Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003748.1

Orthogroup ID

OG0008431

Physical Location & Seq

Genomic Coordinates Reverse (-)

100136 .. 105558

Gene Structure 5423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003748.1_g000031.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3009 bp

atggagaagaaggttaagaagaaggctagagcttctcaaaaggataagtgggttccatctgattcccggaagaaggttgccgaaccaagcaacccaagggttaaggatgatggagtttcagttgcaaaagtgagaaaagcttgtcctcacattgacaaaggtgttgatttgaataaattgcaagctaaaattgggtcttcagcagttgttaggtgtgaagattgtagggaaggtgccattgataggaaggggggtaaaggaaagggcaaacatggtaagaagaaaggaggtgctgattctaaatccgagtcaaaatctgtatggctttgtttagaatgcggtcattttgcttgtggtggggttggacttccaataacccctctatgccacgcagttcggcatgcaagtcaaactcgtcacgcattggtggtgcagtttgaaaacccacagttgcgatggtgcttccagtgcagcacacttattaccattgataagacgggggagaatggtgaagaaaaagatgtcttttctgatgttgtgaaattaattaagggtcattcgtcggaggactcatcaggtgatgtcgaggatgtatggtttggtagtggcagtgtgacaagcgaaatcaaatcagctagcaatacatcaagccttttggatggaagaggaggttatgcagtaagaggcttagttaatcttggtaacacttgcttcttcaattctattttacagaaccttctagctattgataggttgcgggtttacttcttaaattttgaagcacctgccggaccgcttactatttccttgaagaaactctttactgaaacaaaaccagaggcaggattcaagaatgtgataaaccctagatcgtttttcggttgcgtctgttccaaggctccccagtttaggggctatcagcagcaagacagtcatgaattgcttcgttgcttactggatggattgtgtactgaggagttgagtatgaggaaacgtacaagttcttcccagcaaaatgaggattcatcaaatccagttcctacgtttgttgatgctgtatttgggggacaggtatcaagtactgtttgctgtgttgaatgtggtcactcatcaactatctatgagtcattcttagatctgtcactgccagtcccaaccaggaaatccccacctaaggcttccctaccaagctctcgagcaaagaagacgaagcttccacccaagaggagtggaaaggttcgatctaaaattaacaaagacaagaactctgcaacatctccaagtgtggcaaccacatcaaccagcggtgagctctctaaccaggtacagtcaagttctactgagctaaatgtacctgaacaaaacggcttggttatgaagaatctatcagctgtccaagaatctcaacatgaacaagtctttgagaatgcagcaggagaacaagcatcagctttgttagatgactttacatggatggattatcttgatgacggaaatatattagatgactatgatttgacttccgaaaatgcaattgtttcaattgttcaagatcctaaaagtattaatacatctcttaatgatgtctcacaacagagtggctctgagatcagtgataaggatttcaaggttactggagaacagaatgtaaaaccaagcttttcttcagtgaatgctgaggaggacgagctcccattgcaggttcaaagttctgaaattttattgcttccatataaagaagatcagagttctgaaatgttgttgcatccacataaggaaggatgttccatcactggggaaatcatgggaggagaaggagaggcatcgtcatcaactgtgggttgtggacaagatgattttgatggctttggagacttattcaatgagcctgagcctgaggttgttgctgggcccagtccaaggccctcgactggtgaggaaggtacagcaactagtcttgtagctagtgagtctgatcctgatgaagttgatgatacaaattctccagtctctgtagagagttgtttagctcatttcataaagcctgagcttcttgccaatgaaaatgcttggcattgtgagaactgttccaaatctctgaagcaccaaaggttggaagcaaagaagcggcaaaaagctgcaactaaatgtttgataaatggatgtgagactagagtccaaagtgtttctctgagttcagacactgctgatatcagtaatattagtaatggaaatatcaaaagcaatactggttgcaaccaatttggtgaaaacttggttttggatgatgggaagatgaattgctcgagcgaaaattgcacattagttgagaatgctctatcagataagatgattcctgttgtttgtcaacaacaagaaggaaacagtgagatgaaagatgtacttccaacagaatcaaatactttggattgcaataacagtgatactctagaaagtattagcagtcaagccattgatacatgtgctgatgtgcctagttgtgctggatgtgcctctgaaaatgctccacagacaaattctaagttattagatgattgtgaattagaagcaagtgaagatgaggaaataaattccaaacatgtaaaggtgaagagggatgcgacaaaacgggtcctaattgacagggccccgcctattttgaccattcatctcaaaaggtttagccaagatgctcgtggtcgcttaagtaaattgaacggccatgtcactttcagagaaaaaattgagctcagaccatatatggattccaggtgcagagaaaaggagaggtatgaataccacctaatcggggttgtggagcattctgggaccatgcgaggaggccattatgttgcatatgtgagaggtggtgaaaggagcagaggaaaagctgagaaggagaagattggtcacgtgtggtattatgctagtgatgcacatgtacgtgaggtttccctagatgaggtgcttcgctgtgaggcctatatcttattctatgaaaaaacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009507 GO:0009536 GO:0009987 GO:0019538 GO:0019941 GO:0030163 GO:0032991 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UCH zf-UBP

