Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0015753

Physical Location & Seq

Genomic Coordinates Forward (+)

54165564 .. 54165899

Gene Structure 336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG387800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGCGGAGGAAGCAGCTCGCAGTGGTTCGCCAACGATTCCAGAGCAGCGCCTTCGAGCTTCCATGAGTAGCGACGCCATGGGCGGAGCAACGCCGGAAGTGAATCGGTCGCCGTACCGGAAACTCAACAGATTGGATCGCTGGAGCCACTCGCCGCACTTGTACCCGCCGGACATCGACCGCGGAGGGATTTTGTACACAGCGACCTCGCGCACCACCAGCAGCGTGTGCTCGAACGACTCCTCCTCGTCCTTGAACGGCATCGTTTTGGACCTTATTAGATTCCGGTTATCAAATGCGGTGGCTGTGGTGATAGCTAGGAAAGAAAGAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005819 GO:0005856 GO:0005886 GO:0008092 GO:0009524 GO:0015630 GO:0016020 GO:0030312 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FH2

Protein Analysis

111

Amino Acids

12.18

Weight (kDa)

9.84

Isoelectric Point (pI)

57.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015753)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0426281 RchiOBHm_Chr7g0210381
rosa_laevigata	RLG00000008534 RLG00000022487 RLG00000029835
rosa_multiflora	Rmu_sc0001913.1_g000033 Rmu_sc0007894.1_g000003
rosa_roxburghii	Rroxscaffold_1G00040390
rosa_rugosa	Rorug02G0466700 Rorug03G0118900 Rorug04G0140800
rosa_samantha	Rh2DG054500 Rh4BG387800 Rh4CG286500 Rh5AG015100 Rh5CG016200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	183, 211
AciI	CCGC	7 cut(s)	5, 84, 155, 167, 181, 183, 299
AclWI	GGATC	1 cut(s)	144
AcyI	GRCGYC	1 cut(s)	75
AfaI	GTAC	3 cut(s)	116, 164, 197
AgsI	TTSAA	1 cut(s)	256
AloI	GAACNNNNNNTCC	2 cut(s)	227, 259
AluBI	AGCT	3 cut(s)	17, 59, 317
AluI	AGCT	3 cut(s)	17, 59, 317
Alw21I	GWGCWC	1 cut(s)	233
AlwI	GGATC	1 cut(s)	144
ApeKI	GCWGC	3 cut(s)	14, 46, 222
AspLEI	GCGC	2 cut(s)	51, 213
AspS9I	GGNCC	1 cut(s)	271
AsuHPI	GGTGA	1 cut(s)	322
AvaII	GGWCC	1 cut(s)	271
Bbv12I	GWGCWC	1 cut(s)	233
BbvI	GCAGC	3 cut(s)	26, 58, 234
BceAI	ACGGC	2 cut(s)	97, 274
BcgI	CGANNNNNNTGC	2 cut(s)	35, 69
BfaI	CTAG	1 cut(s)	318
BfoI	RGCGCY	1 cut(s)	52
BisI	GCNGC	4 cut(s)	15, 47, 155, 223
BlsI	GCNGC	4 cut(s)	16, 48, 156, 224
Bme18I	GGWCC	1 cut(s)	271
BmgT120I	GGNCC	1 cut(s)	271
