Rmu_sc0002416.1_g000019

Huntingtin-interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002416.1
OG0014843
Physical Location & Seq
Forward (+)
67032 .. 68758
1727 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002416.1_g000019.1.cds

Sequence Viewer

Length: 420 bp
atgggttgcttagaggcgtggaattctgaggaccgttatgtagtgcttgtgagtgattcacaatttgacaatggaggagacccgattacgttttggttgaggggtctgtttttggcttctggttctttggaaggaattgataggatcgaggactccaaggacttgcagcaacagagcaaagccttcgataagctcactgaccgcgtcgaagatcgccagcttgattcaacacgattccagaaggccatggcttccattgctgccacctcagaagcctatttggaagctatgagaaagagggagaaagaattgggtactgtgaagatcaatccaagcgatgttgagataattgccatcaatatgttgttgggtttgaattggaacagtgaggcaggaagtgagtttttaaggaaattgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

15.67

Weight (kDa)

4.66

Isoelectric Point (pI)

44.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 204
AciI CCGC 1 cut(s) 202
AclWI GGATC 1 cut(s) 152
AcsI RAATTY 1 cut(s) 22
AfaI GTAC 1 cut(s) 316
AgsI TTSAA 2 cut(s) 228, 376
AluBI AGCT 3 cut(s) 193, 220, 287
AluI AGCT 3 cut(s) 193, 220, 287
Alw26I GTCTC 1 cut(s) 72
AlwI GGATC 1 cut(s) 152
AoxI GGCC 1 cut(s) 243
ApeKI GCWGC 2 cut(s) 166, 260
ApoI RAATTY 1 cut(s) 22
AspS9I GGNCC 1 cut(s) 31
AvaII GGWCC 1 cut(s) 31
BbvI GCAGC 2 cut(s) 178, 247
BccI CCATC 1 cut(s) 362
BcgI CGANNNNNNTGC 2 cut(s) 166, 200
BcoDI GTCTC 1 cut(s) 72
BisI GCNGC 2 cut(s) 167, 261
BlsI GCNGC 2 cut(s) 168, 262
Bme18I GGWCC 1 cut(s) 31
BmgT120I GGNCC 1 cut(s) 31
BsaI GGTCTC 1 cut(s) 72
BsaJI CCNNGG 2 cut(s) 156, 246
Bse3DI GCAATG 1 cut(s) 255
BseDI CCNNGG 2 cut(s) 156, 246
BseMI GCAATG 1 cut(s) 255
BseMII CTCAG 2 cut(s) 18, 282
BseRI GAGGAG 1 cut(s) 90
BseXI GCAGC 2 cut(s) 178, 247
Bsh1236I CGCG 1 cut(s) 204
BshFI GGCC 1 cut(s) 245
BsmAI GTCTC 1 cut(s) 72
BsnI GGCC 1 cut(s) 245
Bso31I GGTCTC 1 cut(s) 72
Bsp143I GATC 3 cut(s) 144, 211, 324
Bsp19I CCATGG 1 cut(s) 246
BspACI CCGC 1 cut(s) 202
BspANI GGCC 1 cut(s) 245
BspCNI CTCAG 2 cut(s) 19, 281
BspFNI CGCG 1 cut(s) 204
BspPI GGATC 1 cut(s) 152
BspTNI GGTCTC 1 cut(s) 72
BsrDI GCAATG 1 cut(s) 255
BssECI CCNNGG 2 cut(s) 156, 246
BssMI GATC 3 cut(s) 144, 211, 324
BssT1I CCWWGG 2 cut(s) 156, 246
Bst4CI ACNGT 3 cut(s) 35, 319, 386
BstC8I GCNNGC 1 cut(s) 218
BstDEI CTNAG 3 cut(s) 10, 27, 268
BstDSI CCRYGG 1 cut(s) 246
BstFNI CGCG 1 cut(s) 204
BstKTI GATC 3 cut(s) 147, 214, 327
BstMAI GTCTC 1 cut(s) 72
BstMBI GATC 3 cut(s) 144, 211, 324
BstMWI GCNNNNNNNGC 1 cut(s) 257
BstUI CGCG 1 cut(s) 204
BstV1I GCAGC 2 cut(s) 178, 247
BsuRI GGCC 1 cut(s) 245
BtgI CCRYGG 1 cut(s) 246
BtgZI GCGATG 1 cut(s) 351
BtsIMutI CAGTG 2 cut(s) 195, 391
Cac8I GCNNGC 1 cut(s) 218
Cfr13I GGNCC 1 cut(s) 31
CseI GACGC 1 cut(s) 193