Protein Analysis

1002

Amino Acids

109.46

Weight (kDa)

5.54

Isoelectric Point (pI)

47.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008431)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04860
fragaria_vesca	FvH4_4g16490 FvH4_4g16490
malus_domestica	MD04G1009400.v1.1 MD13G1284700.v1.1
prunus_persica	Prupe.1G008700_v2.0.a1 Prupe.1G008700_v2.0.a1 Prupe.1G008700_v2.0.a1 Prupe.1G008700_v2.0.a1
pyrus_communis	pycom04g00720 pycom420g01370
rosa_chinensis	RchiOBHm_Chr4g0415171
rosa_laevigata	RLG00000008090
rosa_multiflora	Rmu_sc0003748.1_g000031 Rmu_sc0033472.1_g000001
rosa_roxburghii	Rroxscaffold_5G00359000
rosa_rugosa	Rorug04G0132500 Rorug04G0132500
rosa_samantha	Rh4AG192800 Rh4BG190900 Rh4CG203600 Rh4DG190700
rosa_wichuraiana	Rw4G016390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	793
Acc36I	ACCTGC	2 cut(s)	793, 1690
AccB1I	GGYRCC	1 cut(s)	233
AccB7I	CCANNNNNTGG	1 cut(s)	2113
AciI	CCGC	6 cut(s)	339, 757, 794, 1305, 2128, 2651
AclWI	GGATC	2 cut(s)	1547, 1970
AcoI	YGGCCR	1 cut(s)	2719
AcsI	RAATTY	5 cut(s)	772, 1716, 1999, 2536, 2590
AcuI	CTGAAG	3 cut(s)	183, 1650, 2120
AcvI	CACGTG	1 cut(s)	2914
AfaI	GTAC	8 cut(s)	970, 997, 1081, 1326, 1353, 1945, 2403, 2943
AflII	CTTAAG	1 cut(s)	2704
AflIII	ACRYGT	4 cut(s)	2480, 2599, 2913, 2938
AhlI	ACTAGT	1 cut(s)	1952
AjnI	CCWGG	3 cut(s)	1157, 1320, 2768
AjuI	GAANNNNNNNTTGG	2 cut(s)	1648, 1680
Alw21I	GWGCWC	3 cut(s)	1314, 1692, 2751
Alw26I	GTCTC	4 cut(s)	1591, 1866, 2014, 2162
AlwI	GGATC	2 cut(s)	1547, 1970
AlwNI	CAGNNNCTG	2 cut(s)	2012, 2204
Ama87I	CYCGRG	2 cut(s)	1194, 2305
AoxI	GGCC	6 cut(s)	1910, 1922, 2646, 2719, 2842, 2979
ApaI	GGGCCC	2 cut(s)	1914, 2650
ApeKI	GCWGC	4 cut(s)	471, 922, 1430, 2138
ApoI	RAATTY	5 cut(s)	772, 1716, 1999, 2536, 2590
AseI	ATTAAT	2 cut(s)	545, 1566
Asp700I	GAANNNNTTC	1 cut(s)	942
AspS9I	GGNCC	8 cut(s)	791, 1910, 1911, 1923, 2632, 2646, 2647, 2829
AsuC2I	CCSGG	1 cut(s)	67
AsuHPI	GGTGA	7 cut(s)	521, 590, 1319, 1946, 2279, 2620, 2882
