Rroxscaffold_1G00040390

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0015753
Physical Location & Seq
Forward (+)
58057463 .. 58058995
1533 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00040390.1

Sequence Viewer

Length: 387 bp
ATGATTACTATGACAAATACTAAGAAATCGAATTCGTATCATGCTCACAATGTTGCAACATATTCTAACTTCCACAAAGTTATGAATCAAGCACCAATCGGAGACTCGGAAACTTGTGAATGGCGAGAGGAAGCAGCTCGCAAGTGGTTCGCCAACGATTCCGCAGTGGCGCCTTCGAGCTTCCTCTATATTGGCACCGTCGAGCGAGCCACAACTCCACGAGTAGCGACACCATGGGCGGAGCAACGCCGAAGTGAATCGGTCGCCGTGCACGGAAACTCAACGATTGGATCGCCGGAGCCACTCGCGCACTTGTACCCGCCGGACATCGACCGCGGCGGGATTTTGTACACGGCGAACTCTCGCACCACCGTGGCGTGTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

14.08

Weight (kDa)

6.96

Isoelectric Point (pI)

41.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 169, 194
AccII CGCG 2 cut(s) 308, 336
AciI CCGC 6 cut(s) 162, 239, 320, 334, 336, 339
AclWI GGATC 1 cut(s) 298
AcsI RAATTY 1 cut(s) 31
AcyI GRCGYC 1 cut(s) 170
AfaI GTAC 2 cut(s) 317, 350
AleI CACNNNNGTG 1 cut(s) 371
AluBI AGCT 2 cut(s) 137, 180
AluI AGCT 2 cut(s) 137, 180
Alw21I GWGCWC 1 cut(s) 273
Alw26I GTCTC 1 cut(s) 96
Alw44I GTGCAC 1 cut(s) 269
AlwI GGATC 1 cut(s) 298
ApaLI GTGCAC 1 cut(s) 269
ApeKI GCWGC 1 cut(s) 134
ApoI RAATTY 1 cut(s) 31
AspLEI GCGC 2 cut(s) 172, 310
BaeGI GKGCMC 1 cut(s) 273
BanI GGYRCC 2 cut(s) 169, 194
BauI CACGAG 1 cut(s) 219
Bbv12I GWGCWC 1 cut(s) 273
BbvI GCAGC 1 cut(s) 146
BceAI ACGGC 2 cut(s) 251, 369
BcgI CGANNNNNNTGC 2 cut(s) 130, 164
BcoDI GTCTC 1 cut(s) 96
BfoI RGCGCY 1 cut(s) 173
BisI GCNGC 2 cut(s) 135, 337
BlsI GCNGC 2 cut(s) 136, 338
BmiI GGNNCC 3 cut(s) 171, 196, 300
BsaHI GRCGYC 1 cut(s) 170
BsaJI CCNNGG 3 cut(s) 233, 334, 372
BseDI CCNNGG 3 cut(s) 233, 334, 372
BseSI GKGCMC 1 cut(s) 273
BseXI GCAGC 1 cut(s) 146
Bsh1236I CGCG 2 cut(s) 308, 336
Bsh1285I CGRYCG 2 cut(s) 264, 334
BshNI GGYRCC 2 cut(s) 169, 194
BsiEI CGRYCG 2 cut(s) 264, 334
BsiHKAI GWGCWC 1 cut(s) 273
BsiSI CCGG 2 cut(s) 296, 323
BsmAI GTCTC 1 cut(s) 96
Bsp1286I GDGCHC 1 cut(s) 273
Bsp1407I TGTACA 1 cut(s) 348
