RLG00000022487
ERF Family

Belongs to the small GTPase superfamily. Arf family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0015753
Physical Location & Seq
Forward (+)
1572234 .. 1574535
2302 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022487

Sequence Viewer

Length: 759 bp
ATGGCGTCCAGTACGTCCGATCCCCTACAACGTCGTTTCTGCATTCTTCGCCGGAGCAGGAGCTTTGAATCGGCTCTGTGGATTTGGAGAGATTTGGTAGCGGCGGTGCGTATTTCCGGGAGTTGCTTCGGGAGTTCCTCAGGTTCGGTTTTGTTTTTGAGCTTTTCATTTTTGAGCTCAAATCGAATCGATTTTGATCGGAGCTTCTCTCTCCATTTTGATTACGATCCGGACTTGTCGGACTTGAGCCACTCGCCGCAATTGTACCTGCCGAATGTCGACCAAGGTGGGATTTTGTACATTGCGACCTCGCGCACTACTAGCAGCTTAAGAATCCTCATCATCGCCGACGCCGCGATCCATCTCCTTCGTCACTATAAGCTTAATCTCCCCGACGATCTCCTCTCCTCCAAACCCTCCGATCACATCAAGTTCTTTGATTATGGCTTCGTACATCTCGAGTTATTCATGTTCCATGAACATCAGCTTCACTTTGTGGGATGTACGGGGTCAGGACAAGATCTTCTAAAAGGCTGTGCAATTGATGGGGGATATGATGATAAAATCCGTCCATTATGGAGGCACTACTTCCAGAACACTCAAGGTCTTATTTTTGTGGTTGATCGCAGTGACAGGGATCGAGTTGATGAACTGAGGGATGCTGTTTTGCTTGTATTTGCCAACAAACAAGATCTTCCTACTACAATGAATGCTGCAGAAATAACTGATAAGCTTAGGCTTCATTCTCTCCGCCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arf

Protein Analysis

253

Amino Acids

28.78

Weight (kDa)

6.4

Isoelectric Point (pI)