AsuNHI	GCTAGC	1 cut(s)	635
AvaI	CYCGRG	2 cut(s)	1194, 2305
AvaII	GGWCC	3 cut(s)	791, 2632, 2829
AxyI	CCTNAGG	2 cut(s)	1173, 1896
BaeGI	GKGCMC	2 cut(s)	1914, 2650
BanI	GGYRCC	1 cut(s)	233
BanII	GRGCYC	5 cut(s)	1314, 1692, 1914, 2650, 2751
BarI	GAAGNNNNNNTAC	2 cut(s)	988, 1020
BauI	CACGAG	1 cut(s)	2694
BbrPI	CACGTG	1 cut(s)	2914
BbsI	GAAGAC	2 cut(s)	189, 1211
Bbv12I	GWGCWC	3 cut(s)	1314, 1692, 2751
BbvCI	CCTCAGC	1 cut(s)	1677
BbvI	GCAGC	4 cut(s)	483, 934, 1442, 2125
BccI	CCATC	9 cut(s)	64, 104, 450, 653, 953, 1468, 1796, 1856, 2282
BceAI	ACGGC	2 cut(s)	1381, 2734
BciT130I	CCWGG	3 cut(s)	1159, 1322, 2770
BcnI	CCSGG	1 cut(s)	67
BcoDI	GTCTC	4 cut(s)	1591, 1866, 2014, 2162
BcuI	ACTAGT	1 cut(s)	1952
BfmI	CTRYAG	1 cut(s)	2013
BfrI	CTTAAG	1 cut(s)	2704
BfuAI	ACCTGC	2 cut(s)	793, 1690
BglII	AGATCT	1 cut(s)	1135
BisI	GCNGC	5 cut(s)	472, 923, 1431, 2129, 2139
BlsI	GCNGC	5 cut(s)	473, 924, 1432, 2130, 2140
BmcAI	AGTACT	1 cut(s)	1081
Bme1390I	CCNGG	4 cut(s)	67, 1159, 1322, 2770
Bme18I	GGWCC	3 cut(s)	791, 2632, 2829
BmeT110I	CYCGRG	2 cut(s)	1194, 2305
BmgT120I	GGNCC	8 cut(s)	791, 1910, 1911, 1923, 2632, 2646, 2647, 2829
BmiI	GGNNCC	8 cut(s)	54, 235, 900, 1912, 2633, 2648, 2649, 2830
BmrFI	CCNGG	4 cut(s)	67, 1159, 1322, 2770
BmrI	ACTGGG	3 cut(s)	898, 1803, 1908
BmsI	GCATC	7 cut(s)	1042, 1454, 1774, 1832, 2608, 2680, 2923
BmtI	GCTAGC	1 cut(s)	639
BmuI	ACTGGG	3 cut(s)	898, 1803, 1908
BoxI	GACNNNNGTC	1 cut(s)	2174
BpiI	GAAGAC	2 cut(s)	189, 1211
BpmI	CTGGAG	2 cut(s)	1656, 1989
Bpu10I	CCTNAGC	3 cut(s)	1677, 1890, 2046
BpuMI	CCSGG	1 cut(s)	67
BsaAI	YACGTR	2 cut(s)	2914, 2945
BsaJI	CCNNGG	3 cut(s)	95, 894, 1919
BsaXI	ACNNNNNCTCC	4 cut(s)	105, 135, 1987, 2017
Bse21I	CCTNAGG	2 cut(s)	1173, 1896
Bse3DI	GCAATG	1 cut(s)	1694
BseBI	CCWGG	3 cut(s)	1159, 1322, 2770
BseDI	CCNNGG	3 cut(s)	95, 894, 1919
BseMI	GCAATG	1 cut(s)	1694
BseRI	GAGGAG	6 cut(s)	681, 989, 1240, 1694, 1824, 2853
BseSI	GKGCMC	2 cut(s)	1914, 2650
BseXI	GCAGC	4 cut(s)	483, 934, 1442, 2125