Bsp143I GATC 1 cut(s) 290
Bsp19I CCATGG 1 cut(s) 233
BspACI CCGC 6 cut(s) 162, 239, 320, 334, 336, 339
BspFNI CGCG 2 cut(s) 308, 336
BspLI GGNNCC 3 cut(s) 171, 196, 300
BspPI GGATC 1 cut(s) 298
BspT107I GGYRCC 2 cut(s) 169, 194
BsrGI TGTACA 1 cut(s) 348
BssECI CCNNGG 3 cut(s) 233, 334, 372
BssMI GATC 1 cut(s) 290
BssNI GRCGYC 1 cut(s) 170
BssSI CACGAG 1 cut(s) 219
BssT1I CCWWGG 1 cut(s) 233
Bst2BI CACGAG 1 cut(s) 219
Bst4CI ACNGT 2 cut(s) 199, 373
BstACI GRCGYC 1 cut(s) 170
BstAUI TGTACA 1 cut(s) 348
BstC8I GCNNGC 2 cut(s) 139, 207
BstDEI CTNAG 1 cut(s) 21
BstDSI CCRYGG 3 cut(s) 233, 334, 372
BstFNI CGCG 2 cut(s) 308, 336
BstH2I RGCGCY 1 cut(s) 173
BstHHI GCGC 2 cut(s) 172, 310
BstKTI GATC 1 cut(s) 293
BstMAI GTCTC 1 cut(s) 96
BstMBI GATC 1 cut(s) 290
BstMCI CGRYCG 2 cut(s) 264, 334
BstMWI GCNNNNNNNGC 1 cut(s) 307
BstSLI GKGCMC 1 cut(s) 273
BstUI CGCG 2 cut(s) 308, 336
BstV1I GCAGC 1 cut(s) 146
BtgI CCRYGG 3 cut(s) 233, 334, 372
BtsI GCAGTG 1 cut(s) 171
BtsIMutI CAGTG 1 cut(s) 171
Cac8I GCNNGC 2 cut(s) 139, 207
CfoI GCGC 2 cut(s) 172, 310
Cfr42I CCGCGG 1 cut(s) 337
Csp6I GTAC 2 cut(s) 316, 349
CviAII CATG 2 cut(s) 41, 234
CviJI RGCY 4 cut(s) 137, 180, 209, 301
CviKI_1 RGCY 4 cut(s) 137, 180, 209, 301
CviQI GTAC 2 cut(s) 316, 349
DdeI CTNAG 1 cut(s) 21
DinI GGCGCC 1 cut(s) 171
DpnI GATC 1 cut(s) 292
DpnII GATC 1 cut(s) 290
EciI GGCGGA 1 cut(s) 254
Eco130I CCWWGG 1 cut(s) 233
EcoRI GAATTC 1 cut(s) 31
EcoT14I CCWWGG 1 cut(s) 233
EgeI GGCGCC 1 cut(s) 171
EheI GGCGCC 1 cut(s) 171
ErhI CCWWGG 1 cut(s) 233
FaeI CATG 2 cut(s) 44, 237
FaiI YATR 6 cut(s) 11, 42, 61, 83, 189, 235
FatI CATG 2 cut(s) 40, 233
FauI CCCGC 2 cut(s) 327, 332
Fnu4HI GCNGC 2 cut(s) 135, 337
Fsp4HI GCNGC 2 cut(s) 135, 337
GlaI GCGC 2 cut(s) 171, 309
GluI GCNGC 2 cut(s) 135, 337
HaeII RGCGCY 1 cut(s) 173
HapII CCGG 2 cut(s) 296, 323
HhaI GCGC 2 cut(s) 172, 310
Hin1I GRCGYC 1 cut(s) 170
Hin1II CATG 2 cut(s) 44, 237
Hin6I GCGC 2 cut(s) 170, 308
HinP1I GCGC 2 cut(s) 170, 308
HinfI GANTC 4 cut(s) 85, 104, 158, 257
HpaII CCGG 2 cut(s) 296, 323
