RchiOBHm_Chr7g0210381

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
28054299 .. 28056774
2476 bp
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UTR
Exon/CDS
Intron
PRQ18825

Sequence Viewer

Length: 213 bp
ATGGCGTCTAGTACGTCTGGTCCCCTACGACGTCGTTACTGCGTTCTTCGCCGGAGCGGGAGCTTTGAATCGGCTCTGTGGATTTGGAGAGATTTGGTAGCGGCGGCGCGTATTTCCGGGAGTTGCTTCGGGGAGTTCCTCAGGTTTGGTTTCGTTTTTGAGCTTTTCATTTTTGAGCTCAAATTTTCTCTCTCTTTTAATCAGAAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

70

Amino Acids

8.07

Weight (kDa)

10.27

Isoelectric Point (pI)

58.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 34
AccBSI CCGCTC 1 cut(s) 57
AccII CGCG 1 cut(s) 109
AciI CCGC 3 cut(s) 57, 101, 104
AcsI RAATTY 1 cut(s) 182
AcyI GRCGYC 2 cut(s) 5, 31
AfaI GTAC 1 cut(s) 13
AgsI TTSAA 1 cut(s) 68
AluBI AGCT 4 cut(s) 63, 163, 178, 209
AluI AGCT 4 cut(s) 63, 163, 178, 209
Alw21I GWGCWC 1 cut(s) 180
ApoI RAATTY 1 cut(s) 182
AspLEI GCGC 1 cut(s) 109
AspS9I GGNCC 1 cut(s) 20
AsuC2I CCSGG 1 cut(s) 118
AvaII GGWCC 1 cut(s) 20
AxyI CCTNAGG 1 cut(s) 140
BanII GRGCYC 1 cut(s) 180
Bbv12I GWGCWC 1 cut(s) 180
BcnI CCSGG 1 cut(s) 118
BfaI CTAG 1 cut(s) 9
BisI GCNGC 2 cut(s) 102, 105
BlsI GCNGC 2 cut(s) 103, 106
Bme1390I CCNGG 1 cut(s) 118
Bme18I GGWCC 1 cut(s) 20
BmgT120I GGNCC 1 cut(s) 20
BmiI GGNNCC 1 cut(s) 22
BmrFI CCNGG 1 cut(s) 118
BpuMI CCSGG 1 cut(s) 118
BsaHI GRCGYC 2 cut(s) 5, 31
Bse21I CCTNAGG 1 cut(s) 140
BseMII CTCAG 1 cut(s) 154
Bsh1236I CGCG 1 cut(s) 109
BsiHKAI GWGCWC 1 cut(s) 180
BsiSI CCGG 2 cut(s) 52, 117
BslFI GGGAC 1 cut(s) 6
BsmFI GGGAC 1 cut(s) 6
Bsp1286I GDGCHC 1 cut(s) 180
BspACI CCGC 3 cut(s) 57, 101, 104
BspCNI CTCAG 1 cut(s) 153
BspFNI CGCG 1 cut(s) 109
BspLI GGNNCC 1 cut(s) 22
BsrBI CCGCTC 1 cut(s) 57
BssNI GRCGYC 2 cut(s) 5, 31
BstACI GRCGYC 2 cut(s) 5, 31
BstDEI CTNAG 1 cut(s) 140
BstFNI CGCG 1 cut(s) 109
BstHHI GCGC 1 cut(s) 109
BstMWI GCNNNNNNNGC 1 cut(s) 48
BstSCI CCNGG 1 cut(s) 116
BstUI CGCG 1 cut(s) 109
Bsu36I CCTNAGG 1 cut(s) 140
CfoI GCGC 1 cut(s) 109
Cfr13I GGNCC 1 cut(s) 20
Csp6I GTAC 1 cut(s) 12
CviJI RGCY 5 cut(s) 63, 74, 163, 178, 209
CviKI_1 RGCY 5 cut(s) 63, 74, 163, 178, 209
CviQI GTAC 1 cut(s) 12
DdeI CTNAG 1 cut(s) 140
