RLG00000029835

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0015753
Physical Location & Seq
Reverse (-)
49995326 .. 49997104
1779 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029835

Sequence Viewer

Length: 318 bp
ATGGCTATTAGGAATTGGCAAATCAGAAGATGTATTGTCAATTTACCATCACTGGATTTGGGAGGGATCTTGTCAGACTTGAGCCACTCGCTGCAATTGTACCCGCCGGATGTCGACCACGGCGGGATTTTGTACACTGCGACCTTGCGCACCACTAGCAGCTTAAGAATCCTCGTCGCCGCCGGCACCGCGATCCATCTCCTTCGTCACTATAAGCTCGATCTCCCCAACGATCTCCTCTCCTCCAAACCCTCCGATCAGTCTTGGACCTCCAAAGGTGCTTCCGCGCTTTCGTTTTTGCACTTGTTTTCTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

11.58

Weight (kDa)

8.98

Isoelectric Point (pI)

48.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 149
AccB1I GGYRCC 1 cut(s) 185
AccI GTMKAC 1 cut(s) 114
AccII CGCG 2 cut(s) 191, 287
AciI CCGC 5 cut(s) 104, 123, 180, 189, 285
AclWI GGATC 2 cut(s) 74, 187
AfaI GTAC 2 cut(s) 101, 134
AflII CTTAAG 1 cut(s) 163
AluBI AGCT 2 cut(s) 162, 217
AluI AGCT 2 cut(s) 162, 217
AlwI GGATC 2 cut(s) 74, 187
ApeKI GCWGC 2 cut(s) 91, 159
AspLEI GCGC 2 cut(s) 150, 289
AspS9I GGNCC 1 cut(s) 267
AvaII GGWCC 1 cut(s) 267
BanI GGYRCC 1 cut(s) 185
BbvI GCAGC 2 cut(s) 78, 171
BccI CCATC 2 cut(s) 55, 204
BceAI ACGGC 1 cut(s) 136
BfaI CTAG 1 cut(s) 156
BfrI CTTAAG 1 cut(s) 163
BisI GCNGC 3 cut(s) 92, 160, 180
BlsI GCNGC 3 cut(s) 93, 161, 181
Bme18I GGWCC 1 cut(s) 267
BmgT120I GGNCC 1 cut(s) 267
BmiI GGNNCC 1 cut(s) 187
BpuEI CTTGAG 1 cut(s) 100
BsaJI CCNNGG 1 cut(s) 118
Bse118I RCCGGY 1 cut(s) 182
Bse1I ACTGG 1 cut(s) 57
BseDI CCNNGG 1 cut(s) 118
BseGI GGATG 1 cut(s) 115
BseNI ACTGG 1 cut(s) 57
BseRI GAGGAG 2 cut(s) 227, 232
BseXI GCAGC 2 cut(s) 78, 171
Bsh1236I CGCG 2 cut(s) 191, 287
BshNI GGYRCC 1 cut(s) 185
BsiSI CCGG 2 cut(s) 107, 183
Bsp1407I TGTACA 1 cut(s) 132
Bsp143I GATC 5 cut(s) 66, 192, 220, 232, 256
BspACI CCGC 5 cut(s) 104, 123, 180, 189, 285
BspFNI CGCG 2 cut(s) 191, 287
BspLI GGNNCC 1 cut(s) 187
BspPI GGATC 2 cut(s) 74, 187
BspT107I GGYRCC 1 cut(s) 185
BspTI CTTAAG 1 cut(s) 163
BsrFI RCCGGY 1 cut(s) 182
BsrGI TGTACA 1 cut(s) 132
BsrI ACTGG 1 cut(s) 57
BssAI RCCGGY 1 cut(s) 182
BssECI CCNNGG 1 cut(s) 118
BssMI GATC 5 cut(s) 66, 192, 220, 232, 256
BstAFI CTTAAG 1 cut(s) 163
BstAUI TGTACA 1 cut(s) 132
BstC8I GCNNGC 1 cut(s) 184
BstDSI CCRYGG 1 cut(s) 118
BstF5I GGATG 1 cut(s) 115
BstFNI CGCG 2 cut(s) 191, 287
BstHHI GCGC 2 cut(s) 150, 289
BstKTI GATC 5 cut(s) 69, 195, 223, 235, 259
BstMBI GATC 5 cut(s) 66, 192, 220, 232, 256
BstMWI GCNNNNNNNGC 2 cut(s) 156, 188
BstUI CGCG 2 cut(s) 191, 287
BstV1I GCAGC 2 cut(s) 78, 171
BstX2I RGATCY 1 cut(s) 66
BstYI RGATCY 1 cut(s) 66
BtgI CCRYGG 1 cut(s) 118
BtsCI GGATG 1 cut(s) 115
BtsI GCAGTG 1 cut(s) 135
BtsIMutI CAGTG 2 cut(s) 50, 135
Cac8I GCNNGC 1 cut(s) 184
CfoI GCGC 2 cut(s) 150, 289
Cfr10I RCCGGY 1 cut(s) 182
Cfr13I GGNCC 1 cut(s) 267
Csp6I GTAC 2 cut(s) 100, 133