Hpy166II GTNNAC 2 cut(s) 271, 351
Hpy188I TCNGA 2 cut(s) 101, 109
Hpy8I GTNNAC 2 cut(s) 271, 351
Hpy99I CGWCG 1 cut(s) 203
HpyAV CCTTC 1 cut(s) 183
HpyCH4III ACNGT 2 cut(s) 199, 373
HpyCH4V TGCA 2 cut(s) 56, 271
HpyF10VI GCNNNNNNNGC 1 cut(s) 307
HpyF3I CTNAG 1 cut(s) 21
Hsp92I GRCGYC 1 cut(s) 170
Hsp92II CATG 2 cut(s) 44, 237
HspAI GCGC 2 cut(s) 170, 308
KasI GGCGCC 1 cut(s) 169
KspI CCGCGG 1 cut(s) 337
Kzo9I GATC 1 cut(s) 290
LmnI GCTCC 2 cut(s) 241, 298
LpnPI CCDG 2 cut(s) 309, 336
Lsp1109I GCAGC 1 cut(s) 146
MalI GATC 1 cut(s) 292
MboI GATC 1 cut(s) 290
MhlI GDGCHC 1 cut(s) 273
MluCI AATT 1 cut(s) 31
Mly113I GGCGCC 1 cut(s) 170
MlyI GAGTC 1 cut(s) 98
MnlI CCTC 2 cut(s) 121, 194
MslI CAYNNNNRTG 1 cut(s) 371
MspA1I CMGCKG 1 cut(s) 336
MspI CCGG 2 cut(s) 296, 323
MvnI CGCG 2 cut(s) 308, 336
MwoI GCNNNNNNNGC 1 cut(s) 307
NarI GGCGCC 1 cut(s) 170
NcoI CCATGG 1 cut(s) 233
NdeII GATC 1 cut(s) 290
NlaIII CATG 2 cut(s) 44, 237
NlaIV GGNNCC 3 cut(s) 171, 196, 300
OliI CACNNNNGTG 1 cut(s) 371
PfeI GAWTC 3 cut(s) 85, 158, 257
PkrI GCNGC 2 cut(s) 136, 338
PleI GAGTC 1 cut(s) 98
PluTI GGCGCC 1 cut(s) 173
PpsI GAGTC 1 cut(s) 98
PspN4I GGNNCC 3 cut(s) 171, 196, 300
RsaI GTAC 2 cut(s) 317, 350
RsaNI GTAC 2 cut(s) 316, 349
RseI CAYNNNNRTG 1 cut(s) 371
SacII CCGCGG 1 cut(s) 337
SatI GCNGC 2 cut(s) 135, 337
Sau3AI GATC 1 cut(s) 290
SchI GAGTC 1 cut(s) 98
SduI GDGCHC 1 cut(s) 273
SetI ASST 2 cut(s) 139, 182
SfoI GGCGCC 1 cut(s) 171
Sfr303I CCGCGG 1 cut(s) 337
SgrBI CCGCGG 1 cut(s) 337
SmiMI CAYNNNNRTG 1 cut(s) 371
Sse9I AATT 1 cut(s) 31
SsiI CCGC 6 cut(s) 162, 239, 320, 334, 336, 339
SspDI GGCGCC 1 cut(s) 169
StyI CCWWGG 1 cut(s) 233
TaaI ACNGT 2 cut(s) 199, 373
TaqI TCGA 4 cut(s) 29, 176, 201, 330
TaqII GACCGA 1 cut(s) 250
TasI AATT 1 cut(s) 31
TatI WGTACW 1 cut(s) 348
TauI GCSGC 1 cut(s) 339
TfiI GAWTC 3 cut(s) 85, 158, 257
TscAI CASTG 1 cut(s) 171
TseI GCWGC 1 cut(s) 134
TspDTI ATGAA 1 cut(s) 98
TspGWI ACGGA 1 cut(s) 288
TspRI CASTG 1 cut(s) 171
VneI GTGCAC 1 cut(s) 269
XapI RAATTY 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.