Ecl136II GAGCTC 1 cut(s) 178
Eco24I GRGCYC 1 cut(s) 180
Eco47I GGWCC 1 cut(s) 20
Eco53kI GAGCTC 1 cut(s) 178
Eco81I CCTNAGG 1 cut(s) 140
EcoICRI GAGCTC 1 cut(s) 178
EcoT38I GRGCYC 1 cut(s) 180
FaqI GGGAC 1 cut(s) 6
FauI CCCGC 1 cut(s) 50
Fnu4HI GCNGC 2 cut(s) 102, 105
FriOI GRGCYC 1 cut(s) 180
Fsp4HI GCNGC 2 cut(s) 102, 105
FspBI CTAG 1 cut(s) 9
GlaI GCGC 1 cut(s) 108
GluI GCNGC 2 cut(s) 102, 105
HapII CCGG 2 cut(s) 52, 117
HhaI GCGC 1 cut(s) 109
Hin1I GRCGYC 2 cut(s) 5, 31
Hin6I GCGC 1 cut(s) 107
HinP1I GCGC 1 cut(s) 107
HindIII AAGCTT 1 cut(s) 207
HinfI GANTC 1 cut(s) 68
HpaII CCGG 2 cut(s) 52, 117
Hpy188I TCNGA 1 cut(s) 204
Hpy99I CGWCG 2 cut(s) 33, 36
HpyCH4IV ACGT 2 cut(s) 14, 31
HpyF10VI GCNNNNNNNGC 1 cut(s) 48
HpyF3I CTNAG 1 cut(s) 140
HpySE526I ACGT 2 cut(s) 14, 31
Hsp92I GRCGYC 2 cut(s) 5, 31
HspAI GCGC 1 cut(s) 107
LmnI GCTCC 2 cut(s) 54, 60
LpnPI CCDG 4 cut(s) 3, 65, 127, 130
MaeI CTAG 1 cut(s) 9
MaeII ACGT 2 cut(s) 14, 31
MaeIII GTNAC 1 cut(s) 35
MbiI CCGCTC 1 cut(s) 57
MboII GAAGA 1 cut(s) 38
MhlI GDGCHC 1 cut(s) 180
MluCI AATT 1 cut(s) 182
MnlI CCTC 1 cut(s) 149
MseI TTAA 1 cut(s) 198
MspI CCGG 2 cut(s) 52, 117
MspR9I CCNGG 1 cut(s) 118
MvnI CGCG 1 cut(s) 109
MwoI GCNNNNNNNGC 1 cut(s) 48
NciI CCSGG 1 cut(s) 118
NlaIV GGNNCC 1 cut(s) 22
PfeI GAWTC 1 cut(s) 68
PfoI TCCNGGA 1 cut(s) 116
PkrI GCNGC 2 cut(s) 103, 106
Psp124BI GAGCTC 1 cut(s) 180
PspN4I GGNNCC 1 cut(s) 22
PspPI GGNCC 1 cut(s) 20
RsaI GTAC 1 cut(s) 13
RsaNI GTAC 1 cut(s) 12
SacI GAGCTC 1 cut(s) 180
SaqAI TTAA 1 cut(s) 198
SatI GCNGC 2 cut(s) 102, 105
Sau96I GGNCC 1 cut(s) 20
ScrFI CCNGG 1 cut(s) 118
SduI GDGCHC 1 cut(s) 180
SetI ASST 7 cut(s) 17, 34, 65, 146, 165, 180, 211
SgeI CNNG 9 cut(s) 21, 30, 64, 70, 120, 129, 130, 142, 154
SinI GGWCC 1 cut(s) 20
Sse9I AATT 1 cut(s) 182
SsiI CCGC 3 cut(s) 57, 101, 104
SspMI CTAG 1 cut(s) 9
SstI GAGCTC 1 cut(s) 180
StyD4I CCNGG 1 cut(s) 116
TaiI ACGT 2 cut(s) 17, 34
TasI AATT 1 cut(s) 182
TauI GCSGC 2 cut(s) 104, 107
TfiI GAWTC 1 cut(s) 68
Tru1I TTAA 1 cut(s) 198
Tru9I TTAA 1 cut(s) 198
TspDTI ATGAA 1 cut(s) 157
VpaK11BI GGWCC 1 cut(s) 20
XapI RAATTY 1 cut(s) 182
XspI CTAG 1 cut(s) 9
ZraI GACGTC 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.