Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007894.1

Orthogroup ID

OG0015753

Physical Location & Seq

Genomic Coordinates Reverse (-)

8176 .. 9513

Gene Structure 1338 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007894.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

atggccaccgtcttcggagccacttccgccgccatatcctcccggaaactccacctcccttcccctagatccctcccagggaggaagactggctttcttgtggttagatctgatgccggagttaacccgaatgctagagctcaccagaccgatcagttgagcaccaatgctgttgcgacaaaagctattgctcctgtgtatgtctatgtgaagtttttagctttttactgttatgcttttgttgtttttgctaaatttgattctgatatagttttgagatcacaggttttggagatggaattagaagaagagatggctagggatcccactgtatgtgtaatgggtgaagatgtgggtcgctatagaggatcgtacaaggtgcctggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004738 GO:0004739 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008270 GO:0008610 GO:0009058 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009856 GO:0009941 GO:0009987 GO:0010240 GO:0016053 GO:0016491 GO:0016624 GO:0016903 GO:0019752 GO:0022414 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032787 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045254 GO:0046394 GO:0046872 GO:0046914 GO:0048856 GO:0048868 GO:0051704 GO:0055114 GO:0071704 GO:0072330 GO:1901576 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00010 ko00020 ko00620 ko01100 ko01110 ko01120 ko01130 ko01200 ko04066 ko04922 ko05230 map00010 map00020 map00620 map01100 map01110 map01120 map01130 map01200 map04066 map04922 map05230

Pfam Domains

Protein Families

Transket_pyr Transketolase_C

Protein Analysis

129

Amino Acids

14.12

Weight (kDa)

8.97

Isoelectric Point (pI)

