RchiOBHm_Chr4g0426281

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0015753
Physical Location & Seq
Forward (+)
51817631 .. 51820075
2445 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39534

Sequence Viewer

Length: 453 bp
ATGGTGTCCAGTACGTCTGGTCCCCTACGACGTCGTTTCTGCGTTCTTCGCCGGAGCGGGAGCTTTGAATCGGCTCTGTGGATTTGGAGAGATTTGGTTGCGGCGACGCGTATTTCCGGGAGTTGCTTCGGGAGTTCCTCAGGTTTGGTTTCGTTTTTGAGCTTTTCATTTTTGAGCTCAAATTTTCTCTCTCTTCCAATCAGAAAGCTTGAATCGATTTTGATCGGAGCTTCTCTCTCCATTTTGATTACGATCCGGATCTTGTCGGACTTGAGCCACTCACCGCAATTATACCCGCCGGATGTCGACCACGGCGGGATTTTGTACACTGCGACCTCGCGCACCACTAGCAGCTTAAGAATCCTCGTCGTCGCAGCCGCCGCGATCCATCTCCTTCGTCACTATAAGCTCGATCTCCCCTCCGATCTCCTCTCCTCCAAACCCTCCGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

16.34

Weight (kDa)

10.02

Isoelectric Point (pI)

