Rh5CG016200
ERF Family

Belongs to the small GTPase superfamily. Arf family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0015753
Physical Location & Seq
Forward (+)
1068423 .. 1070939
2517 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG016200.1

Sequence Viewer

Length: 243 bp
ATGGATTTGATCCATGTAGATCGAATTTTAGATCTTCTAAAAGGCTGTGCAATTGATGGGGGATATGATGATAAAGATGAACTGAGGGATACTGTTTTGCTTGTATTTGCCAACAAACAAGATCTTCCTACTGCAATGAATGCTGCAGAAATAACTGATAAGCTTAGGCTTCATTCTCTCCGCCAACGTCACTGGCTTAAGATAATGAAGGCCAAGGAGTTCGGTTTGCCTTGGAGATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04072 ko04144 ko05110 ko05134 map04072 map04144 map05110 map05134
Pfam Domains
Protein Families
Arf

Protein Analysis

80

Amino Acids

9.33

Weight (kDa)

6.82

Isoelectric Point (pI)

33.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arf PF00025 25 - 66 1.1e-10 ADP-ribosylation factor family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 181
AclWI GGATC 1 cut(s) 4
AcsI RAATTY 1 cut(s) 24
AflII CTTAAG 1 cut(s) 197
AluBI AGCT 1 cut(s) 163
AluI AGCT 1 cut(s) 163
AlwI GGATC 1 cut(s) 4
AoxI GGCC 1 cut(s) 210
ApeKI GCWGC 1 cut(s) 143
ApoI RAATTY 1 cut(s) 24
BbvI GCAGC 1 cut(s) 130
BccI CCATC 1 cut(s) 50
BciVI GTATCC 1 cut(s) 82
BfaI CTAG 1 cut(s) 241
BfmI CTRYAG 1 cut(s) 144
BfrI CTTAAG 1 cut(s) 197
BfuI GTATCC 1 cut(s) 82
BglII AGATCT 2 cut(s) 31, 121
BisI GCNGC 1 cut(s) 144
BlsI GCNGC 1 cut(s) 145
Bpu10I CCTNAGC 1 cut(s) 164
BsaJI CCNNGG 2 cut(s) 213, 230
Bse1I ACTGG 1 cut(s) 197
Bse3DI GCAATG 1 cut(s) 141
BseDI CCNNGG 2 cut(s) 213, 230
BseMI GCAATG 1 cut(s) 141
BseMII CTCAG 1 cut(s) 74
BseNI ACTGG 1 cut(s) 197
BseXI GCAGC 1 cut(s) 130
BshFI GGCC 1 cut(s) 212
BsmI GAATGC 1 cut(s) 145
BsnI GGCC 1 cut(s) 212
Bsp143I GATC 4 cut(s) 9, 19, 31, 121
BspACI CCGC 1 cut(s) 181
BspANI GGCC 1 cut(s) 212
BspCNI CTCAG 1 cut(s) 75
BspMAI CTGCAG 1 cut(s) 148
BspPI GGATC 1 cut(s) 4
BspTI CTTAAG 1 cut(s) 197
BsrDI GCAATG 1 cut(s) 141
BsrI ACTGG 1 cut(s) 197
BssECI CCNNGG 2 cut(s) 213, 230
BssMI GATC 4 cut(s) 9, 19, 31, 121
BssT1I CCWWGG 2 cut(s) 213, 230
Bst4CI ACNGT 1 cut(s) 94
BstAFI CTTAAG 1 cut(s) 197
BstAPI GCANNNNNTGC 1 cut(s) 140
BstDEI CTNAG 2 cut(s) 83, 164
BstKTI GATC 4 cut(s) 12, 22, 34, 124
BstMBI GATC 4 cut(s) 9, 19, 31, 121
BstMWI GCNNNNNNNGC 1 cut(s) 140
BstSFI CTRYAG 1 cut(s) 144
BstV1I GCAGC 1 cut(s) 130
BstX2I RGATCY 2 cut(s) 31, 121
BstYI RGATCY 2 cut(s) 31, 121