BmiI	GGNNCC	1 cut(s)	146
BmsI	GCATC	1 cut(s)	270
BpmI	CTGGAG	1 cut(s)	163
BsaHI	GRCGYC	1 cut(s)	75
BsaJI	CCNNGG	2 cut(s)	78, 181
BsaWI	WCCGGW	2 cut(s)	117, 285
BsaXI	ACNNNNNCTCC	2 cut(s)	227, 257
BseDI	CCNNGG	2 cut(s)	78, 181
BseRI	GAGGAG	2 cut(s)	232, 235
BseXI	GCAGC	3 cut(s)	26, 58, 234
Bsh1236I	CGCG	2 cut(s)	183, 211
Bsh1285I	CGRYCG	2 cut(s)	110, 181
BsiEI	CGRYCG	2 cut(s)	110, 181
BsiHKAI	GWGCWC	1 cut(s)	233
BsiSI	CCGG	4 cut(s)	95, 118, 170, 286
Bsp1286I	GDGCHC	1 cut(s)	233
Bsp1407I	TGTACA	1 cut(s)	195
Bsp143I	GATC	1 cut(s)	136
Bsp19I	CCATGG	1 cut(s)	78
BspACI	CCGC	7 cut(s)	5, 84, 155, 167, 181, 183, 299
BspFNI	CGCG	2 cut(s)	183, 211
BspLI	GGNNCC	1 cut(s)	146
BspPI	GGATC	1 cut(s)	144
BsrGI	TGTACA	1 cut(s)	195
BssECI	CCNNGG	2 cut(s)	78, 181
BssMI	GATC	1 cut(s)	136
BssNI	GRCGYC	1 cut(s)	75
BssT1I	CCWWGG	1 cut(s)	78
BstACI	GRCGYC	1 cut(s)	75
BstAPI	GCANNNNNTGC	1 cut(s)	228
BstAUI	TGTACA	1 cut(s)	195
BstC8I	GCNNGC	1 cut(s)	19
BstDSI	CCRYGG	2 cut(s)	78, 181
BstFNI	CGCG	2 cut(s)	183, 211
BstH2I	RGCGCY	1 cut(s)	52
BstHHI	GCGC	2 cut(s)	51, 213
BstKTI	GATC	1 cut(s)	139
BstMBI	GATC	1 cut(s)	136
BstMCI	CGRYCG	2 cut(s)	110, 181
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 219, 228
BstUI	CGCG	2 cut(s)	183, 211
BstV1I	GCAGC	3 cut(s)	26, 58, 234
BtgI	CCRYGG	2 cut(s)	78, 181
BtsI	GCAGTG	1 cut(s)	28
BtsIMutI	CAGTG	1 cut(s)	28
Cac8I	GCNNGC	1 cut(s)	19
CfoI	GCGC	2 cut(s)	51, 213
Cfr13I	GGNCC	1 cut(s)	271
Cfr42I	CCGCGG	1 cut(s)	184
CseI	GACGC	1 cut(s)	83
Csp6I	GTAC	3 cut(s)	115, 163, 196
CspCI	CAANNNNNGTGG	2 cut(s)	282, 317
CviAII	CATG	2 cut(s)	64, 79
CviJI	RGCY	5 cut(s)	17, 59, 147, 305, 317
CviKI_1	RGCY	5 cut(s)	17, 59, 147, 305, 317
CviQI	GTAC	3 cut(s)	115, 163, 196
DpnI	GATC	1 cut(s)	138
DpnII	GATC	1 cut(s)	136
EciI	GGCGGA	2 cut(s)	20, 99
Eco130I	CCWWGG	1 cut(s)	78
Eco47I	GGWCC	1 cut(s)	271
EcoT14I	CCWWGG	1 cut(s)	78
ErhI	CCWWGG	1 cut(s)	78
FaeI	CATG	2 cut(s)	67, 82
FaiI	YATR	2 cut(s)	65, 80
FatI	CATG	2 cut(s)	63, 78
FauI	CCCGC	1 cut(s)	174
Fnu4HI	GCNGC	4 cut(s)	15, 47, 155, 223
Fsp4HI	GCNGC	4 cut(s)	15, 47, 155, 223
FspBI	CTAG	1 cut(s)	318
GlaI	GCGC	2 cut(s)	50, 212
GluI	GCNGC	4 cut(s)	15, 47, 155, 223
GsuI	CTGGAG	1 cut(s)	163