41.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015753)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0426281 RchiOBHm_Chr7g0210381
rosa_laevigata	RLG00000008534 RLG00000022487 RLG00000029835
rosa_multiflora	Rmu_sc0001913.1_g000033 Rmu_sc0007894.1_g000003
rosa_roxburghii	Rroxscaffold_1G00040390
rosa_rugosa	Rorug02G0466700 Rorug03G0118900 Rorug04G0140800
rosa_samantha	Rh2DG054500 Rh4BG387800 Rh4CG286500 Rh5AG015100 Rh5CG016200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	379
AciI	CCGC	2 cut(s)	27, 30
AclWI	GGATC	4 cut(s)	63, 317, 330, 376
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	254
AfaI	GTAC	1 cut(s)	374
AfiI	CCNNNNNNNGG	1 cut(s)	78
AjnI	CCWGG	2 cut(s)	76, 382
AluBI	AGCT	3 cut(s)	140, 185, 221
AluI	AGCT	3 cut(s)	140, 185, 221
Alw21I	GWGCWC	2 cut(s)	142, 164
AlwI	GGATC	4 cut(s)	63, 317, 330, 376
AoxI	GGCC	1 cut(s)	3
ApoI	RAATTY	1 cut(s)	254
AsuC2I	CCSGG	1 cut(s)	43
AsuHPI	GGTGA	2 cut(s)	134, 356
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	322
BanI	GGYRCC	1 cut(s)	379
BanII	GRGCYC	1 cut(s)	142
BbsI	GAAGAC	2 cut(s)	4, 92
Bbv12I	GWGCWC	2 cut(s)	142, 164
BccI	CCATC	2 cut(s)	289, 307
BciT130I	CCWGG	2 cut(s)	78, 384
BcnI	CCSGG	1 cut(s)	43
BfaI	CTAG	3 cut(s)	66, 135, 318
BfmI	CTRYAG	1 cut(s)	361
BglII	AGATCT	1 cut(s)	107
BisI	GCNGC	1 cut(s)	30
BlsI	GCNGC	1 cut(s)	31
Bme1390I	CCNGG	3 cut(s)	43, 78, 384
BmiI	GGNNCC	3 cut(s)	19, 324, 381
BmrFI	CCNGG	3 cut(s)	43, 78, 384
BmsI	GCATC	1 cut(s)	103
BpiI	GAAGAC	2 cut(s)	4, 92
BpuMI	CCSGG	1 cut(s)	43
BsaJI	CCNNGG	2 cut(s)	76, 77
BsaXI	ACNNNNNCTCC	2 cut(s)	39, 69
Bsc4I	CCNNNNNNNGG	1 cut(s)	78
Bse1I	ACTGG	1 cut(s)	94
BseBI	CCWGG	2 cut(s)	78, 384
BseDI	CCNNGG	2 cut(s)	76, 77
BseLI	CCNNNNNNNGG	1 cut(s)	78
BseNI	ACTGG	1 cut(s)	94
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	379
BsiHKAI	GWGCWC	2 cut(s)	142, 164
BsiSI	CCGG	2 cut(s)	43, 117
BslI	CCNNNNNNNGG	1 cut(s)	78
BsmI	GAATGC	1 cut(s)	136
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	2 cut(s)	142, 164
Bsp143I	GATC	6 cut(s)	68, 107, 151, 278, 322, 368
BspACI	CCGC	2 cut(s)	27, 30
BspANI	GGCC	1 cut(s)	5
BspLI	GGNNCC	3 cut(s)	19, 324, 381
BspPI	GGATC	4 cut(s)	63, 317, 330, 376
BspT107I	GGYRCC	1 cut(s)	379
BsrI	ACTGG	1 cut(s)	94
BssECI	CCNNGG	2 cut(s)	76, 77
BssMI	GATC	6 cut(s)	68, 107, 151, 278, 322, 368
Bst2UI	CCWGG	2 cut(s)	78, 384
Bst4CI	ACNGT	3 cut(s)	10, 230, 331
Bst6I	CTCTTC	1 cut(s)	303
BstKTI	GATC	6 cut(s)	71, 110, 154, 281, 325, 371
BstMBI	GATC	6 cut(s)	68, 107, 151, 278, 322, 368
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 182
BstNI	CCWGG	2 cut(s)	78, 384
BstSCI	CCNGG	3 cut(s)	41, 76, 382
BstSFI	CTRYAG	1 cut(s)	361
BstV2I	GAAGAC	2 cut(s)	4, 92
BstX2I	RGATCY	3 cut(s)	68, 107, 322
BstYI	RGATCY	3 cut(s)	68, 107, 322
BsuRI	GGCC	1 cut(s)	5
BtsIMutI	CAGTG	1 cut(s)	327
Csp6I	GTAC	1 cut(s)	373
CviJI	RGCY	7 cut(s)	5, 20, 93, 140, 185, 221, 317
CviKI_1	RGCY	7 cut(s)	5, 20, 93, 140, 185, 221, 317
CviQI	GTAC	1 cut(s)	373
DpnI	GATC	6 cut(s)	70, 109, 153, 280, 324, 370