BseYI	CCCAGC	2 cut(s)	1008, 1907
BsgI	GTGCAG	3 cut(s)	452, 490, 2794
BshFI	GGCC	6 cut(s)	1912, 1924, 2648, 2721, 2844, 2981
BshNI	GGYRCC	1 cut(s)	233
BsiHKAI	GWGCWC	3 cut(s)	1314, 1692, 2751
BsiHKCI	CYCGRG	2 cut(s)	1194, 2305
BsiSI	CCGG	2 cut(s)	67, 789
BslFI	GGGAC	3 cut(s)	1080, 1136, 2842
BsmAI	GTCTC	4 cut(s)	1591, 1866, 2014, 2162
BsmFI	GGGAC	3 cut(s)	1080, 1136, 2842
BsmI	GAATGC	5 cut(s)	341, 1432, 1678, 2338, 2821
BsnI	GGCC	6 cut(s)	1912, 1924, 2648, 2721, 2844, 2981
BsoBI	CYCGRG	2 cut(s)	1194, 2305
Bsp120I	GGGCCC	2 cut(s)	1910, 2646
Bsp1286I	GDGCHC	5 cut(s)	1314, 1692, 1914, 2650, 2751
Bsp143I	GATC	7 cut(s)	869, 1135, 1241, 1552, 1608, 1741, 1975
BspACI	CCGC	6 cut(s)	339, 757, 794, 1305, 2128, 2651
BspANI	GGCC	6 cut(s)	1912, 1924, 2648, 2721, 2844, 2981
BspHI	TCATGA	1 cut(s)	934
BspLI	GGNNCC	8 cut(s)	54, 235, 900, 1912, 2633, 2648, 2649, 2830
BspMI	ACCTGC	2 cut(s)	793, 1690
BspOI	GCTAGC	1 cut(s)	639
BspPI	GGATC	2 cut(s)	1547, 1970
BspT107I	GGYRCC	1 cut(s)	233
BspTI	CTTAAG	1 cut(s)	2704
BsrDI	GCAATG	1 cut(s)	1694
BssECI	CCNNGG	3 cut(s)	95, 894, 1919
BssMI	GATC	7 cut(s)	869, 1135, 1241, 1552, 1608, 1741, 1975
BssSI	CACGAG	1 cut(s)	2694
BssT1I	CCWWGG	3 cut(s)	95, 894, 1919
Bst2BI	CACGAG	1 cut(s)	2694
Bst2UI	CCWGG	3 cut(s)	1159, 1322, 2770
Bst4CI	ACNGT	8 cut(s)	450, 932, 1084, 1329, 1837, 2087, 2387, 2441
Bst6I	CTCTTC	2 cut(s)	658, 2606
BstAFI	CTTAAG	1 cut(s)	2704
BstBAI	YACGTR	2 cut(s)	2914, 2945
BstC8I	GCNNGC	3 cut(s)	183, 402, 637
BstENI	CCTNNNNNAGG	1 cut(s)	2960
BstKTI	GATC	7 cut(s)	872, 1138, 1244, 1555, 1611, 1744, 1978
BstMAI	GTCTC	4 cut(s)	1591, 1866, 2014, 2162
BstMBI	GATC	7 cut(s)	869, 1135, 1241, 1552, 1608, 1741, 1975
BstMWI	GCNNNNNNNGC	5 cut(s)	468, 1696, 2316, 2510, 2933
BstNI	CCWGG	3 cut(s)	1159, 1322, 2770
BstNSI	RCATGY	4 cut(s)	404, 2484, 2603, 2942
BstPAI	GACNNNNGTC	1 cut(s)	2174
BstSCI	CCNGG	4 cut(s)	65, 1157, 1320, 2768
BstSFI	CTRYAG	1 cut(s)	2013
BstSLI	GKGCMC	2 cut(s)	1914, 2650
