RchiOBHm_Chr5g0023271

Huntingtin-interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0014843
Physical Location & Seq
Forward (+)
17273003 .. 17273368
366 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30316

Sequence Viewer

Length: 366 bp
ATGGACCCGAAGAATAAATTTACAGGATCAAGGCAACAACAGAGCAAAGCCTTCGATAAACTCACTGACCGCGTCGAAGATCACCAGCTCGATTCGACCCGATTCCAGGAGGCCGTGGCTTCCATCGCTGCCACCTCAGAAGCCAATTTGGAAGCTATGATAAAGAGGGAGAAAGAATTGGCTACTCTAAAGATCAATCCACACGATGTTGAGATAATTGTCATCAACATGTTTCTGGGTTTGAATTGGAACAGTGAGGCAGGAAGTGAGTTTTTAAGGATTTTGATAATCACCTCCTACTTGCTTCTCGTTTCTTCTTTCTTAGTTTTCTTCATTTCAATCATCTGTCCCTTCGTACATTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.73

Weight (kDa)

5.55

Isoelectric Point (pI)

39.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 72
AciI CCGC 1 cut(s) 70
AclWI GGATC 1 cut(s) 34
AcsI RAATTY 1 cut(s) 17
AfaI GTAC 1 cut(s) 357
AfiI CCNNNNNNNGG 1 cut(s) 106
AflIII ACRYGT 1 cut(s) 228
AgsI TTSAA 2 cut(s) 244, 339
AjnI CCWGG 1 cut(s) 105
AluBI AGCT 2 cut(s) 88, 155
AluI AGCT 2 cut(s) 88, 155
AlwI GGATC 1 cut(s) 34
AoxI GGCC 1 cut(s) 111
ApeKI GCWGC 1 cut(s) 128
ApoI RAATTY 1 cut(s) 17
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 2 cut(s) 74, 283
AvaII GGWCC 1 cut(s) 4
BbvI GCAGC 1 cut(s) 115
BccI CCATC 1 cut(s) 131
BceAI ACGGC 1 cut(s) 98
BcgI CGANNNNNNTGC 2 cut(s) 34, 68
BciT130I CCWGG 1 cut(s) 107
BisI GCNGC 1 cut(s) 129
BlsI GCNGC 1 cut(s) 130
Bme1390I CCNGG 1 cut(s) 107
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 107
BsaJI CCNNGG 1 cut(s) 114
Bsc4I CCNNNNNNNGG 1 cut(s) 106
BseBI CCWGG 1 cut(s) 107
BseDI CCNNGG 1 cut(s) 114
BseLI CCNNNNNNNGG 1 cut(s) 106
BseMII CTCAG 1 cut(s) 150
BseXI GCAGC 1 cut(s) 115
Bsh1236I CGCG 1 cut(s) 72
BshFI GGCC 1 cut(s) 113
BslFI GGGAC 1 cut(s) 333
BslI CCNNNNNNNGG 1 cut(s) 106
BsmFI GGGAC 1 cut(s) 333
BsnI GGCC 1 cut(s) 113
Bsp143I GATC 3 cut(s) 26, 79, 192
BspACI CCGC 1 cut(s) 70
BspANI GGCC 1 cut(s) 113
BspCNI CTCAG 1 cut(s) 149
BspFNI CGCG 1 cut(s) 72
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 34
BssECI CCNNGG 1 cut(s) 114
BssMI GATC 3 cut(s) 26, 79, 192
Bst2UI CCWGG 1 cut(s) 107
Bst4CI ACNGT 1 cut(s) 254
BstDEI CTNAG 2 cut(s) 136, 322
BstDSI CCRYGG 1 cut(s) 114
BstFNI CGCG 1 cut(s) 72
BstKTI GATC 3 cut(s) 29, 82, 195
BstMBI GATC 3 cut(s) 26, 79, 192
BstMWI GCNNNNNNNGC 1 cut(s) 125
BstNI CCWGG 1 cut(s) 107
BstNSI RCATGY 1 cut(s) 232
BstSCI CCNGG 1 cut(s) 105
BstUI CGCG 1 cut(s) 72
BstV1I GCAGC 1 cut(s) 115
BsuRI GGCC 1 cut(s) 113
BtgI CCRYGG 1 cut(s) 114
BtgZI GCGATG 1 cut(s) 109
BtsIMutI CAGTG 2 cut(s) 63, 259
Cfr13I GGNCC 1 cut(s) 4
