Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0015753

Physical Location & Seq

Genomic Coordinates Reverse (-)

23268395 .. 23269063

Gene Structure 669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0140800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGATGAGCTACACCAAGCCTCTTCACAAGATTGATCAGTCTATCCCAGGGGGCAATATGGTTATTTCCACAGTATTTGGGAAAAAGCAAAGCCAGAACAAGTACATTGTCTCATTCAGAAATACAACATCTACTCCACTAAGGGTCAAATCAAGAAGGCTCAGAAACAGCCCCGGGAACAATGCACTCAAGATCACAGTTCAATATGTGAATGGCATGCTTAAAGCAAAAGTTCCTGAAGCAGACATACTTACCGATCACGAAAGGGATGTTTTTCAGGAAGAACAGATGATGGAAAAGCCATCACGTGTCTCGGTCCTTCAAAGCCTAGGGACGAATGATCCACCCCGCGTCCCAATCTTTCAACGCTTGGGAACTCAAACGCAACCTCGTGTCTCAGCTTTCCAGCATTTGGGCAACACTTCTTCATCATCGTCCAACAAGTCACAAGCAAGCAAGAAATGGAAGGTTAAACGACACATTAAGGGTGATCTTCAAAAGACAGTGGGTTCTAAGCCAGATAAAAATATGGAAGAATCAGTATCAGTGAACTGTGTTTCGTTTGAAGAGGAACCAGACCAAGATCAGGCTCCAGAATTCATTGACACCACCCAGCCTGCTCCCCCACAAATGGAAGATGGAGGACAAGCAACCATTGATGACCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004738 GO:0004739 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008270 GO:0008610 GO:0009058 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009856 GO:0009941 GO:0009987 GO:0010240 GO:0016053 GO:0016491 GO:0016624 GO:0016903 GO:0019752 GO:0022414 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032787 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045254 GO:0046394 GO:0046872 GO:0046914 GO:0048856 GO:0048868 GO:0051704 GO:0055114 GO:0071704 GO:0072330 GO:1901576 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00010 ko00020 ko00620 ko01100 ko01110 ko01120 ko01130 ko01200 ko04066 ko04922 ko05230 map00010 map00020 map00620 map01100 map01110 map01120 map01130 map01200 map04066 map04922 map05230

Pfam Domains

Protein Families

Transket_pyr Transketolase_C

Protein Analysis

222

Amino Acids

24.8

Weight (kDa)

9.25

Isoelectric Point (pI)