BstV1I	GCAGC	4 cut(s)	483, 934, 1442, 2125
BstV2I	GAAGAC	2 cut(s)	189, 1211
BstX2I	RGATCY	2 cut(s)	1135, 1552
BstYI	RGATCY	2 cut(s)	1135, 1552
Bsu36I	CCTNAGG	2 cut(s)	1173, 1896
BsuRI	GGCC	6 cut(s)	1912, 1924, 2648, 2721, 2844, 2981
BtgZI	GCGATG	1 cut(s)	469
BtsI	GCAGTG	3 cut(s)	616, 1142, 2202
BtsIMutI	CAGTG	9 cut(s)	473, 616, 1142, 1618, 1674, 1791, 2202, 2392, 2446
BveI	ACCTGC	2 cut(s)	793, 1690
Cac8I	GCNNGC	3 cut(s)	183, 402, 637
CaiI	CAGNNNCTG	2 cut(s)	2012, 2204
CciI	TCATGA	1 cut(s)	934
Cfr13I	GGNCC	8 cut(s)	791, 1910, 1911, 1923, 2632, 2646, 2647, 2829
CpoI	CGGWCCG	1 cut(s)	791
CseI	GACGC	1 cut(s)	874
CsiI	ACCWGGT	1 cut(s)	1320
Csp6I	GTAC	8 cut(s)	969, 996, 1080, 1325, 1352, 1944, 2402, 2942
CspCI	CAANNNNNGTGG	2 cut(s)	1210, 1245
CspI	CGGWCCG	1 cut(s)	791
CviQI	GTAC	8 cut(s)	969, 996, 1080, 1325, 1352, 1944, 2402, 2942
DpnI	GATC	7 cut(s)	871, 1137, 1243, 1554, 1610, 1743, 1977
DpnII	GATC	7 cut(s)	869, 1135, 1241, 1552, 1608, 1741, 1975
EaeI	YGGCCR	1 cut(s)	2719
Eam1104I	CTCTTC	2 cut(s)	658, 2606
EarI	CTCTTC	2 cut(s)	658, 2606
Ecl136II	GAGCTC	3 cut(s)	1312, 1690, 2749
Eco130I	CCWWGG	3 cut(s)	95, 894, 1919
Eco147I	AGGCCT	1 cut(s)	2981
Eco24I	GRGCYC	5 cut(s)	1314, 1692, 1914, 2650, 2751
Eco32I	GATATC	1 cut(s)	2212
Eco47I	GGWCC	3 cut(s)	791, 2632, 2829
Eco53kI	GAGCTC	3 cut(s)	1312, 1690, 2749
Eco57I	CTGAAG	3 cut(s)	183, 1650, 2120
Eco72I	CACGTG	1 cut(s)	2914
Eco81I	CCTNAGG	2 cut(s)	1173, 1896
Eco88I	CYCGRG	2 cut(s)	1194, 2305
EcoICRI	GAGCTC	3 cut(s)	1312, 1690, 2749
EcoNI	CCTNNNNNAGG	1 cut(s)	2960
EcoO109I	RGGNCCY	4 cut(s)	1923, 2632, 2646, 2647
EcoRII	CCWGG	3 cut(s)	1157, 1320, 2768
EcoRV	GATATC	1 cut(s)	2212
EcoT14I	CCWWGG	3 cut(s)	95, 894, 1919
EcoT38I	GRGCYC	5 cut(s)	1314, 1692, 1914, 2650, 2751
ErhI	CCWWGG	3 cut(s)	95, 894, 1919
FalI	AAGNNNNNCTT	6 cut(s)	803, 835, 1648, 1680, 2388, 2420
FaqI	GGGAC	3 cut(s)	1080, 1136, 2842
FauI	CCCGC	2 cut(s)	750, 2658
FauNDI	CATATG	1 cut(s)	2857