DpnII	GATC	6 cut(s)	68, 107, 151, 278, 322, 368
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	303
EarI	CTCTTC	1 cut(s)	303
EciI	GGCGGA	1 cut(s)	16
Ecl136II	GAGCTC	1 cut(s)	140
Eco24I	GRGCYC	1 cut(s)	142
Eco53kI	GAGCTC	1 cut(s)	140
EcoICRI	GAGCTC	1 cut(s)	140
EcoRII	CCWGG	2 cut(s)	76, 382
EcoT38I	GRGCYC	1 cut(s)	142
FaiI	YATR	7 cut(s)	35, 201, 207, 234, 269, 334, 363
FalI	AAGNNNNNCTT	2 cut(s)	77, 109
Fnu4HI	GCNGC	1 cut(s)	30
FriOI	GRGCYC	1 cut(s)	142
Fsp4HI	GCNGC	1 cut(s)	30
FspBI	CTAG	3 cut(s)	66, 135, 318
GluI	GCNGC	1 cut(s)	30
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	43, 117
HincII	GTYRAC	1 cut(s)	124
HindII	GTYRAC	1 cut(s)	124
HinfI	GANTC	1 cut(s)	260
HpaI	GTTAAC	1 cut(s)	124
HpaII	CCGG	2 cut(s)	43, 117
HphI	GGTGA	2 cut(s)	134, 356
Hpy166II	GTNNAC	1 cut(s)	124
Hpy188I	TCNGA	3 cut(s)	17, 112, 265
Hpy8I	GTNNAC	1 cut(s)	124
HpyAV	CCTTC	1 cut(s)	69
HpyCH4III	ACNGT	3 cut(s)	10, 230, 331
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 182
KspAI	GTTAAC	1 cut(s)	124
Kzo9I	GATC	6 cut(s)	68, 107, 151, 278, 322, 368
LmnI	GCTCC	2 cut(s)	17, 196
LpnPI	CCDG	9 cut(s)	56, 63, 75, 90, 130, 158, 207, 269, 369
LweI	GCATC	1 cut(s)	103
MaeI	CTAG	3 cut(s)	66, 135, 318
MalI	GATC	6 cut(s)	70, 109, 153, 280, 324, 370
MboI	GATC	6 cut(s)	68, 107, 151, 278, 322, 368
MboII	GAAGA	5 cut(s)	4, 97, 317, 320, 359
MflI	RGATCY	3 cut(s)	68, 107, 322
MhlI	GDGCHC	2 cut(s)	142, 164
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	254, 299
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	5 cut(s)	49, 65, 75, 83, 359
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	123
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	43, 117
MspR9I	CCNGG	3 cut(s)	43, 78, 384
Mva1269I	GAATGC	1 cut(s)	136
MvaI	CCWGG	2 cut(s)	78, 384
MwoI	GCNNNNNNNGC	2 cut(s)	26, 182
NciI	CCSGG	1 cut(s)	43
NdeII	GATC	6 cut(s)	68, 107, 151, 278, 322, 368
NlaIV	GGNNCC	3 cut(s)	19, 324, 381
PasI	CCCWGGG	1 cut(s)	77
PctI	GAATGC	1 cut(s)	136
PfeI	GAWTC	1 cut(s)	260
PfoI	TCCNGGA	1 cut(s)	41
PkrI	GCNGC	1 cut(s)	31
Psp124BI	GAGCTC	1 cut(s)	142
Psp6I	CCWGG	2 cut(s)	76, 382
PspGI	CCWGG	2 cut(s)	76, 382
PspN4I	GGNNCC	3 cut(s)	19, 324, 381
PsuI	RGATCY	3 cut(s)	68, 107, 322
RsaI	GTAC	1 cut(s)	374
RsaNI	GTAC	1 cut(s)	373
SacI	GAGCTC	1 cut(s)	142
SaqAI	TTAA	1 cut(s)	123
SatI	GCNGC	1 cut(s)	30
Sau3AI	GATC	6 cut(s)	68, 107, 151, 278, 322, 368
ScrFI	CCNGG	3 cut(s)	43, 78, 384
SduI	GDGCHC	2 cut(s)	142, 164
SetI	ASST	6 cut(s)	57, 142, 187, 223, 288, 381
SfaNI	GCATC	1 cut(s)	103
SfcI	CTRYAG	1 cut(s)	361
Sse9I	AATT	2 cut(s)	254, 299
SsiI	CCGC	2 cut(s)	27, 30
SspMI	CTAG	3 cut(s)	66, 135, 318
SstI	GAGCTC	1 cut(s)	142
StyD4I	CCNGG	3 cut(s)	41, 76, 382
TaaI	ACNGT	3 cut(s)	10, 230, 331
TaqII	GACCGA	1 cut(s)	164
TasI	AATT	2 cut(s)	254, 299
TauI	GCSGC	1 cut(s)	32
TfiI	GAWTC	1 cut(s)	260
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TscAI	CASTG	1 cut(s)	334
TspRI	CASTG	1 cut(s)	334
XapI	RAATTY	1 cut(s)	254
XspI	CTAG	3 cut(s)	66, 135, 318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.