52.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015753)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0426281 RchiOBHm_Chr7g0210381
rosa_laevigata	RLG00000008534 RLG00000022487 RLG00000029835
rosa_multiflora	Rmu_sc0001913.1_g000033 Rmu_sc0007894.1_g000003
rosa_roxburghii	Rroxscaffold_1G00040390
rosa_rugosa	Rorug02G0466700 Rorug03G0118900 Rorug04G0140800
rosa_samantha	Rh2DG054500 Rh4BG387800 Rh4CG286500 Rh5AG015100 Rh5CG016200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	412
AccII	CGCG	1 cut(s)	351
AciI	CCGC	1 cut(s)	349
AclWI	GGATC	1 cut(s)	335
AcsI	RAATTY	1 cut(s)	596
AcuI	CTGAAG	1 cut(s)	258
AcvI	CACGTG	1 cut(s)	308
AfaI	GTAC	1 cut(s)	104
AfiI	CCNNNNNNNGG	3 cut(s)	412, 586, 631
AflIII	ACRYGT	1 cut(s)	307
AgsI	TTSAA	5 cut(s)	203, 323, 365, 497, 566
AjnI	CCWGG	1 cut(s)	46
AluBI	AGCT	2 cut(s)	9, 401
AluI	AGCT	2 cut(s)	9, 401
Alw26I	GTCTC	3 cut(s)	115, 316, 400
AlwI	GGATC	1 cut(s)	335
Ama87I	CYCGRG	1 cut(s)	173
ApoI	RAATTY	1 cut(s)	596
AspA2I	CCTAGG	1 cut(s)	328
AspS9I	GGNCC	1 cut(s)	316
AsuC2I	CCSGG	2 cut(s)	174, 175
AsuHPI	GGTGA	1 cut(s)	500
AvaI	CYCGRG	1 cut(s)	173
AvaII	GGWCC	1 cut(s)	316
AvrII	CCTAGG	1 cut(s)	328
BarI	GAAGNNNNNNTAC	2 cut(s)	231, 263
BauI	CACGAG	1 cut(s)	390
BbrPI	CACGTG	1 cut(s)	308
BccI	CCATC	3 cut(s)	286, 310, 632
BciT130I	CCWGG	1 cut(s)	48
BclI	TGATCA	1 cut(s)	34
BcnI	CCSGG	2 cut(s)	174, 175
BcoDI	GTCTC	3 cut(s)	115, 316, 400
BfaI	CTAG	1 cut(s)	329
BlnI	CCTAGG	1 cut(s)	328
Bme1390I	CCNGG	3 cut(s)	48, 174, 175
Bme18I	GGWCC	1 cut(s)	316
BmeT110I	CYCGRG	1 cut(s)	173
BmgT120I	GGNCC	1 cut(s)	316
BmiI	GGNNCC	2 cut(s)	573, 591
BmrFI	CCNGG	3 cut(s)	48, 174, 175
BpmI	CTGGAG	1 cut(s)	576
BpuEI	CTTGAG	1 cut(s)	173
BpuMI	CCSGG	2 cut(s)	174, 175
BsaAI	YACGTR	1 cut(s)	308
BsaJI	CCNNGG	5 cut(s)	46, 47, 172, 173, 328
BsaXI	ACNNNNNCTCC	2 cut(s)	118, 148
Bsc4I	CCNNNNNNNGG	3 cut(s)	412, 586, 631
BseBI	CCWGG	1 cut(s)	48
BseDI	CCNNGG	5 cut(s)	46, 47, 172, 173, 328
BseGI	GGATG	1 cut(s)	274
BseLI	CCNNNNNNNGG	3 cut(s)	412, 586, 631
BseMII	CTCAG	2 cut(s)	175, 411
BseYI	CCCAGC	1 cut(s)	612
Bsh1236I	CGCG	1 cut(s)	351
BsiHKCI	CYCGRG	1 cut(s)	173
BsiSI	CCGG	1 cut(s)	174
BslFI	GGGAC	2 cut(s)	338, 346
BslI	CCNNNNNNNGG	3 cut(s)	412, 586, 631
BsmAI	GTCTC	3 cut(s)	115, 316, 400
BsmFI	GGGAC	2 cut(s)	338, 346
