Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0015753

Physical Location & Seq

Genomic Coordinates Forward (+)

3936578 .. 3937157

Gene Structure 580 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG054500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGCCACCGTCTTCGGAGCCACTTCCGCCGCCATATCCTCCCGGAAACTCCACCTCCCTTCCCCTAGATCCCTCCCAGGGAGGAAGATTGGCTTTCCTGTGGTTAGATCTGATGCCGGAGTTAACCCGAATGCTAGAGCTCACCAGACCGATCAGTTGAGCACCAATGCTGTTGTGACAAAAGCTACTGCTCCTGTGTATGTCTATGTAAAGTTTTTAGCTTTTTACTGTTATGCTTCTGTTGTTTTTGCTAAATTTGATTCTGATATAGTTTTGAGATCACAGGTTTTGGAGATGGGTAACTGTGTGGTAGTCAAGGTTAAGAATCTATGGTTGTATGATTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004738 GO:0004739 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008270 GO:0008610 GO:0009058 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009856 GO:0009941 GO:0009987 GO:0010240 GO:0016053 GO:0016491 GO:0016624 GO:0016903 GO:0019752 GO:0022414 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032787 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045254 GO:0046394 GO:0046872 GO:0046914 GO:0048856 GO:0048868 GO:0051704 GO:0055114 GO:0071704 GO:0072330 GO:1901576 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00010 ko00020 ko00620 ko01100 ko01110 ko01120 ko01130 ko01200 ko04066 ko04922 ko05230 map00010 map00020 map00620 map01100 map01110 map01120 map01130 map01200 map04066 map04922 map05230

Pfam Domains

Protein Families

Transket_pyr Transketolase_C

Protein Analysis

115

Amino Acids

12.6

Weight (kDa)

9.74

Isoelectric Point (pI)