BsuI GTATCC 1 cut(s) 82
BsuRI GGCC 1 cut(s) 212
BtsIMutI CAGTG 1 cut(s) 190
CviAII CATG 1 cut(s) 14
CviJI RGCY 5 cut(s) 45, 163, 169, 196, 212
CviKI_1 RGCY 5 cut(s) 45, 163, 169, 196, 212
DdeI CTNAG 2 cut(s) 83, 164
DpnI GATC 4 cut(s) 11, 21, 33, 123
DpnII GATC 4 cut(s) 9, 19, 31, 121
EciI GGCGGA 1 cut(s) 170
Eco130I CCWWGG 2 cut(s) 213, 230
EcoT14I CCWWGG 2 cut(s) 213, 230
ErhI CCWWGG 2 cut(s) 213, 230
FaeI CATG 1 cut(s) 17
FaiI YATR 2 cut(s) 15, 66
FatI CATG 1 cut(s) 13
Fnu4HI GCNGC 1 cut(s) 144
Fsp4HI GCNGC 1 cut(s) 144
FspBI CTAG 1 cut(s) 241
GluI GCNGC 1 cut(s) 144
HaeIII GGCC 1 cut(s) 212
Hin1II CATG 1 cut(s) 17
HindIII AAGCTT 1 cut(s) 161
HinfI GANTC 1 cut(s) 237
HpyAV CCTTC 1 cut(s) 202
HpyCH4III ACNGT 1 cut(s) 94
HpyCH4IV ACGT 1 cut(s) 187
HpyCH4V TGCA 3 cut(s) 50, 134, 146
HpyF10VI GCNNNNNNNGC 1 cut(s) 140
HpyF3I CTNAG 2 cut(s) 83, 164
HpySE526I ACGT 1 cut(s) 187
Hsp92II CATG 1 cut(s) 17
Kzo9I GATC 4 cut(s) 9, 19, 31, 121
LpnPI CCDG 1 cut(s) 178
Lsp1109I GCAGC 1 cut(s) 130
MaeI CTAG 1 cut(s) 241
MaeII ACGT 1 cut(s) 187
MaeIII GTNAC 1 cut(s) 188
MalI GATC 4 cut(s) 11, 21, 33, 123
MboI GATC 4 cut(s) 9, 19, 31, 121
MboII GAAGA 2 cut(s) 26, 116
MfeI CAATTG 1 cut(s) 51
MflI RGATCY 2 cut(s) 31, 121
MluCI AATT 2 cut(s) 24, 51
MnlI CCTC 1 cut(s) 78
MseI TTAA 1 cut(s) 198
MspCI CTTAAG 1 cut(s) 197
MunI CAATTG 1 cut(s) 51
Mva1269I GAATGC 1 cut(s) 145
MwoI GCNNNNNNNGC 1 cut(s) 140
NdeII GATC 4 cut(s) 9, 19, 31, 121
NlaIII CATG 1 cut(s) 17
NmuCI GTSAC 1 cut(s) 188
PctI GAATGC 1 cut(s) 145
PfeI GAWTC 1 cut(s) 237
PkrI GCNGC 1 cut(s) 145
PstI CTGCAG 1 cut(s) 148
PsuI RGATCY 2 cut(s) 31, 121
SaqAI TTAA 1 cut(s) 198
SatI GCNGC 1 cut(s) 144
Sau3AI GATC 4 cut(s) 9, 19, 31, 121
SetI ASST 2 cut(s) 165, 190
SfcI CTRYAG 1 cut(s) 144
SgeI CNNG 5 cut(s) 26, 113, 131, 205, 226
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
Sse9I AATT 2 cut(s) 24, 51
SsiI CCGC 1 cut(s) 181
SspMI CTAG 1 cut(s) 241
StyI CCWWGG 2 cut(s) 213, 230
TaaI ACNGT 1 cut(s) 94
TaiI ACGT 1 cut(s) 190
TaqI TCGA 1 cut(s) 22
TasI AATT 2 cut(s) 24, 51
TfiI GAWTC 1 cut(s) 237
Tru1I TTAA 1 cut(s) 198
Tru9I TTAA 1 cut(s) 198
TscAI CASTG 1 cut(s) 197
TseFI GTSAC 1 cut(s) 188
TseI GCWGC 1 cut(s) 143
Tsp45I GTSAC 1 cut(s) 188
TspDTI ATGAA 4 cut(s) 93, 152, 161, 221
TspRI CASTG 1 cut(s) 197
Vha464I CTTAAG 1 cut(s) 197
XapI RAATTY 1 cut(s) 24
XspI CTAG 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.