BsoBI	CYCGRG	1 cut(s)	173
Bsp143I	GATC	6 cut(s)	34, 192, 256, 340, 490, 583
BspACI	CCGC	1 cut(s)	349
BspCNI	CTCAG	2 cut(s)	174, 410
BspFNI	CGCG	1 cut(s)	351
BspLI	GGNNCC	2 cut(s)	573, 591
BspPI	GGATC	1 cut(s)	335
BssECI	CCNNGG	5 cut(s)	46, 47, 172, 173, 328
BssMI	GATC	6 cut(s)	34, 192, 256, 340, 490, 583
BssSI	CACGAG	1 cut(s)	390
BssT1I	CCWWGG	1 cut(s)	328
Bst2BI	CACGAG	1 cut(s)	390
Bst2UI	CCWGG	1 cut(s)	48
Bst4CI	ACNGT	4 cut(s)	73, 199, 505, 554
Bst6I	CTCTTC	2 cut(s)	27, 561
BstBAI	YACGTR	1 cut(s)	308
BstC8I	GCNNGC	3 cut(s)	218, 454, 618
BstDEI	CTNAG	4 cut(s)	140, 161, 397, 513
BstF5I	GGATG	1 cut(s)	274
BstFNI	CGCG	1 cut(s)	351
BstKTI	GATC	6 cut(s)	37, 195, 259, 343, 493, 586
BstMAI	GTCTC	3 cut(s)	115, 316, 400
BstMBI	GATC	6 cut(s)	34, 192, 256, 340, 490, 583
BstNI	CCWGG	1 cut(s)	48
BstNSI	RCATGY	1 cut(s)	220
BstSCI	CCNGG	3 cut(s)	46, 172, 173
BstUI	CGCG	1 cut(s)	351
BtsCI	GGATG	1 cut(s)	274
BtsIMutI	CAGTG	2 cut(s)	510, 552
Cac8I	GCNNGC	3 cut(s)	218, 454, 618
Cfr13I	GGNCC	1 cut(s)	316
Cfr9I	CCCGGG	1 cut(s)	173
CseI	GACGC	1 cut(s)	340
Csp6I	GTAC	1 cut(s)	103
CspCI	CAANNNNNGTGG	2 cut(s)	58, 93
CviAII	CATG	1 cut(s)	217
CviQI	GTAC	1 cut(s)	103
DdeI	CTNAG	4 cut(s)	140, 161, 397, 513
DpnI	GATC	6 cut(s)	36, 194, 258, 342, 492, 585
DpnII	GATC	6 cut(s)	34, 192, 256, 340, 490, 583
Eam1104I	CTCTTC	2 cut(s)	27, 561
EarI	CTCTTC	2 cut(s)	27, 561
Eco130I	CCWWGG	1 cut(s)	328
Eco47I	GGWCC	1 cut(s)	316
Eco57I	CTGAAG	1 cut(s)	258
Eco72I	CACGTG	1 cut(s)	308
Eco88I	CYCGRG	1 cut(s)	173
EcoRI	GAATTC	1 cut(s)	596
EcoRII	CCWGG	1 cut(s)	46
EcoT14I	CCWWGG	1 cut(s)	328
ErhI	CCWWGG	1 cut(s)	328
FaeI	CATG	1 cut(s)	220
FaiI	YATR	5 cut(s)	59, 207, 218, 248, 530
FaqI	GGGAC	2 cut(s)	338, 346
FatI	CATG	1 cut(s)	216
FauI	CCCGC	1 cut(s)	356
FbaI	TGATCA	1 cut(s)	34
FokI	GGATG	1 cut(s)	281
FspBI	CTAG	1 cut(s)	329
GsaI	CCCAGC	1 cut(s)	616
GsuI	CTGGAG	1 cut(s)	576
HapII	CCGG	1 cut(s)	174
HgaI	GACGC	1 cut(s)	340
Hin1II	CATG	1 cut(s)	220
HinfI	GANTC	1 cut(s)	536
HpaII	CCGG	1 cut(s)	174
HphI	GGTGA	1 cut(s)	500
Hpy166II	GTNNAC	1 cut(s)	550
Hpy188I	TCNGA	2 cut(s)	119, 164
Hpy188III	TCNNGA	6 cut(s)	153, 190, 236, 260, 278, 593
Hpy8I	GTNNAC	1 cut(s)	550
HpyAV	CCTTC	3 cut(s)	150, 329, 460
HpyCH4III	ACNGT	4 cut(s)	73, 199, 505, 554
HpyCH4IV	ACGT	1 cut(s)	307
HpyCH4V	TGCA	1 cut(s)	185
