2 cut(s)	1170, 2281
XmnI	GAANNNNTTC	1 cut(s)	918
ZrmI	AGTACT	1 cut(s)	1057

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.