HaeII	RGCGCY	1 cut(s)	52
HapII	CCGG	4 cut(s)	95, 118, 170, 286
HgaI	GACGC	1 cut(s)	83
HhaI	GCGC	2 cut(s)	51, 213
Hin1I	GRCGYC	1 cut(s)	75
Hin1II	CATG	2 cut(s)	67, 82
Hin6I	GCGC	2 cut(s)	49, 211
HinP1I	GCGC	2 cut(s)	49, 211
HinfI	GANTC	4 cut(s)	37, 103, 239, 282
HpaII	CCGG	4 cut(s)	95, 118, 170, 286
HphI	GGTGA	1 cut(s)	322
Hpy166II	GTNNAC	1 cut(s)	198
Hpy188III	TCNNGA	1 cut(s)	41
Hpy8I	GTNNAC	1 cut(s)	198
Hpy99I	CGWCG	1 cut(s)	77
HpyAV	CCTTC	1 cut(s)	62
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 219, 228
Hsp92I	GRCGYC	1 cut(s)	75
Hsp92II	CATG	2 cut(s)	67, 82
HspAI	GCGC	2 cut(s)	49, 211
KspI	CCGCGG	1 cut(s)	184
Kzo9I	GATC	1 cut(s)	136
LmnI	GCTCC	2 cut(s)	86, 144
LpnPI	CCDG	7 cut(s)	54, 108, 127, 131, 183, 232, 299
Lsp1109I	GCAGC	3 cut(s)	26, 58, 234
LweI	GCATC	1 cut(s)	270
MaeI	CTAG	1 cut(s)	318
MalI	GATC	1 cut(s)	138
MboI	GATC	1 cut(s)	136
MhlI	GDGCHC	1 cut(s)	233
MlyI	GAGTC	1 cut(s)	233
MnlI	CCTC	4 cut(s)	179, 217, 253, 256
MspA1I	CMGCKG	1 cut(s)	183
MspI	CCGG	4 cut(s)	95, 118, 170, 286
MvnI	CGCG	2 cut(s)	183, 211
MwoI	GCNNNNNNNGC	3 cut(s)	11, 219, 228
NcoI	CCATGG	1 cut(s)	78
NdeII	GATC	1 cut(s)	136
NlaIII	CATG	2 cut(s)	67, 82
NlaIV	GGNNCC	1 cut(s)	146
PfeI	GAWTC	3 cut(s)	37, 103, 282
PkrI	GCNGC	4 cut(s)	16, 48, 156, 224
PleI	GAGTC	1 cut(s)	233
PpsI	GAGTC	1 cut(s)	233
PspN4I	GGNNCC	1 cut(s)	146
PspPI	GGNCC	1 cut(s)	271
RsaI	GTAC	3 cut(s)	116, 164, 197
RsaNI	GTAC	3 cut(s)	115, 163, 196
SacII	CCGCGG	1 cut(s)	184
SatI	GCNGC	4 cut(s)	15, 47, 155, 223
Sau3AI	GATC	1 cut(s)	136
Sau96I	GGNCC	1 cut(s)	271
SchI	GAGTC	1 cut(s)	233
SduI	GDGCHC	1 cut(s)	233
SetI	ASST	5 cut(s)	19, 61, 209, 276, 319
SfaNI	GCATC	1 cut(s)	270
Sfr303I	CCGCGG	1 cut(s)	184
SgrBI	CCGCGG	1 cut(s)	184
SinI	GGWCC	1 cut(s)	271
SsiI	CCGC	7 cut(s)	5, 84, 155, 167, 181, 183, 299
SspMI	CTAG	1 cut(s)	318
StyI	CCWWGG	1 cut(s)	78
TaqI	TCGA	3 cut(s)	55, 177, 233
TaqII	GACCGA	1 cut(s)	96
TatI	WGTACW	1 cut(s)	195
TauI	GCSGC	1 cut(s)	157
TfiI	GAWTC	3 cut(s)	37, 103, 282
TscAI	CASTG	1 cut(s)	28
TseI	GCWGC	3 cut(s)	14, 46, 222
TspRI	CASTG	1 cut(s)	28
VpaK11BI	GGWCC	1 cut(s)	271
XspI	CTAG	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.