CseI GACGC 1 cut(s) 61
Csp6I GTAC 1 cut(s) 356
CviAII CATG 1 cut(s) 229
CviJI RGCY 7 cut(s) 50, 88, 113, 119, 143, 155, 182
CviKI_1 RGCY 7 cut(s) 50, 88, 113, 119, 143, 155, 182
CviQI GTAC 1 cut(s) 356
DdeI CTNAG 2 cut(s) 136, 322
DpnI GATC 3 cut(s) 28, 81, 194
DpnII GATC 3 cut(s) 26, 79, 192
Eco47I GGWCC 1 cut(s) 4
EcoRII CCWGG 1 cut(s) 105
FaeI CATG 1 cut(s) 232
FaiI YATR 2 cut(s) 158, 230
FaqI GGGAC 1 cut(s) 333
FatI CATG 1 cut(s) 228
Fnu4HI GCNGC 1 cut(s) 129
Fsp4HI GCNGC 1 cut(s) 129
GluI GCNGC 1 cut(s) 129
HaeIII GGCC 1 cut(s) 113
HgaI GACGC 1 cut(s) 61
Hin1II CATG 1 cut(s) 232
HinfI GANTC 2 cut(s) 92, 102
HphI GGTGA 2 cut(s) 74, 283
Hpy188I TCNGA 1 cut(s) 139
Hpy188III TCNNGA 1 cut(s) 363
Hpy99I CGWCG 1 cut(s) 77
HpyAV CCTTC 2 cut(s) 61, 361
HpyCH4III ACNGT 1 cut(s) 254
HpyF10VI GCNNNNNNNGC 1 cut(s) 125
HpyF3I CTNAG 2 cut(s) 136, 322
Hsp92II CATG 1 cut(s) 232
Kzo9I GATC 3 cut(s) 26, 79, 192
LpnPI CCDG 6 cut(s) 9, 92, 98, 119, 221, 246
Lsp1109I GCAGC 1 cut(s) 115
MalI GATC 3 cut(s) 28, 81, 194
MboI GATC 3 cut(s) 26, 79, 192
MboII GAAGA 4 cut(s) 22, 89, 306, 322
MluCI AATT 5 cut(s) 17, 145, 176, 216, 244
MnlI CCTC 5 cut(s) 103, 145, 159, 250, 304
MseI TTAA 1 cut(s) 275
MslI CAYNNNNRTG 1 cut(s) 227
MspR9I CCNGG 1 cut(s) 107
MvaI CCWGG 1 cut(s) 107
MvnI CGCG 1 cut(s) 72
MwoI GCNNNNNNNGC 1 cut(s) 125
NdeII GATC 3 cut(s) 26, 79, 192
NlaIII CATG 1 cut(s) 232
NlaIV GGNNCC 1 cut(s) 6
NspI RCATGY 1 cut(s) 232
PciI ACATGT 1 cut(s) 228
PfeI GAWTC 2 cut(s) 92, 102
PflFI GACNNNGTC 1 cut(s) 71
PfoI TCCNGGA 1 cut(s) 105
PkrI GCNGC 1 cut(s) 130
PscI ACATGT 1 cut(s) 228
Psp6I CCWGG 1 cut(s) 105
PspGI CCWGG 1 cut(s) 105
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 4
PsyI GACNNNGTC 1 cut(s) 71
RsaI GTAC 1 cut(s) 357
RsaNI GTAC 1 cut(s) 356
RseI CAYNNNNRTG 1 cut(s) 227
SaqAI TTAA 1 cut(s) 275
SatI GCNGC 1 cut(s) 129
Sau3AI GATC 3 cut(s) 26, 79, 192
Sau96I GGNCC 1 cut(s) 4
ScrFI CCNGG 1 cut(s) 107
SetI ASST 4 cut(s) 90, 137, 157, 296
SinI GGWCC 1 cut(s) 4
SmiMI CAYNNNNRTG 1 cut(s) 227
Sse9I AATT 5 cut(s) 17, 145, 176, 216, 244
SsiI CCGC 1 cut(s) 70
StyD4I CCNGG 1 cut(s) 105
TaaI ACNGT 1 cut(s) 254
TaqI TCGA 4 cut(s) 54, 75, 90, 95
TasI AATT 5 cut(s) 17, 145, 176, 216, 244
TfiI GAWTC 2 cut(s) 92, 102
Tru1I TTAA 1 cut(s) 275
Tru9I TTAA 1 cut(s) 275
TscAI CASTG 2 cut(s) 70, 259
TseI GCWGC 1 cut(s) 128
TspDTI ATGAA 1 cut(s) 322
TspRI CASTG 2 cut(s) 70, 259
Tth111I GACNNNGTC 1 cut(s) 71
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 1 cut(s) 17
XceI RCATGY 1 cut(s) 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.