53.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arf PF00025 182 - 251 1.8e-17 ADP-ribosylation factor family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 276
AccI GTMKAC 1 cut(s) 279
AccII CGCG 2 cut(s) 313, 356
AccIII TCCGGA 1 cut(s) 229
AciI CCGC 5 cut(s) 101, 104, 257, 354, 751
AclWI GGATC 4 cut(s) 14, 221, 352, 645
AcyI GRCGYC 2 cut(s) 5, 351
AdeI CACNNNGTG 1 cut(s) 496
AfaI GTAC 5 cut(s) 13, 266, 299, 453, 505
AflII CTTAAG 1 cut(s) 328
AgsI TTSAA 1 cut(s) 68
AluBI AGCT 8 cut(s) 63, 162, 177, 204, 327, 382, 487, 733
AluI AGCT 8 cut(s) 63, 162, 177, 204, 327, 382, 487, 733
Alw21I GWGCWC 1 cut(s) 179
AlwI GGATC 4 cut(s) 14, 221, 352, 645
Ama87I CYCGRG 1 cut(s) 458
Aor13HI TCCGGA 1 cut(s) 229
ApeKI GCWGC 2 cut(s) 324, 713
AspLEI GCGC 1 cut(s) 315
AsuC2I CCSGG 1 cut(s) 118
AvaI CYCGRG 1 cut(s) 458
AxyI CCTNAGG 1 cut(s) 139
BanII GRGCYC 1 cut(s) 179
Bbv12I GWGCWC 1 cut(s) 179
BbvI GCAGC 2 cut(s) 336, 700
BccI CCATC 2 cut(s) 369, 539
BcnI CCSGG 1 cut(s) 118
BfaI CTAG 1 cut(s) 321
BfmI CTRYAG 1 cut(s) 714
BfrI CTTAAG 1 cut(s) 328
BfuAI ACCTGC 1 cut(s) 276
BglII AGATCT 2 cut(s) 520, 691
BisI GCNGC 5 cut(s) 102, 257, 325, 354, 714
BlsI GCNGC 5 cut(s) 103, 258, 326, 355, 715
Bme1390I CCNGG 1 cut(s) 118
BmeT110I CYCGRG 1 cut(s) 458
BmrFI CCNGG 1 cut(s) 118
BmsI GCATC 1 cut(s) 649
BplI GAGNNNNNCTC 2 cut(s) 193, 225
Bpu10I CCTNAGC 1 cut(s) 734
BpuEI CTTGAG 2 cut(s) 265, 585
BpuMI CCSGG 1 cut(s) 118
Bsa29I ATCGAT 1 cut(s) 189
BsaBI GATNNNNATC 2 cut(s) 195, 225
BsaHI GRCGYC 2 cut(s) 5, 351
BsaJI CCNNGG 1 cut(s) 283
BsaWI WCCGGW 1 cut(s) 229
Bse1I ACTGG 1 cut(s) 9
Bse21I CCTNAGG 1 cut(s) 139
Bse3DI GCAATG 1 cut(s) 300
Bse8I GATNNNNATC 2 cut(s) 195, 225
BseAI TCCGGA 1 cut(s) 229
BseCI ATCGAT 1 cut(s) 189
BseDI CCNNGG 1 cut(s) 283
BseGI GGATG 2 cut(s) 506, 664
BseJI GATNNNNATC 2 cut(s) 195, 225
BseMI GCAATG 1 cut(s) 300
BseMII CTCAG 2 cut(s) 153, 644
BseNI ACTGG 1 cut(s) 9
BseRI GAGGAG 2 cut(s) 392, 397
BseXI GCAGC 2 cut(s) 336, 700
Bsh1236I CGCG 2 cut(s) 313, 356
BshVI ATCGAT 1 cut(s) 189
BsiHKAI GWGCWC 1 cut(s) 179
BsiHKCI CYCGRG 1 cut(s) 458
BsiSI CCGG 3 cut(s) 52, 117, 230
BsmI GAATGC 2 cut(s) 42, 715
BsoBI CYCGRG 1 cut(s) 458
Bsp1286I GDGCHC 1 cut(s) 179
Bsp13I TCCGGA 1 cut(s) 229
Bsp1407I TGTACA 1 cut(s) 297
BspACI CCGC 5 cut(s) 101, 104, 257, 354, 751
BspCNI CTCAG 2 cut(s) 152, 645
BspDI ATCGAT 1 cut(s) 189
BspEI TCCGGA 1 cut(s) 229
BspFNI CGCG 2 cut(s) 313, 356
BspMAI CTGCAG 1 cut(s) 718