45.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015753)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0426281 RchiOBHm_Chr7g0210381
rosa_laevigata	RLG00000008534 RLG00000022487 RLG00000029835
rosa_multiflora	Rmu_sc0001913.1_g000033 Rmu_sc0007894.1_g000003
rosa_roxburghii	Rroxscaffold_1G00040390
rosa_rugosa	Rorug02G0466700 Rorug03G0118900 Rorug04G0140800
rosa_samantha	Rh2DG054500 Rh4BG387800 Rh4CG286500 Rh5AG015100 Rh5CG016200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	27, 30
AclWI	GGATC	1 cut(s)	63
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	254
AfiI	CCNNNNNNNGG	1 cut(s)	78
AjnI	CCWGG	1 cut(s)	76
AluBI	AGCT	3 cut(s)	140, 185, 221
AluI	AGCT	3 cut(s)	140, 185, 221
Alw21I	GWGCWC	2 cut(s)	142, 164
AlwI	GGATC	1 cut(s)	63
AoxI	GGCC	1 cut(s)	3
ApoI	RAATTY	1 cut(s)	254
AsuC2I	CCSGG	1 cut(s)	43
AsuHPI	GGTGA	1 cut(s)	134
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	142
BbsI	GAAGAC	1 cut(s)	4
Bbv12I	GWGCWC	2 cut(s)	142, 164
BccI	CCATC	1 cut(s)	289
BciT130I	CCWGG	1 cut(s)	78
BcnI	CCSGG	1 cut(s)	43
BfaI	CTAG	3 cut(s)	66, 135, 346
BglII	AGATCT	1 cut(s)	107
BisI	GCNGC	1 cut(s)	30
BlsI	GCNGC	1 cut(s)	31
Bme1390I	CCNGG	2 cut(s)	43, 78
BmiI	GGNNCC	1 cut(s)	19
BmrFI	CCNGG	2 cut(s)	43, 78
BmsI	GCATC	1 cut(s)	103
BpiI	GAAGAC	1 cut(s)	4
BpuMI	CCSGG	1 cut(s)	43
BsaJI	CCNNGG	2 cut(s)	76, 77
BsaXI	ACNNNNNCTCC	2 cut(s)	39, 69
Bsc4I	CCNNNNNNNGG	1 cut(s)	78
BseBI	CCWGG	1 cut(s)	78
BseDI	CCNNGG	2 cut(s)	76, 77
BseLI	CCNNNNNNNGG	1 cut(s)	78
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	2 cut(s)	142, 164
BsiSI	CCGG	2 cut(s)	43, 117
BslI	CCNNNNNNNGG	1 cut(s)	78
BsmI	GAATGC	1 cut(s)	136
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	2 cut(s)	142, 164
Bsp143I	GATC	4 cut(s)	68, 107, 151, 278
BspACI	CCGC	2 cut(s)	27, 30
BspANI	GGCC	1 cut(s)	5
BspLI	GGNNCC	1 cut(s)	19
BspPI	GGATC	1 cut(s)	63
BssECI	CCNNGG	2 cut(s)	76, 77
BssMI	GATC	4 cut(s)	68, 107, 151, 278
Bst2UI	CCWGG	1 cut(s)	78
Bst4CI	ACNGT	3 cut(s)	10, 230, 305
BstKTI	GATC	4 cut(s)	71, 110, 154, 281
BstMBI	GATC	4 cut(s)	68, 107, 151, 278
BstMWI	GCNNNNNNNGC	1 cut(s)	26
BstNI	CCWGG	1 cut(s)	78
BstSCI	CCNGG	2 cut(s)	41, 76
BstV2I	GAAGAC	1 cut(s)	4
BstX2I	RGATCY	2 cut(s)	68, 107
BstYI	RGATCY	2 cut(s)	68, 107
BsuRI	GGCC	1 cut(s)	5
CviJI	RGCY	6 cut(s)	5, 20, 93, 140, 185, 221
CviKI_1	RGCY	6 cut(s)	5, 20, 93, 140, 185, 221
DpnI	GATC	4 cut(s)	70, 109, 153, 280
DpnII	GATC	4 cut(s)	68, 107, 151, 278
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	16
Ecl136II	GAGCTC	1 cut(s)	140
Eco24I	GRGCYC	1 cut(s)	142
Eco53kI	GAGCTC	1 cut(s)	140
EcoICRI	GAGCTC	1 cut(s)	140
EcoRII	CCWGG	1 cut(s)	76
EcoT38I	GRGCYC	1 cut(s)	142
FaiI	YATR	7 cut(s)	35, 201, 207, 234, 269, 331, 339
FalI	AAGNNNNNCTT	2 cut(s)	77, 109
Fnu4HI	GCNGC	1 cut(s)	30
FriOI	GRGCYC	1 cut(s)	142
Fsp4HI	GCNGC	1 cut(s)	30
FspBI	CTAG	3 cut(s)	66, 135, 346
GluI	GCNGC	1 cut(s)	30
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	43, 117
HincII	GTYRAC	1 cut(s)	124
HindII	GTYRAC	1 cut(s)	124
HinfI	GANTC	2 cut(s)	260, 325
HpaI	GTTAAC	1 cut(s)	124
HpaII	CCGG	2 cut(s)	43, 117
HphI	GGTGA	1 cut(s)	134
Hpy166II	GTNNAC	1 cut(s)	124
Hpy188I	TCNGA	3 cut(s)	17, 112, 265
Hpy8I	GTNNAC	1 cut(s)	124
HpyAV	CCTTC	1 cut(s)	69
HpyCH4III	ACNGT	3 cut(s)	10, 230, 305
HpyF10VI	GCNNNNNNNGC	1 cut(s)	26
KspAI	GTTAAC	1 cut(s)	124
Kzo9I	GATC	4 cut(s)	68, 107, 151, 278
LmnI	GCTCC	2 cut(s)	17, 196
LpnPI	CCDG	8 cut(s)	56, 63, 90, 111, 130, 158, 207, 269
LweI	GCATC	1 cut(s)	103
MaeI	CTAG	3 cut(s)	66, 135, 346
MaeIII	GTNAC	2 cut(s)	175, 299
MalI	GATC	4 cut(s)	70, 109, 153, 280
MboI	GATC	4 cut(s)	68, 107, 151, 278
MboII	GAAGA	2 cut(s)	4, 97
MflI	RGATCY	2 cut(s)	68, 107
MhlI	GDGCHC	2 cut(s)	142, 164
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	254
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	4 cut(s)	49, 65, 75, 83
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	123, 321
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	43, 117
MspR9I	CCNGG	2 cut(s)	43, 78
Mva1269I	GAATGC	1 cut(s)	136
MvaI	CCWGG	1 cut(s)	78
MwoI	GCNNNNNNNGC	1 cut(s)	26
NciI	CCSGG	1 cut(s)	43
NdeII	GATC	4 cut(s)	68, 107, 151, 278
NlaIV	GGNNCC	1 cut(s)	19
NmuCI	GTSAC	1 cut(s)	175
PasI	CCCWGGG	1 cut(s)	77
PctI	GAATGC	1 cut(s)	136
PfeI	GAWTC	2 cut(s)	260, 325
PfoI	TCCNGGA	1 cut(s)	41
PkrI	GCNGC	1 cut(s)	31
Psp124BI	GAGCTC	1 cut(s)	142
Psp6I	CCWGG	1 cut(s)	76
PspGI	CCWGG	1 cut(s)	76
PspN4I	GGNNCC	1 cut(s)	19
PsuI	RGATCY	2 cut(s)	68, 107
SacI	GAGCTC	1 cut(s)	142
SaqAI	TTAA	2 cut(s)	123, 321
SatI	GCNGC	1 cut(s)	30
Sau3AI	GATC	4 cut(s)	68, 107, 151, 278
ScrFI	CCNGG	2 cut(s)	43, 78
SduI	GDGCHC	2 cut(s)	142, 164
SetI	ASST	6 cut(s)	57, 142, 187, 223, 288, 321
SfaNI	GCATC	1 cut(s)	103
Sse9I	AATT	1 cut(s)	254
SsiI	CCGC	2 cut(s)	27, 30
SspMI	CTAG	3 cut(s)	66, 135, 346
SstI	GAGCTC	1 cut(s)	142
StyD4I	CCNGG	2 cut(s)	41, 76
TaaI	ACNGT	3 cut(s)	10, 230, 305
TaqII	GACCGA	1 cut(s)	164
TasI	AATT	1 cut(s)	254
TauI	GCSGC	1 cut(s)	32
TfiI	GAWTC	2 cut(s)	260, 325
Tru1I	TTAA	2 cut(s)	123, 321
Tru9I	TTAA	2 cut(s)	123, 321
TseFI	GTSAC	1 cut(s)	175
Tsp45I	GTSAC	1 cut(s)	175
XapI	RAATTY	1 cut(s)	254
XspI	CTAG	3 cut(s)	66, 135, 346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.