Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0015753

Physical Location & Seq

Genomic Coordinates Forward (+)

31738256 .. 31738798

Gene Structure 543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008534

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGGCCACCGTCTTCAGAGCCACTTCCGCCGCCATATCCTCCCGGAAACTCCACCACCCTTCCCCTAGATCCCTCCCAGGGAAGAAGACTGGCTTTCTTGTGGTTAGATCTGATGCCGGAATTAACCCGAATGCTAGGGCTCACCAGACCGATCAGTTGAGCACCAATGATGTTGCGACAAAAGCTGCTGCTCCTGTGTATGTCTATGTGAAGTTTTTAGCTTTTTACTGTTATGCTTCTGTTGTTTTTGCTAAATTTGATTCTGATATAGTTTTGAAATCACAGGTTTTGGAGATGGTAACTGTGTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004738 GO:0004739 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008270 GO:0008610 GO:0009058 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009856 GO:0009941 GO:0009987 GO:0010240 GO:0016053 GO:0016491 GO:0016624 GO:0016903 GO:0019752 GO:0022414 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032787 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045254 GO:0046394 GO:0046872 GO:0046914 GO:0048856 GO:0048868 GO:0051704 GO:0055114 GO:0071704 GO:0072330 GO:1901576 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00010 ko00020 ko00620 ko01100 ko01110 ko01120 ko01130 ko01200 ko04066 ko04922 ko05230 map00010 map00020 map00620 map01100 map01110 map01120 map01130 map01200 map04066 map04922 map05230

Pfam Domains

Protein Families

Transket_pyr Transketolase_C

Protein Analysis

104

Amino Acids

11.28

Weight (kDa)

9.78

Isoelectric Point (pI)