Fnu4HI	GCNGC	5 cut(s)	472, 923, 1431, 2129, 2139
FriOI	GRGCYC	5 cut(s)	1314, 1692, 1914, 2650, 2751
Fsp4HI	GCNGC	5 cut(s)	472, 923, 1431, 2129, 2139
GluI	GCNGC	5 cut(s)	472, 923, 1431, 2129, 2139
GsaI	CCCAGC	2 cut(s)	1012, 1911
GsuI	CTGGAG	2 cut(s)	1656, 1989
HaeIII	GGCC	6 cut(s)	1912, 1924, 2648, 2721, 2844, 2981
HapII	CCGG	2 cut(s)	67, 789
HgaI	GACGC	1 cut(s)	874
HincII	GTYRAC	1 cut(s)	2369
HindII	GTYRAC	1 cut(s)	2369
HindIII	AAGCTT	3 cut(s)	138, 1211, 1657
HpaII	CCGG	2 cut(s)	67, 789
HphI	GGTGA	7 cut(s)	521, 590, 1319, 1946, 2279, 2620, 2882
Hpy166II	GTNNAC	4 cut(s)	763, 969, 1847, 2369
Hpy188III	TCNNGA	7 cut(s)	850, 935, 1194, 1484, 1550, 1979, 2450
Hpy8I	GTNNAC	4 cut(s)	763, 969, 1847, 2369
Hpy99I	CGWCG	1 cut(s)	565
HpyCH4III	ACNGT	8 cut(s)	450, 932, 1084, 1329, 1837, 2087, 2387, 2441
HpyCH4IV	ACGT	4 cut(s)	994, 1043, 2913, 2944
HpyF10VI	GCNNNNNNNGC	5 cut(s)	468, 1696, 2316, 2510, 2933
HpySE526I	ACGT	4 cut(s)	994, 1043, 2913, 2944
Kzo9I	GATC	7 cut(s)	869, 1135, 1241, 1552, 1608, 1741, 1975
LmnI	GCTCC	5 cut(s)	904, 1695, 2530, 2818, 2877
Lsp1109I	GCAGC	4 cut(s)	483, 934, 1442, 2125
LweI	GCATC	7 cut(s)	1042, 1454, 1774, 1832, 2608, 2680, 2923
MabI	ACCWGGT	1 cut(s)	1320
MaeII	ACGT	4 cut(s)	994, 1043, 2913, 2944
MaeIII	GTNAC	8 cut(s)	416, 613, 701, 1103, 1140, 1630, 2725, 2909
MalI	GATC	7 cut(s)	871, 1137, 1243, 1554, 1610, 1743, 1977
MboI	GATC	7 cut(s)	869, 1135, 1241, 1552, 1608, 1741, 1975
MfeI	CAATTG	2 cut(s)	1533, 1542
MflI	RGATCY	2 cut(s)	1135, 1552
MhlI	GDGCHC	5 cut(s)	1314, 1692, 1914, 2650, 2751
MlyI	GAGTC	5 cut(s)	317, 563, 1133, 1979, 2184
MmeI	TCCRAC	4 cut(s)	343, 543, 2094, 2432
MroXI	GAANNNNTTC	1 cut(s)	942
MslI	CAYNNNNRTG	1 cut(s)	2943
MspA1I	CMGCKG	2 cut(s)	1305, 1391
MspCI	CTTAAG	1 cut(s)	2704
MspI	CCGG	2 cut(s)	67, 789
MspR9I	CCNGG	4 cut(s)	67, 1159, 1322, 2770
MunI	CAATTG	2 cut(s)	1533, 1542
Mva1269I	GAATGC	5 cut(s)	341, 1432, 1678, 2338, 2821
MvaI	CCWGG	3 cut(s)	1159, 1322, 2770
MwoI	GCNNNNNNNGC	5 cut(s)	468, 1696, 2316, 2510, 2933