BspMI ACCTGC 1 cut(s) 276
BspPI GGATC 4 cut(s) 14, 221, 352, 645
BspTI CTTAAG 1 cut(s) 328
BsrDI GCAATG 1 cut(s) 300
BsrGI TGTACA 1 cut(s) 297
BsrI ACTGG 1 cut(s) 9
BssECI CCNNGG 1 cut(s) 283
BssNI GRCGYC 2 cut(s) 5, 351
BssT1I CCWWGG 1 cut(s) 283
BstACI GRCGYC 2 cut(s) 5, 351
BstAFI CTTAAG 1 cut(s) 328
BstAUI TGTACA 1 cut(s) 297
BstDEI CTNAG 3 cut(s) 139, 653, 734
BstF5I GGATG 2 cut(s) 506, 664
BstFNI CGCG 2 cut(s) 313, 356
BstHHI GCGC 1 cut(s) 315
BstMWI GCNNNNNNNGC 3 cut(s) 48, 321, 353
BstSCI CCNGG 1 cut(s) 116
BstSFI CTRYAG 1 cut(s) 714
BstUI CGCG 2 cut(s) 313, 356
BstV1I GCAGC 2 cut(s) 336, 700
BstX2I RGATCY 2 cut(s) 520, 691
BstYI RGATCY 2 cut(s) 520, 691
Bsu15I ATCGAT 1 cut(s) 189
Bsu36I CCTNAGG 1 cut(s) 139
BsuTUI ATCGAT 1 cut(s) 189
BtgZI GCGATG 1 cut(s) 328
BtsCI GGATG 2 cut(s) 506, 664
BtsI GCAGTG 1 cut(s) 634
BtsIMutI CAGTG 1 cut(s) 634
BveI ACCTGC 1 cut(s) 276
CfoI GCGC 1 cut(s) 315
ClaI ATCGAT 1 cut(s) 189
CseI GACGC 1 cut(s) 359
Csp6I GTAC 5 cut(s) 12, 265, 298, 452, 504
CviAII CATG 2 cut(s) 469, 476
CviQI GTAC 5 cut(s) 12, 265, 298, 452, 504
DdeI CTNAG 3 cut(s) 139, 653, 734
DraIII CACNNNGTG 1 cut(s) 496
EciI GGCGGA 1 cut(s) 740
Ecl136II GAGCTC 1 cut(s) 177
Eco130I CCWWGG 1 cut(s) 283
Eco24I GRGCYC 1 cut(s) 179
Eco53kI GAGCTC 1 cut(s) 177
Eco81I CCTNAGG 1 cut(s) 139
Eco88I CYCGRG 1 cut(s) 458
EcoICRI GAGCTC 1 cut(s) 177
EcoT14I CCWWGG 1 cut(s) 283
EcoT38I GRGCYC 1 cut(s) 179
ErhI CCWWGG 1 cut(s) 283
FaeI CATG 2 cut(s) 472, 479
FaiI YATR 6 cut(s) 378, 444, 470, 477, 555, 577
FatI CATG 2 cut(s) 468, 475
FblI GTMKAC 1 cut(s) 279
Fnu4HI GCNGC 5 cut(s) 102, 257, 325, 354, 714
FokI GGATG 2 cut(s) 513, 671
FriOI GRGCYC 1 cut(s) 179
Fsp4HI GCNGC 5 cut(s) 102, 257, 325, 354, 714
FspBI CTAG 1 cut(s) 321
GlaI GCGC 1 cut(s) 314
GluI GCNGC 5 cut(s) 102, 257, 325, 354, 714
HapII CCGG 3 cut(s) 52, 117, 230
HgaI GACGC 1 cut(s) 359
HhaI GCGC 1 cut(s) 315
Hin1I GRCGYC 2 cut(s) 5, 351
Hin1II CATG 2 cut(s) 472, 479
Hin6I GCGC 1 cut(s) 313
HinP1I GCGC 1 cut(s) 313
HincII GTYRAC 1 cut(s) 280
HindII GTYRAC 1 cut(s) 280
HindIII AAGCTT 2 cut(s) 380, 731
HinfI GANTC 3 cut(s) 68, 186, 333
HpaII CCGG 3 cut(s) 52, 117, 230
Hpy166II GTNNAC 1 cut(s) 280
Hpy188I TCNGA 4 cut(s) 19, 201, 241, 421
Hpy188III TCNNGA 5 cut(s) 130, 230, 458, 513, 592
Hpy8I GTNNAC 1 cut(s) 280
Hpy99I CGWCG 3 cut(s) 36, 353, 398
HpyAV CCTTC 1 cut(s) 377
HpyCH4IV ACGT 2 cut(s) 14, 31
HpyCH4V TGCA 3 cut(s) 42, 539, 716
HpyF10VI GCNNNNNNNGC 3 cut(s) 48, 321, 353