61.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 34
AccBSI CCGCTC 1 cut(s) 57
AccI GTMKAC 1 cut(s) 306
AccII CGCG 3 cut(s) 109, 340, 383
AccIII TCCGGA 1 cut(s) 255
AciI CCGC 7 cut(s) 57, 101, 284, 296, 315, 378, 381
AclWI GGATC 3 cut(s) 247, 266, 379
AcsI RAATTY 1 cut(s) 181
AcyI GRCGYC 1 cut(s) 31
AfaI GTAC 2 cut(s) 13, 326
AflII CTTAAG 1 cut(s) 355
AflIII ACRYGT 1 cut(s) 107
AgsI TTSAA 2 cut(s) 68, 212
AluBI AGCT 7 cut(s) 63, 162, 177, 208, 230, 354, 409
AluI AGCT 7 cut(s) 63, 162, 177, 208, 230, 354, 409
Alw21I GWGCWC 1 cut(s) 179
AlwI GGATC 3 cut(s) 247, 266, 379
Aor13HI TCCGGA 1 cut(s) 255
ApeKI GCWGC 2 cut(s) 351, 374
ApoI RAATTY 1 cut(s) 181
AspLEI GCGC 1 cut(s) 342
AspS9I GGNCC 1 cut(s) 20
AsuC2I CCSGG 1 cut(s) 118
AsuHPI GGTGA 1 cut(s) 273
AvaII GGWCC 1 cut(s) 20
AxyI CCTNAGG 1 cut(s) 139
BanII GRGCYC 1 cut(s) 179
Bbv12I GWGCWC 1 cut(s) 179
BbvI GCAGC 2 cut(s) 363, 386
BccI CCATC 1 cut(s) 396
BceAI ACGGC 1 cut(s) 328
BcnI CCSGG 1 cut(s) 118
BfaI CTAG 1 cut(s) 348
BfrI CTTAAG 1 cut(s) 355
BisI GCNGC 5 cut(s) 102, 352, 375, 378, 381
BlsI GCNGC 5 cut(s) 103, 353, 376, 379, 382
Bme1390I CCNGG 1 cut(s) 118
Bme18I GGWCC 1 cut(s) 20
BmgT120I GGNCC 1 cut(s) 20
BmiI GGNNCC 1 cut(s) 22
BmrFI CCNGG 1 cut(s) 118
BplI GAGNNNNNCTC 2 cut(s) 219, 251
BpuEI CTTGAG 1 cut(s) 292
BpuMI CCSGG 1 cut(s) 118
Bsa29I ATCGAT 1 cut(s) 215
BsaBI GATNNNNATC 3 cut(s) 221, 251, 257
BsaHI GRCGYC 1 cut(s) 31
BsaJI CCNNGG 1 cut(s) 310
BsaWI WCCGGW 1 cut(s) 255
Bse1I ACTGG 1 cut(s) 9
Bse21I CCTNAGG 1 cut(s) 139
Bse8I GATNNNNATC 3 cut(s) 221, 251, 257
BseAI TCCGGA 1 cut(s) 255
BseCI ATCGAT 1 cut(s) 215
BseDI CCNNGG 1 cut(s) 310
BseGI GGATG 1 cut(s) 307
BseJI GATNNNNATC 3 cut(s) 221, 251, 257
BseMII CTCAG 1 cut(s) 153
BseNI ACTGG 1 cut(s) 9
BseRI GAGGAG 2 cut(s) 419, 424
BseXI GCAGC 2 cut(s) 363, 386
Bsh1236I CGCG 3 cut(s) 109, 340, 383
BshVI ATCGAT 1 cut(s) 215
BsiHKAI GWGCWC 1 cut(s) 179
BsiSI CCGG 4 cut(s) 52, 117, 256, 299
BslFI GGGAC 1 cut(s) 6
BsmFI GGGAC 1 cut(s) 6
Bsp1286I GDGCHC 1 cut(s) 179
Bsp13I TCCGGA 1 cut(s) 255
Bsp1407I TGTACA 1 cut(s) 324
Bsp143I GATC 6 cut(s) 222, 252, 258, 384, 412, 424
BspACI CCGC 7 cut(s) 57, 101, 284, 296, 315, 378, 381
BspCNI CTCAG 1 cut(s) 152
BspDI ATCGAT 1 cut(s) 215
BspEI TCCGGA 1 cut(s) 255
BspFNI CGCG 3 cut(s) 109, 340, 383
BspLI GGNNCC 1 cut(s) 22
BspPI GGATC 3 cut(s) 247, 266, 379
BspTI CTTAAG 1 cut(s) 355
BsrBI CCGCTC 1 cut(s) 57
BsrGI TGTACA 1 cut(s) 324
BsrI ACTGG 1 cut(s) 9
BssECI CCNNGG 1 cut(s) 310
BssMI GATC 6 cut(s) 222, 252, 258, 384, 412, 424
BssNI GRCGYC 1 cut(s) 31
Bst6I CTCTTC 1 cut(s) 198
BstACI GRCGYC 1 cut(s) 31
BstAFI CTTAAG 1 cut(s) 355
BstAUI TGTACA 1 cut(s) 324
BstDEI CTNAG 1 cut(s) 139
BstDSI CCRYGG 1 cut(s) 310
BstF5I GGATG 1 cut(s) 307
BstFNI CGCG 3 cut(s) 109, 340, 383
BstHHI GCGC 1 cut(s) 342
BstKTI GATC 6 cut(s) 225, 255, 261, 387, 415, 427
BstMBI GATC 6 cut(s) 222, 252, 258, 384, 412, 424
BstMWI GCNNNNNNNGC 3 cut(s) 48, 348, 380
BstSCI CCNGG 1 cut(s) 116
BstUI CGCG 3 cut(s) 109, 340, 383
BstV1I GCAGC 2 cut(s) 363, 386
BstX2I RGATCY 1 cut(s) 258
BstYI RGATCY 1 cut(s) 258
Bsu15I ATCGAT 1 cut(s) 215
Bsu36I CCTNAGG 1 cut(s) 139
BsuTUI ATCGAT 1 cut(s) 215
BtgI CCRYGG 1 cut(s) 310
BtsCI GGATG 1 cut(s) 307
BtsI GCAGTG 1 cut(s) 327
BtsIMutI CAGTG 1 cut(s) 327
CfoI GCGC 1 cut(s) 342
Cfr13I GGNCC 1 cut(s) 20
ClaI ATCGAT 1 cut(s) 215
CseI GACGC 1 cut(s) 115
Csp6I GTAC 2 cut(s) 12, 325
CviQI GTAC 2 cut(s) 12, 325
DdeI CTNAG 1 cut(s) 139
DpnI GATC 6 cut(s) 224, 254, 260, 386, 414, 426
DpnII GATC 6 cut(s) 222, 252, 258, 384, 412, 424