NciI	CCSGG	1 cut(s)	67
NdeI	CATATG	1 cut(s)	2857
NdeII	GATC	7 cut(s)	869, 1135, 1241, 1552, 1608, 1741, 1975
NheI	GCTAGC	1 cut(s)	635
NlaIV	GGNNCC	8 cut(s)	54, 235, 900, 1912, 2633, 2648, 2649, 2830
NmuCI	GTSAC	6 cut(s)	416, 613, 1103, 1140, 2725, 2909
NspI	RCATGY	4 cut(s)	404, 2484, 2603, 2942
PacI	TTAATTAA	1 cut(s)	549
PaeI	GCATGC	1 cut(s)	404
PaeR7I	CTCGAG	2 cut(s)	1194, 2305
PagI	TCATGA	1 cut(s)	934
PaqCI	CACCTGC	1 cut(s)	793
PceI	AGGCCT	1 cut(s)	2981
PciI	ACATGT	3 cut(s)	2480, 2599, 2938
PctI	GAATGC	5 cut(s)	341, 1432, 1678, 2338, 2821
PdmI	GAANNNNTTC	1 cut(s)	942
PfeI	GAWTC	9 cut(s)	62, 296, 846, 1022, 1381, 1400, 2353, 2414, 2765
PflMI	CCANNNNNTGG	1 cut(s)	2113
PfoI	TCCNGGA	1 cut(s)	65
PkrI	GCNGC	5 cut(s)	473, 924, 1432, 2130, 2140
PleI	GAGTC	5 cut(s)	316, 563, 1132, 1978, 2183
PmaCI	CACGTG	1 cut(s)	2914
PmlI	CACGTG	1 cut(s)	2914
PpsI	GAGTC	5 cut(s)	316, 563, 1132, 1978, 2183
Ppu21I	YACGTR	2 cut(s)	2914, 2945
PpuMI	RGGWCCY	1 cut(s)	2632
PscI	ACATGT	3 cut(s)	2480, 2599, 2938
PshAI	GACNNNNGTC	1 cut(s)	2174
PshBI	ATTAAT	2 cut(s)	545, 1566
Psp124BI	GAGCTC	3 cut(s)	1314, 1692, 2751
Psp5II	RGGWCCY	1 cut(s)	2632
Psp6I	CCWGG	3 cut(s)	1157, 1320, 2768
PspCI	CACGTG	1 cut(s)	2914
PspFI	CCCAGC	2 cut(s)	1008, 1907
PspGI	CCWGG	3 cut(s)	1157, 1320, 2768
PspN4I	GGNNCC	8 cut(s)	54, 235, 900, 1912, 2633, 2648, 2649, 2830
PspOMI	GGGCCC	2 cut(s)	1910, 2646
PspPI	GGNCC	8 cut(s)	791, 1910, 1911, 1923, 2632, 2646, 2647, 2829
PspPPI	RGGWCCY	1 cut(s)	2632
PspXI	VCTCGAGB	1 cut(s)	2305
PstNI	CAGNNNCTG	2 cut(s)	2012, 2204
PsuI	RGATCY	2 cut(s)	1135, 1552
PvuII	CAGCTG	1 cut(s)	1391
RsaI	GTAC	8 cut(s)	970, 997, 1081, 1326, 1353, 1945, 2403, 2943
RsaNI	GTAC	8 cut(s)	969, 996, 1080, 1325, 1352, 1944, 2402, 2942
RseI	CAYNNNNRTG	1 cut(s)	2943
Rsr2I	CGGWCCG	1 cut(s)	791
RsrII	CGGWCCG	1 cut(s)	791
SacI	GAGCTC	3 cut(s)	1314, 1692, 2751
SatI	GCNGC	5 cut(s)	472, 923, 1431, 2129, 2139
Sau3AI	GATC	7 cut(s)	869, 1135, 1241, 1552, 1608, 1741, 1975