Csp6I GTAC 1 cut(s) 315
CviAII CATG 1 cut(s) 247
CviJI RGCY 8 cut(s) 116, 182, 193, 220, 245, 251, 275, 287
CviKI_1 RGCY 8 cut(s) 116, 182, 193, 220, 245, 251, 275, 287
CviQI GTAC 1 cut(s) 315
DdeI CTNAG 3 cut(s) 10, 27, 268
DpnI GATC 3 cut(s) 146, 213, 326
DpnII GATC 3 cut(s) 144, 211, 324
Eco130I CCWWGG 2 cut(s) 156, 246
Eco31I GGTCTC 1 cut(s) 72
Eco47I GGWCC 1 cut(s) 31
EcoRI GAATTC 1 cut(s) 22
EcoT14I CCWWGG 2 cut(s) 156, 246
ErhI CCWWGG 2 cut(s) 156, 246
FaeI CATG 1 cut(s) 250
FaiI YATR 4 cut(s) 39, 248, 290, 362
FatI CATG 1 cut(s) 246
Fnu4HI GCNGC 2 cut(s) 167, 261
Fsp4HI GCNGC 2 cut(s) 167, 261
GluI GCNGC 2 cut(s) 167, 261
HaeIII GGCC 1 cut(s) 245
HgaI GACGC 1 cut(s) 193
Hin1II CATG 1 cut(s) 250
HinfI GANTC 4 cut(s) 56, 152, 224, 234
Hpy188I TCNGA 2 cut(s) 28, 271
Hpy188III TCNNGA 1 cut(s) 238
Hpy99I CGWCG 1 cut(s) 209
HpyAV CCTTC 3 cut(s) 125, 193, 235
HpyCH4III ACNGT 3 cut(s) 35, 319, 386
HpyCH4IV ACGT 1 cut(s) 89
HpyCH4V TGCA 1 cut(s) 166
HpyF10VI GCNNNNNNNGC 1 cut(s) 257
HpyF3I CTNAG 3 cut(s) 10, 27, 268
HpySE526I ACGT 1 cut(s) 89
Hsp92II CATG 1 cut(s) 250
Kzo9I GATC 3 cut(s) 144, 211, 324
LpnPI CCDG 4 cut(s) 105, 230, 251, 378
Lsp1109I GCAGC 2 cut(s) 178, 247
MaeII ACGT 1 cut(s) 89
MalI GATC 3 cut(s) 146, 213, 326
MboI GATC 3 cut(s) 144, 211, 324
MboII GAAGA 2 cut(s) 221, 334
MluCI AATT 7 cut(s) 22, 62, 135, 308, 348, 376, 413
MlyI GAGTC 1 cut(s) 146
MnlI CCTC 8 cut(s) 7, 22, 68, 93, 142, 277, 291, 382
MseI TTAA 1 cut(s) 407
MslI CAYNNNNRTG 1 cut(s) 359
MvnI CGCG 1 cut(s) 204
MwoI GCNNNNNNNGC 1 cut(s) 257
NcoI CCATGG 1 cut(s) 246
NdeII GATC 3 cut(s) 144, 211, 324
NlaIII CATG 1 cut(s) 250
PfeI GAWTC 3 cut(s) 56, 224, 234
PflFI GACNNNGTC 1 cut(s) 203
PkrI GCNGC 2 cut(s) 168, 262
PleI GAGTC 1 cut(s) 146
PpsI GAGTC 1 cut(s) 146
PspPI GGNCC 1 cut(s) 31
PsyI GACNNNGTC 1 cut(s) 203
RsaI GTAC 1 cut(s) 316
RsaNI GTAC 1 cut(s) 315
RseI CAYNNNNRTG 1 cut(s) 359
SaqAI TTAA 1 cut(s) 407
SatI GCNGC 2 cut(s) 167, 261
Sau3AI GATC 3 cut(s) 144, 211, 324
Sau96I GGNCC 1 cut(s) 31
SchI GAGTC 1 cut(s) 146
SetI ASST 5 cut(s) 92, 195, 222, 269, 289
SinI GGWCC 1 cut(s) 31
SmiMI CAYNNNNRTG 1 cut(s) 359
Sse9I AATT 7 cut(s) 22, 62, 135, 308, 348, 376, 413
SsiI CCGC 1 cut(s) 202
StyI CCWWGG 2 cut(s) 156, 246
TaaI ACNGT 3 cut(s) 35, 319, 386
TaiI ACGT 1 cut(s) 92
TaqI TCGA 3 cut(s) 147, 186, 207
TasI AATT 7 cut(s) 22, 62, 135, 308, 348, 376, 413
TfiI GAWTC 3 cut(s) 56, 224, 234
Tru1I TTAA 1 cut(s) 407
Tru9I TTAA 1 cut(s) 407
TscAI CASTG 2 cut(s) 202, 391
TseI GCWGC 2 cut(s) 166, 260
TspRI CASTG 2 cut(s) 202, 391
Tth111I GACNNNGTC 1 cut(s) 203
VpaK11BI GGWCC 1 cut(s) 31
XapI RAATTY 1 cut(s) 22
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.