HpyF3I CTNAG 3 cut(s) 139, 653, 734
HpySE526I ACGT 2 cut(s) 14, 31
Hsp92I GRCGYC 2 cut(s) 5, 351
Hsp92II CATG 2 cut(s) 472, 479
HspAI GCGC 1 cut(s) 313
Kpn2I TCCGGA 1 cut(s) 229
LmnI GCTCC 3 cut(s) 54, 60, 201
Lsp1109I GCAGC 2 cut(s) 336, 700
LweI GCATC 1 cut(s) 649
MaeI CTAG 1 cut(s) 321
MaeII ACGT 2 cut(s) 14, 31
MaeIII GTNAC 2 cut(s) 371, 629
MboII GAAGA 3 cut(s) 38, 515, 686
MfeI CAATTG 2 cut(s) 260, 540
MflI RGATCY 2 cut(s) 520, 691
MhlI GDGCHC 1 cut(s) 179
MluCI AATT 2 cut(s) 260, 540
MmeI TCCRAC 1 cut(s) 219
MnlI CCTC 8 cut(s) 148, 319, 347, 413, 418, 427, 573, 648
MroI TCCGGA 1 cut(s) 229
MseI TTAA 2 cut(s) 329, 384
MspCI CTTAAG 1 cut(s) 328
MspI CCGG 3 cut(s) 52, 117, 230
MspR9I CCNGG 1 cut(s) 118
MunI CAATTG 2 cut(s) 260, 540
Mva1269I GAATGC 2 cut(s) 42, 715
MvnI CGCG 2 cut(s) 313, 356
MwoI GCNNNNNNNGC 3 cut(s) 48, 321, 353
NciI CCSGG 1 cut(s) 118
NlaIII CATG 2 cut(s) 472, 479
NmuCI GTSAC 2 cut(s) 371, 629
PaeR7I CTCGAG 1 cut(s) 458
PcsI WCGNNNNNNNCGW 1 cut(s) 456
PctI GAATGC 2 cut(s) 42, 715
PfeI GAWTC 3 cut(s) 68, 186, 333
PfoI TCCNGGA 1 cut(s) 116
PkrI GCNGC 5 cut(s) 103, 258, 326, 355, 715
Psp124BI GAGCTC 1 cut(s) 179
PstI CTGCAG 1 cut(s) 718
PsuI RGATCY 2 cut(s) 520, 691
RsaI GTAC 5 cut(s) 13, 266, 299, 453, 505
RsaNI GTAC 5 cut(s) 12, 265, 298, 452, 504
SacI GAGCTC 1 cut(s) 179
SalI GTCGAC 1 cut(s) 278
SaqAI TTAA 2 cut(s) 329, 384
SatI GCNGC 5 cut(s) 102, 257, 325, 354, 714
ScrFI CCNGG 1 cut(s) 118
SduI GDGCHC 1 cut(s) 179
SfaNI GCATC 1 cut(s) 649
SfcI CTRYAG 1 cut(s) 714
Sfr274I CTCGAG 1 cut(s) 458
SlaI CTCGAG 1 cut(s) 458
SmlI CTYRAG 4 cut(s) 244, 328, 458, 600
SmoI CTYRAG 4 cut(s) 244, 328, 458, 600
Sse9I AATT 2 cut(s) 260, 540
SsiI CCGC 5 cut(s) 101, 104, 257, 354, 751
SspMI CTAG 1 cut(s) 321
SstI GAGCTC 1 cut(s) 179
StyD4I CCNGG 1 cut(s) 116
StyI CCWWGG 1 cut(s) 283
TaiI ACGT 2 cut(s) 17, 34
TaqI TCGA 5 cut(s) 184, 189, 279, 459, 640
TasI AATT 2 cut(s) 260, 540
TatI WGTACW 1 cut(s) 297
TauI GCSGC 3 cut(s) 104, 259, 356
TfiI GAWTC 3 cut(s) 68, 186, 333
Tru1I TTAA 2 cut(s) 329, 384
Tru9I TTAA 2 cut(s) 329, 384
TscAI CASTG 1 cut(s) 634
TseFI GTSAC 2 cut(s) 371, 629
TseI GCWGC 2 cut(s) 324, 713
Tsp45I GTSAC 2 cut(s) 371, 629
TspDTI ATGAA 6 cut(s) 156, 457, 492, 663, 722, 731
TspGWI ACGGA 1 cut(s) 557
TspRI CASTG 1 cut(s) 634
Vha464I CTTAAG 1 cut(s) 328
XhoI CTCGAG 1 cut(s) 458
XmiI GTMKAC 1 cut(s) 279
XspI CTAG 1 cut(s) 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.