Rh5AG015100
ERF Family

Belongs to the small GTPase superfamily. Arf family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0015753
Physical Location & Seq
Forward (+)
1068424 .. 1070940
2517 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG015100.1

Sequence Viewer

Length: 282 bp
ATGGATTTGATCCATGTAGATCGAATTTTAGATCTTCTAAAAGGCTGTGCAATTGATGGGGGATATGATGATAAAGATGAACTGAGGGATACTGTTTTGCTTGTATTTGCCAACAAACAAGATCTTCCTACTGCAATGAATGCTGCAGAAATAACTGATAAGCTTAGGCTTCATTCTCTCCGCCAACGTCACTGGTACATTCAGAGCACATGTGCAACCTTGGGCGAGGGACTGCTTAAGATAATGAAGGCCAAGGAGTTCGGTTTGCCTTGGAGATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04072 ko04144 ko05110 ko05134 map04072 map04144 map05110 map05134
Pfam Domains
Protein Families
Arf

Protein Analysis

93

Amino Acids

10.67

Weight (kDa)

6.26

Isoelectric Point (pI)

32.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arf PF00025 25 - 83 2.6e-16 ADP-ribosylation factor family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 181
AclWI GGATC 1 cut(s) 4
AcsI RAATTY 1 cut(s) 24
AfaI GTAC 1 cut(s) 197
AflII CTTAAG 1 cut(s) 236
AflIII ACRYGT 1 cut(s) 209
AluBI AGCT 1 cut(s) 163
AluI AGCT 1 cut(s) 163
Alw21I GWGCWC 1 cut(s) 209
AlwI GGATC 1 cut(s) 4
AoxI GGCC 1 cut(s) 249
ApeKI GCWGC 1 cut(s) 143
ApoI RAATTY 1 cut(s) 24
Bbv12I GWGCWC 1 cut(s) 209
BbvI GCAGC 1 cut(s) 130
BccI CCATC 1 cut(s) 50
BciVI GTATCC 1 cut(s) 82
BfaI CTAG 1 cut(s) 280
BfmI CTRYAG 1 cut(s) 144
BfrI CTTAAG 1 cut(s) 236
BfuI GTATCC 1 cut(s) 82
BglII AGATCT 2 cut(s) 31, 121
BisI GCNGC 1 cut(s) 144
BlsI GCNGC 1 cut(s) 145
Bpu10I CCTNAGC 1 cut(s) 164
BsaJI CCNNGG 3 cut(s) 219, 252, 269
Bse1I ACTGG 1 cut(s) 197
Bse3DI GCAATG 1 cut(s) 141
BseDI CCNNGG 3 cut(s) 219, 252, 269
BseMI GCAATG 1 cut(s) 141
BseMII CTCAG 1 cut(s) 74
BseNI ACTGG 1 cut(s) 197
BseXI GCAGC 1 cut(s) 130
BshFI GGCC 1 cut(s) 251
BsiHKAI GWGCWC 1 cut(s) 209
BslFI GGGAC 1 cut(s) 243
BsmFI GGGAC 1 cut(s) 243
BsmI GAATGC 1 cut(s) 145
BsnI GGCC 1 cut(s) 251
Bsp1286I GDGCHC 1 cut(s) 209
Bsp143I GATC 4 cut(s) 9, 19, 31, 121
BspACI CCGC 1 cut(s) 181
BspANI GGCC 1 cut(s) 251
BspCNI CTCAG 1 cut(s) 75
BspMAI CTGCAG 1 cut(s) 148
BspPI GGATC 1 cut(s) 4
BspTI CTTAAG 1 cut(s) 236
BsrDI GCAATG 1 cut(s) 141
BsrI ACTGG 1 cut(s) 197
BssECI CCNNGG 3 cut(s) 219, 252, 269
BssMI GATC 4 cut(s) 9, 19, 31, 121
BssT1I CCWWGG 3 cut(s) 219, 252, 269
Bst4CI ACNGT 1 cut(s) 94
BstAFI CTTAAG 1 cut(s) 236
BstAPI GCANNNNNTGC 1 cut(s) 140
BstDEI CTNAG 2 cut(s) 83, 164
BstKTI GATC 4 cut(s) 12, 22, 34, 124
BstMBI GATC 4 cut(s) 9, 19, 31, 121
BstMWI GCNNNNNNNGC 1 cut(s) 140
BstNSI RCATGY 1 cut(s) 213
BstSFI CTRYAG 1 cut(s) 144
BstV1I GCAGC 1 cut(s) 130
BstX2I RGATCY 2 cut(s) 31, 121
BstYI RGATCY 2 cut(s) 31, 121
BsuI GTATCC 1 cut(s) 82
BsuRI GGCC 1 cut(s) 251