CviJI RGCY 4 cut(s) 5, 84, 162, 217
CviKI_1 RGCY 4 cut(s) 5, 84, 162, 217
CviQI GTAC 2 cut(s) 100, 133
DpnI GATC 5 cut(s) 68, 194, 222, 234, 258
DpnII GATC 5 cut(s) 66, 192, 220, 232, 256
Eco47I GGWCC 1 cut(s) 267
FaiI YATR 1 cut(s) 213
FauI CCCGC 2 cut(s) 111, 116
FblI GTMKAC 1 cut(s) 114
Fnu4HI GCNGC 3 cut(s) 92, 160, 180
FokI GGATG 1 cut(s) 122
Fsp4HI GCNGC 3 cut(s) 92, 160, 180
FspBI CTAG 1 cut(s) 156
FspI TGCGCA 1 cut(s) 149
GlaI GCGC 2 cut(s) 149, 288
GluI GCNGC 3 cut(s) 92, 160, 180
HapII CCGG 2 cut(s) 107, 183
HhaI GCGC 2 cut(s) 150, 289
Hin6I GCGC 2 cut(s) 148, 287
HinP1I GCGC 2 cut(s) 148, 287
HincII GTYRAC 1 cut(s) 115
HindII GTYRAC 1 cut(s) 115
HinfI GANTC 1 cut(s) 168
HpaII CCGG 2 cut(s) 107, 183
Hpy166II GTNNAC 2 cut(s) 115, 135
Hpy188I TCNGA 3 cut(s) 26, 76, 256
Hpy8I GTNNAC 2 cut(s) 115, 135
Hpy99I CGWCG 1 cut(s) 179
HpyAV CCTTC 1 cut(s) 212
HpyCH4V TGCA 2 cut(s) 94, 301
HpyF10VI GCNNNNNNNGC 2 cut(s) 156, 188
HspAI GCGC 2 cut(s) 148, 287
KroI GCCGGC 1 cut(s) 182
KroNI GCCGGC 1 cut(s) 184
Kzo9I GATC 5 cut(s) 66, 192, 220, 232, 256
LpnPI CCDG 3 cut(s) 38, 120, 196
Lsp1109I GCAGC 2 cut(s) 78, 171
MaeI CTAG 1 cut(s) 156
MaeIII GTNAC 1 cut(s) 206
MalI GATC 5 cut(s) 68, 194, 222, 234, 258
MboI GATC 5 cut(s) 66, 192, 220, 232, 256
MboII GAAGA 1 cut(s) 39
MfeI CAATTG 1 cut(s) 95
MflI RGATCY 1 cut(s) 66
MluCI AATT 3 cut(s) 13, 40, 95
MnlI CCTC 6 cut(s) 56, 182, 248, 253, 262, 280
MroNI GCCGGC 1 cut(s) 182
MseI TTAA 1 cut(s) 164
MspCI CTTAAG 1 cut(s) 163
MspI CCGG 2 cut(s) 107, 183
MunI CAATTG 1 cut(s) 95
MvnI CGCG 2 cut(s) 191, 287
MwoI GCNNNNNNNGC 2 cut(s) 156, 188
NaeI GCCGGC 1 cut(s) 184
NdeII GATC 5 cut(s) 66, 192, 220, 232, 256
NgoMIV GCCGGC 1 cut(s) 182
NlaIV GGNNCC 1 cut(s) 187
NmuCI GTSAC 1 cut(s) 206
NsbI TGCGCA 1 cut(s) 149
PdiI GCCGGC 1 cut(s) 184
PfeI GAWTC 1 cut(s) 168
PkrI GCNGC 3 cut(s) 93, 161, 181
PspN4I GGNNCC 1 cut(s) 187
PspPI GGNCC 1 cut(s) 267
PsuI RGATCY 1 cut(s) 66
RsaI GTAC 2 cut(s) 101, 134
RsaNI GTAC 2 cut(s) 100, 133
SalI GTCGAC 1 cut(s) 113
SaqAI TTAA 1 cut(s) 164
SatI GCNGC 3 cut(s) 92, 160, 180
Sau3AI GATC 5 cut(s) 66, 192, 220, 232, 256
Sau96I GGNCC 1 cut(s) 267
SetI ASST 5 cut(s) 146, 164, 219, 272, 280
SinI GGWCC 1 cut(s) 267
SmlI CTYRAG 2 cut(s) 79, 163
SmoI CTYRAG 2 cut(s) 79, 163
Sse9I AATT 3 cut(s) 13, 40, 95
SsiI CCGC 5 cut(s) 104, 123, 180, 189, 285
SspMI CTAG 1 cut(s) 156
TaqI TCGA 2 cut(s) 114, 219
TasI AATT 3 cut(s) 13, 40, 95
TatI WGTACW 1 cut(s) 132
TauI GCSGC 1 cut(s) 182
TfiI GAWTC 1 cut(s) 168
Tru1I TTAA 1 cut(s) 164
Tru9I TTAA 1 cut(s) 164
TscAI CASTG 2 cut(s) 57, 142
TseFI GTSAC 1 cut(s) 206
TseI GCWGC 2 cut(s) 91, 159
Tsp45I GTSAC 1 cut(s) 206
TspRI CASTG 2 cut(s) 57, 142
Vha464I CTTAAG 1 cut(s) 163
VpaK11BI GGWCC 1 cut(s) 267
XmiI GTMKAC 1 cut(s) 114
XspI CTAG 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.