HpyF3I	CTNAG	4 cut(s)	140, 161, 397, 513
HpySE526I	ACGT	1 cut(s)	307
Hsp92II	CATG	1 cut(s)	220
Ksp22I	TGATCA	1 cut(s)	34
Kzo9I	GATC	6 cut(s)	34, 192, 256, 340, 490, 583
LmnI	GCTCC	2 cut(s)	595, 625
MaeI	CTAG	1 cut(s)	329
MaeII	ACGT	1 cut(s)	307
MaeIII	GTNAC	1 cut(s)	444
MalI	GATC	6 cut(s)	36, 194, 258, 342, 492, 585
MboI	GATC	6 cut(s)	34, 192, 256, 340, 490, 583
MboII	GAAGA	7 cut(s)	14, 293, 417, 485, 545, 578, 647
MluCI	AATT	1 cut(s)	596
MmeI	TCCRAC	1 cut(s)	462
MnlI	CCTC	4 cut(s)	30, 399, 562, 635
MseI	TTAA	3 cut(s)	222, 471, 483
MspI	CCGG	1 cut(s)	174
MspR9I	CCNGG	3 cut(s)	48, 174, 175
MvaI	CCWGG	1 cut(s)	48
MvnI	CGCG	1 cut(s)	351
NciI	CCSGG	2 cut(s)	174, 175
NdeII	GATC	6 cut(s)	34, 192, 256, 340, 490, 583
NlaIII	CATG	1 cut(s)	220
NlaIV	GGNNCC	2 cut(s)	573, 591
NmuCI	GTSAC	1 cut(s)	444
NspI	RCATGY	1 cut(s)	220
PaeI	GCATGC	1 cut(s)	220
PasI	CCCWGGG	1 cut(s)	47
PfeI	GAWTC	1 cut(s)	536
PflMI	CCANNNNNTGG	1 cut(s)	412
PmaCI	CACGTG	1 cut(s)	308
PmlI	CACGTG	1 cut(s)	308
Ppu21I	YACGTR	1 cut(s)	308
Psp6I	CCWGG	1 cut(s)	46
PspCI	CACGTG	1 cut(s)	308
PspFI	CCCAGC	1 cut(s)	612
PspGI	CCWGG	1 cut(s)	46
PspN4I	GGNNCC	2 cut(s)	573, 591
PspPI	GGNCC	1 cut(s)	316
RsaI	GTAC	1 cut(s)	104
RsaNI	GTAC	1 cut(s)	103
SaqAI	TTAA	3 cut(s)	222, 471, 483
Sau3AI	GATC	6 cut(s)	34, 192, 256, 340, 490, 583
Sau96I	GGNCC	1 cut(s)	316
ScrFI	CCNGG	3 cut(s)	48, 174, 175
SetI	ASST	6 cut(s)	11, 310, 391, 403, 471, 666
SinI	GGWCC	1 cut(s)	316
SmaI	CCCGGG	1 cut(s)	175
SmlI	CTYRAG	1 cut(s)	188
SmoI	CTYRAG	1 cut(s)	188
SphI	GCATGC	1 cut(s)	220
Sse9I	AATT	1 cut(s)	596
SsiI	CCGC	1 cut(s)	349
SspMI	CTAG	1 cut(s)	329
StyD4I	CCNGG	3 cut(s)	46, 172, 173
StyI	CCWWGG	1 cut(s)	328
TaaI	ACNGT	4 cut(s)	73, 199, 505, 554
TaiI	ACGT	1 cut(s)	310
TaqII	GACCGA	1 cut(s)	304
TasI	AATT	1 cut(s)	596
TatI	WGTACW	1 cut(s)	102
TfiI	GAWTC	1 cut(s)	536
Tru1I	TTAA	3 cut(s)	222, 471, 483
Tru9I	TTAA	3 cut(s)	222, 471, 483
TscAI	CASTG	2 cut(s)	510, 552
TseFI	GTSAC	1 cut(s)	444
Tsp45I	GTSAC	1 cut(s)	444
TspDTI	ATGAA	2 cut(s)	417, 589
TspMI	CCCGGG	1 cut(s)	173
TspRI	CASTG	2 cut(s)	510, 552
Van91I	CCANNNNNTGG	1 cut(s)	412
VpaK11BI	GGWCC	1 cut(s)	316
XapI	RAATTY	1 cut(s)	596
XceI	RCATGY	1 cut(s)	220
XmaI	CCCGGG	1 cut(s)	173
XmaJI	CCTAGG	1 cut(s)	328
XspI	CTAG	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.