33.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015753)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0426281 RchiOBHm_Chr7g0210381
rosa_laevigata	RLG00000008534 RLG00000022487 RLG00000029835
rosa_multiflora	Rmu_sc0001913.1_g000033 Rmu_sc0007894.1_g000003
rosa_roxburghii	Rroxscaffold_1G00040390
rosa_rugosa	Rorug02G0466700 Rorug03G0118900 Rorug04G0140800
rosa_samantha	Rh2DG054500 Rh4BG387800 Rh4CG286500 Rh5AG015100 Rh5CG016200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	27, 30
AclWI	GGATC	1 cut(s)	63
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	254
AfiI	CCNNNNNNNGG	1 cut(s)	78
AgsI	TTSAA	1 cut(s)	277
AjnI	CCWGG	1 cut(s)	76
AluBI	AGCT	2 cut(s)	185, 221
AluI	AGCT	2 cut(s)	185, 221
Alw21I	GWGCWC	1 cut(s)	164
AlwI	GGATC	1 cut(s)	63
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	185, 188
ApoI	RAATTY	1 cut(s)	254
AsuC2I	CCSGG	1 cut(s)	43
AsuHPI	GGTGA	1 cut(s)	134
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	142
BbsI	GAAGAC	2 cut(s)	4, 92
Bbv12I	GWGCWC	1 cut(s)	164
BbvI	GCAGC	2 cut(s)	172, 175
BccI	CCATC	1 cut(s)	289
BciT130I	CCWGG	1 cut(s)	78
BcnI	CCSGG	1 cut(s)	43
BfaI	CTAG	2 cut(s)	66, 135
BglII	AGATCT	1 cut(s)	107
BisI	GCNGC	3 cut(s)	30, 186, 189
BlsI	GCNGC	3 cut(s)	31, 187, 190
Bme1390I	CCNGG	2 cut(s)	43, 78
BmrFI	CCNGG	2 cut(s)	43, 78
BmsI	GCATC	1 cut(s)	103
BpiI	GAAGAC	2 cut(s)	4, 92
BpuMI	CCSGG	1 cut(s)	43
BsaJI	CCNNGG	2 cut(s)	76, 77
Bsc4I	CCNNNNNNNGG	1 cut(s)	78
Bse1I	ACTGG	1 cut(s)	94
BseBI	CCWGG	1 cut(s)	78
BseDI	CCNNGG	2 cut(s)	76, 77
BseLI	CCNNNNNNNGG	1 cut(s)	78
BseNI	ACTGG	1 cut(s)	94
BseXI	GCAGC	2 cut(s)	172, 175
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	164
BsiSI	CCGG	2 cut(s)	43, 117
BslI	CCNNNNNNNGG	1 cut(s)	78
BsmI	GAATGC	1 cut(s)	136
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	2 cut(s)	142, 164
Bsp143I	GATC	3 cut(s)	68, 107, 151
BspACI	CCGC	2 cut(s)	27, 30
BspANI	GGCC	1 cut(s)	5
BspPI	GGATC	1 cut(s)	63
BsrI	ACTGG	1 cut(s)	94
BssECI	CCNNGG	2 cut(s)	76, 77
BssMI	GATC	3 cut(s)	68, 107, 151
Bst2UI	CCWGG	1 cut(s)	78
Bst4CI	ACNGT	3 cut(s)	10, 230, 304
BstKTI	GATC	3 cut(s)	71, 110, 154
BstMBI	GATC	3 cut(s)	68, 107, 151
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 182
BstNI	CCWGG	1 cut(s)	78
BstSCI	CCNGG	2 cut(s)	41, 76
BstV1I	GCAGC	2 cut(s)	172, 175
BstV2I	GAAGAC	2 cut(s)	4, 92
BstX2I	RGATCY	2 cut(s)	68, 107
BstYI	RGATCY	2 cut(s)	68, 107
BsuRI	GGCC	1 cut(s)	5
CviJI	RGCY	6 cut(s)	5, 20, 93, 140, 185, 221
CviKI_1	RGCY	6 cut(s)	5, 20, 93, 140, 185, 221
DpnI	GATC	3 cut(s)	70, 109, 153
DpnII	GATC	3 cut(s)	68, 107, 151
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	16
Eco24I	GRGCYC	1 cut(s)	142
EcoRII	CCWGG	1 cut(s)	76
EcoT38I	GRGCYC	1 cut(s)	142
FaiI	YATR	5 cut(s)	35, 201, 207, 234, 269
FalI	AAGNNNNNCTT	2 cut(s)	77, 109
Fnu4HI	GCNGC	3 cut(s)	30, 186, 189
FriOI	GRGCYC	1 cut(s)	142
Fsp4HI	GCNGC	3 cut(s)	30, 186, 189
FspBI	CTAG	2 cut(s)	66, 135
GluI	GCNGC	3 cut(s)	30, 186, 189
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	43, 117
HinfI	GANTC	1 cut(s)	260
HpaII	CCGG	2 cut(s)	43, 117
HphI	GGTGA	1 cut(s)	134
Hpy188I	TCNGA	3 cut(s)	17, 112, 265
HpyAV	CCTTC	1 cut(s)	69
HpyCH4III	ACNGT	3 cut(s)	10, 230, 304
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 182
Kzo9I	GATC	3 cut(s)	68, 107, 151
LmnI	GCTCC	1 cut(s)	196
LpnPI	CCDG	8 cut(s)	56, 63, 75, 90, 130, 158, 207, 269
Lsp1109I	GCAGC	2 cut(s)	172, 175
LweI	GCATC	1 cut(s)	103
MaeI	CTAG	2 cut(s)	66, 135
MaeIII	GTNAC	1 cut(s)	298
MalI	GATC	3 cut(s)	70, 109, 153
MboI	GATC	3 cut(s)	68, 107, 151
MboII	GAAGA	3 cut(s)	4, 94, 97
MflI	RGATCY	2 cut(s)	68, 107
MhlI	GDGCHC	2 cut(s)	142, 164
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	120, 254
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	2 cut(s)	49, 83
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	123
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	43, 117
MspR9I	CCNGG	2 cut(s)	43, 78
Mva1269I	GAATGC	1 cut(s)	136
MvaI	CCWGG	1 cut(s)	78
MwoI	GCNNNNNNNGC	2 cut(s)	26, 182
NciI	CCSGG	1 cut(s)	43
NdeII	GATC	3 cut(s)	68, 107, 151
PasI	CCCWGGG	1 cut(s)	77
PctI	GAATGC	1 cut(s)	136
PfeI	GAWTC	1 cut(s)	260
PfoI	TCCNGGA	1 cut(s)	41
PkrI	GCNGC	3 cut(s)	31, 187, 190
Psp6I	CCWGG	1 cut(s)	76
PspGI	CCWGG	1 cut(s)	76
PsuI	RGATCY	2 cut(s)	68, 107
SaqAI	TTAA	1 cut(s)	123
SatI	GCNGC	3 cut(s)	30, 186, 189
Sau3AI	GATC	3 cut(s)	68, 107, 151
ScrFI	CCNGG	2 cut(s)	43, 78
SduI	GDGCHC	2 cut(s)	142, 164
SetI	ASST	3 cut(s)	187, 223, 288
SfaNI	GCATC	1 cut(s)	103
Sse9I	AATT	2 cut(s)	120, 254
SsiI	CCGC	2 cut(s)	27, 30
SspMI	CTAG	2 cut(s)	66, 135
StyD4I	CCNGG	2 cut(s)	41, 76
TaaI	ACNGT	3 cut(s)	10, 230, 304
TaqII	GACCGA	1 cut(s)	164
TasI	AATT	2 cut(s)	120, 254
TauI	GCSGC	1 cut(s)	32
TfiI	GAWTC	1 cut(s)	260
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TseI	GCWGC	2 cut(s)	185, 188
XapI	RAATTY	1 cut(s)	254
XspI	CTAG	2 cut(s)	66, 135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.