BtsIMutI CAGTG 1 cut(s) 190
Csp6I GTAC 1 cut(s) 196
CviAII CATG 2 cut(s) 14, 210
CviJI RGCY 4 cut(s) 45, 163, 169, 251
CviKI_1 RGCY 4 cut(s) 45, 163, 169, 251
CviQI GTAC 1 cut(s) 196
DdeI CTNAG 2 cut(s) 83, 164
DpnI GATC 4 cut(s) 11, 21, 33, 123
DpnII GATC 4 cut(s) 9, 19, 31, 121
EciI GGCGGA 1 cut(s) 170
Eco130I CCWWGG 3 cut(s) 219, 252, 269
EcoT14I CCWWGG 3 cut(s) 219, 252, 269
ErhI CCWWGG 3 cut(s) 219, 252, 269
FaeI CATG 2 cut(s) 17, 213
FaiI YATR 3 cut(s) 15, 66, 211
FaqI GGGAC 1 cut(s) 243
FatI CATG 2 cut(s) 13, 209
Fnu4HI GCNGC 1 cut(s) 144
Fsp4HI GCNGC 1 cut(s) 144
FspBI CTAG 1 cut(s) 280
GluI GCNGC 1 cut(s) 144
HaeIII GGCC 1 cut(s) 251
Hin1II CATG 2 cut(s) 17, 213
HindIII AAGCTT 1 cut(s) 161
HinfI GANTC 1 cut(s) 276
Hpy188I TCNGA 1 cut(s) 204
HpyAV CCTTC 1 cut(s) 241
HpyCH4III ACNGT 1 cut(s) 94
HpyCH4IV ACGT 1 cut(s) 187
HpyCH4V TGCA 4 cut(s) 50, 134, 146, 215
HpyF10VI GCNNNNNNNGC 1 cut(s) 140
HpyF3I CTNAG 2 cut(s) 83, 164
HpySE526I ACGT 1 cut(s) 187
Hsp92II CATG 2 cut(s) 17, 213
Kzo9I GATC 4 cut(s) 9, 19, 31, 121
LpnPI CCDG 1 cut(s) 178
Lsp1109I GCAGC 1 cut(s) 130
MaeI CTAG 1 cut(s) 280
MaeII ACGT 1 cut(s) 187
MaeIII GTNAC 1 cut(s) 188
MalI GATC 4 cut(s) 11, 21, 33, 123
MboI GATC 4 cut(s) 9, 19, 31, 121
MboII GAAGA 2 cut(s) 26, 116
MfeI CAATTG 1 cut(s) 51
MflI RGATCY 2 cut(s) 31, 121
MhlI GDGCHC 1 cut(s) 209
MluCI AATT 2 cut(s) 24, 51
MnlI CCTC 2 cut(s) 78, 220
MseI TTAA 1 cut(s) 237
MspCI CTTAAG 1 cut(s) 236
MunI CAATTG 1 cut(s) 51
Mva1269I GAATGC 1 cut(s) 145
MwoI GCNNNNNNNGC 1 cut(s) 140
NdeII GATC 4 cut(s) 9, 19, 31, 121
NlaIII CATG 2 cut(s) 17, 213
NmuCI GTSAC 1 cut(s) 188
NspI RCATGY 1 cut(s) 213
PciI ACATGT 1 cut(s) 209
PctI GAATGC 1 cut(s) 145
PfeI GAWTC 1 cut(s) 276
PkrI GCNGC 1 cut(s) 145
PscI ACATGT 1 cut(s) 209
PstI CTGCAG 1 cut(s) 148
PsuI RGATCY 2 cut(s) 31, 121
RsaI GTAC 1 cut(s) 197
RsaNI GTAC 1 cut(s) 196
SaqAI TTAA 1 cut(s) 237
SatI GCNGC 1 cut(s) 144
Sau3AI GATC 4 cut(s) 9, 19, 31, 121
SduI GDGCHC 1 cut(s) 209
SetI ASST 3 cut(s) 165, 190, 221
SfcI CTRYAG 1 cut(s) 144
SgeI CNNG 8 cut(s) 26, 113, 131, 205, 222, 232, 238, 265
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
Sse9I AATT 2 cut(s) 24, 51
SsiI CCGC 1 cut(s) 181
SspMI CTAG 1 cut(s) 280
StyI CCWWGG 3 cut(s) 219, 252, 269
TaaI ACNGT 1 cut(s) 94
TaiI ACGT 1 cut(s) 190
TaqI TCGA 1 cut(s) 22
TasI AATT 2 cut(s) 24, 51
TfiI GAWTC 1 cut(s) 276
Tru1I TTAA 1 cut(s) 237
Tru9I TTAA 1 cut(s) 237
TscAI CASTG 1 cut(s) 197
TseFI GTSAC 1 cut(s) 188
TseI GCWGC 1 cut(s) 143
Tsp45I GTSAC 1 cut(s) 188
TspDTI ATGAA 4 cut(s) 93, 152, 161, 260
TspRI CASTG 1 cut(s) 197
Vha464I CTTAAG 1 cut(s) 236
XapI RAATTY 1 cut(s) 24
XceI RCATGY 1 cut(s) 213
XspI CTAG 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.