Eam1104I CTCTTC 1 cut(s) 198
EarI CTCTTC 1 cut(s) 198
Ecl136II GAGCTC 1 cut(s) 177
Eco24I GRGCYC 1 cut(s) 179
Eco47I GGWCC 1 cut(s) 20
Eco53kI GAGCTC 1 cut(s) 177
Eco81I CCTNAGG 1 cut(s) 139
EcoICRI GAGCTC 1 cut(s) 177
EcoT38I GRGCYC 1 cut(s) 179
FaiI YATR 2 cut(s) 292, 405
FaqI GGGAC 1 cut(s) 6
FauI CCCGC 3 cut(s) 50, 303, 308
FblI GTMKAC 1 cut(s) 306
Fnu4HI GCNGC 5 cut(s) 102, 352, 375, 378, 381
FokI GGATG 1 cut(s) 314
FriOI GRGCYC 1 cut(s) 179
Fsp4HI GCNGC 5 cut(s) 102, 352, 375, 378, 381
FspBI CTAG 1 cut(s) 348
GlaI GCGC 1 cut(s) 341
GluI GCNGC 5 cut(s) 102, 352, 375, 378, 381
HapII CCGG 4 cut(s) 52, 117, 256, 299
HgaI GACGC 1 cut(s) 115
HhaI GCGC 1 cut(s) 342
Hin1I GRCGYC 1 cut(s) 31
Hin6I GCGC 1 cut(s) 340
HinP1I GCGC 1 cut(s) 340
HincII GTYRAC 1 cut(s) 307
HindII GTYRAC 1 cut(s) 307
HindIII AAGCTT 1 cut(s) 206
HinfI GANTC 3 cut(s) 68, 212, 360
HpaII CCGG 4 cut(s) 52, 117, 256, 299
HphI GGTGA 1 cut(s) 273
Hpy166II GTNNAC 2 cut(s) 307, 327
Hpy188I TCNGA 5 cut(s) 203, 227, 268, 424, 448
Hpy188III TCNNGA 2 cut(s) 130, 256
Hpy8I GTNNAC 2 cut(s) 307, 327
Hpy99I CGWCG 5 cut(s) 33, 36, 109, 371, 374
HpyAV CCTTC 1 cut(s) 404
HpyCH4IV ACGT 2 cut(s) 14, 31
HpyF10VI GCNNNNNNNGC 3 cut(s) 48, 348, 380
HpyF3I CTNAG 1 cut(s) 139
HpySE526I ACGT 2 cut(s) 14, 31
Hsp92I GRCGYC 1 cut(s) 31
HspAI GCGC 1 cut(s) 340
Kpn2I TCCGGA 1 cut(s) 255
Kzo9I GATC 6 cut(s) 222, 252, 258, 384, 412, 424
LmnI GCTCC 3 cut(s) 54, 60, 227
LpnPI CCDG 7 cut(s) 3, 22, 65, 126, 130, 269, 312
Lsp1109I GCAGC 2 cut(s) 363, 386
MaeI CTAG 1 cut(s) 348
MaeII ACGT 2 cut(s) 14, 31
MaeIII GTNAC 1 cut(s) 398
MalI GATC 6 cut(s) 224, 254, 260, 386, 414, 426
MbiI CCGCTC 1 cut(s) 57
MboI GATC 6 cut(s) 222, 252, 258, 384, 412, 424
MboII GAAGA 2 cut(s) 38, 185
MflI RGATCY 1 cut(s) 258
MhlI GDGCHC 1 cut(s) 179
MluCI AATT 2 cut(s) 181, 287
MluI ACGCGT 1 cut(s) 107
MmeI TCCRAC 1 cut(s) 246
MnlI CCTC 6 cut(s) 148, 346, 374, 430, 440, 445
MroI TCCGGA 1 cut(s) 255
MseI TTAA 1 cut(s) 356
MspCI CTTAAG 1 cut(s) 355
MspI CCGG 4 cut(s) 52, 117, 256, 299
MspR9I CCNGG 1 cut(s) 118
MvnI CGCG 3 cut(s) 109, 340, 383
MwoI GCNNNNNNNGC 3 cut(s) 48, 348, 380
NciI CCSGG 1 cut(s) 118
NdeII GATC 6 cut(s) 222, 252, 258, 384, 412, 424
NlaIV GGNNCC 1 cut(s) 22
NmuCI GTSAC 1 cut(s) 398
PfeI GAWTC 3 cut(s) 68, 212, 360
PfoI TCCNGGA 1 cut(s) 116
PkrI GCNGC 5 cut(s) 103, 353, 376, 379, 382
Psp124BI GAGCTC 1 cut(s) 179
PspN4I GGNNCC 1 cut(s) 22
PspPI GGNCC 1 cut(s) 20
PsuI RGATCY 1 cut(s) 258
RsaI GTAC 2 cut(s) 13, 326
RsaNI GTAC 2 cut(s) 12, 325
SacI GAGCTC 1 cut(s) 179
SalI GTCGAC 1 cut(s) 305
SaqAI TTAA 1 cut(s) 356
SatI GCNGC 5 cut(s) 102, 352, 375, 378, 381
Sau3AI GATC 6 cut(s) 222, 252, 258, 384, 412, 424
Sau96I GGNCC 1 cut(s) 20
ScrFI CCNGG 1 cut(s) 118
SduI GDGCHC 1 cut(s) 179
SinI GGWCC 1 cut(s) 20
SmlI CTYRAG 2 cut(s) 271, 355
SmoI CTYRAG 2 cut(s) 271, 355
Sse9I AATT 2 cut(s) 181, 287
SsiI CCGC 7 cut(s) 57, 101, 284, 296, 315, 378, 381
SspMI CTAG 1 cut(s) 348
SstI GAGCTC 1 cut(s) 179
StyD4I CCNGG 1 cut(s) 116
TaiI ACGT 2 cut(s) 17, 34
TaqI TCGA 3 cut(s) 215, 306, 411
TasI AATT 2 cut(s) 181, 287
TatI WGTACW 1 cut(s) 324
TauI GCSGC 3 cut(s) 104, 380, 383
TfiI GAWTC 3 cut(s) 68, 212, 360
Tru1I TTAA 1 cut(s) 356
Tru9I TTAA 1 cut(s) 356
TscAI CASTG 1 cut(s) 334
TseFI GTSAC 1 cut(s) 398
TseI GCWGC 2 cut(s) 351, 374
Tsp45I GTSAC 1 cut(s) 398
TspDTI ATGAA 1 cut(s) 156
TspRI CASTG 1 cut(s) 334
Vha464I CTTAAG 1 cut(s) 355
VpaK11BI GGWCC 1 cut(s) 20
XapI RAATTY 1 cut(s) 181
XmiI GTMKAC 1 cut(s) 306
XspI CTAG 1 cut(s) 348
ZraI GACGTC 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.