Sau96I	GGNCC	8 cut(s)	791, 1910, 1911, 1923, 2632, 2646, 2647, 2829
ScaI	AGTACT	1 cut(s)	1081
SchI	GAGTC	5 cut(s)	317, 563, 1133, 1979, 2184
ScrFI	CCNGG	4 cut(s)	67, 1159, 1322, 2770
SduI	GDGCHC	5 cut(s)	1314, 1692, 1914, 2650, 2751
SexAI	ACCWGGT	1 cut(s)	1320
SfaNI	GCATC	7 cut(s)	1042, 1454, 1774, 1832, 2608, 2680, 2923
SfcI	CTRYAG	1 cut(s)	2013
Sfr274I	CTCGAG	2 cut(s)	1194, 2305
SinI	GGWCC	3 cut(s)	791, 2632, 2829
SlaI	CTCGAG	2 cut(s)	1194, 2305
SmiMI	CAYNNNNRTG	1 cut(s)	2943
SmlI	CTYRAG	3 cut(s)	1194, 2305, 2704
SmoI	CTYRAG	3 cut(s)	1194, 2305, 2704
SpeI	ACTAGT	1 cut(s)	1952
SphI	GCATGC	1 cut(s)	404
SseBI	AGGCCT	1 cut(s)	2981
SsiI	CCGC	6 cut(s)	339, 757, 794, 1305, 2128, 2651
SspI	AATATT	1 cut(s)	2221
SstI	GAGCTC	3 cut(s)	1314, 1692, 2751
StuI	AGGCCT	1 cut(s)	2981
StyD4I	CCNGG	4 cut(s)	65, 1157, 1320, 2768
StyI	CCWWGG	3 cut(s)	95, 894, 1919
TaaI	ACNGT	8 cut(s)	450, 932, 1084, 1329, 1837, 2087, 2387, 2441
TaiI	ACGT	4 cut(s)	997, 1046, 2916, 2947
TaqI	TCGA	5 cut(s)	585, 1195, 1240, 1928, 2306
TatI	WGTACW	3 cut(s)	968, 1079, 2401
TauI	GCSGC	1 cut(s)	2131
TfiI	GAWTC	9 cut(s)	62, 296, 846, 1022, 1381, 1400, 2353, 2414, 2765
TscAI	CASTG	9 cut(s)	473, 616, 1149, 1618, 1674, 1798, 2209, 2392, 2446
TseFI	GTSAC	6 cut(s)	416, 613, 1103, 1140, 2725, 2909
TseI	GCWGC	4 cut(s)	471, 922, 1430, 2138
Tsp45I	GTSAC	6 cut(s)	416, 613, 1103, 1140, 2725, 2909
TspGWI	ACGGA	1 cut(s)	1506
TspRI	CASTG	9 cut(s)	473, 616, 1149, 1618, 1674, 1798, 2209, 2392, 2446
Van91I	CCANNNNNTGG	1 cut(s)	2113
Vha464I	CTTAAG	1 cut(s)	2704
VpaK11BI	GGWCC	3 cut(s)	791, 2632, 2829
VspI	ATTAAT	2 cut(s)	545, 1566
XagI	CCTNNNNNAGG	1 cut(s)	2960
XapI	RAATTY	5 cut(s)	772, 1716, 1999, 2536, 2590
XbaI	TCTAGA	1 cut(s)	2449
XceI	RCATGY	4 cut(s)	404, 2484, 2603, 2942
XcmI	CCANNNNNNNNNTGG	2 cut(s)	453, 2693
XhoI	CTCGAG	2 cut(s)	1194, 2305
XmnI	GAANNNNTTC	1 cut(s)	942
ZrmI	AGTACT	1 cut(s)	1081

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.