Rmu_sc0011008.1_g000001

Huntingtin-interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011008.1
OG0014843
Physical Location & Seq
Forward (+)
44 .. 1865
1822 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011008.1_g000001.1.cds

Sequence Viewer

Length: 399 bp
atgcaagactatgcgtttcaacttttctctttggggactgtccgaagtgaatcctttcggttttgggaaggtgatccagatagcattagctcgccggttcttagagcaagttcatccgtgggtcatcaggactccaaggacttgcagcaacagagcaaagcttttgataagctcactgaccgcgtcgaagatcgccagcttgattcaacacgattccagaaggccatggcttccattgctgccacctcagaagcctatttggaagctatgagaaagagggagaaagaattgggtactgtgaagatcaatccacgcgatgttgagataattgccatcaatatgttgttgggtttgaattggaacagtgaggcaggaagtgagtttttaaggaaattgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

14.98

Weight (kDa)

5.47

Isoelectric Point (pI)

50.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 183, 315
AciI CCGC 1 cut(s) 181
AclWI GGATC 1 cut(s) 68
AfaI GTAC 1 cut(s) 295
AgsI TTSAA 3 cut(s) 20, 207, 355
AluBI AGCT 5 cut(s) 90, 161, 172, 199, 266
AluI AGCT 5 cut(s) 90, 161, 172, 199, 266
AlwI GGATC 1 cut(s) 68
AoxI GGCC 1 cut(s) 222
ApeKI GCWGC 2 cut(s) 145, 239
Asp700I GAANNNNTTC 1 cut(s) 54
AsuHPI GGTGA 1 cut(s) 83
BbvI GCAGC 2 cut(s) 157, 226
BccI CCATC 1 cut(s) 341
BisI GCNGC 2 cut(s) 146, 240
BlsI GCNGC 2 cut(s) 147, 241
BsaJI CCNNGG 3 cut(s) 117, 135, 225
Bse118I RCCGGY 1 cut(s) 94
Bse3DI GCAATG 1 cut(s) 234
BseDI CCNNGG 3 cut(s) 117, 135, 225
BseGI GGATG 1 cut(s) 113
BseMI GCAATG 1 cut(s) 234
BseMII CTCAG 1 cut(s) 261
BseXI GCAGC 2 cut(s) 157, 226
Bsh1236I CGCG 2 cut(s) 183, 315
BshFI GGCC 1 cut(s) 224
BsiSI CCGG 1 cut(s) 95
BslFI GGGAC 1 cut(s) 49
BsmFI GGGAC 1 cut(s) 49
BsnI GGCC 1 cut(s) 224
Bsp143I GATC 3 cut(s) 73, 190, 303
Bsp19I CCATGG 1 cut(s) 225
BspACI CCGC 1 cut(s) 181
BspANI GGCC 1 cut(s) 224
BspCNI CTCAG 1 cut(s) 260
BspFNI CGCG 2 cut(s) 183, 315
BspPI GGATC 1 cut(s) 68
BsrDI GCAATG 1 cut(s) 234
BsrFI RCCGGY 1 cut(s) 94
BssAI RCCGGY 1 cut(s) 94
BssECI CCNNGG 3 cut(s) 117, 135, 225
BssMI GATC 3 cut(s) 73, 190, 303
BssT1I CCWWGG 2 cut(s) 135, 225
Bst4CI ACNGT 3 cut(s) 40, 298, 365
BstC8I GCNNGC 2 cut(s) 92, 197
BstDEI CTNAG 2 cut(s) 101, 247
BstDSI CCRYGG 2 cut(s) 117, 225
BstF5I GGATG 1 cut(s) 113
BstFNI CGCG 2 cut(s) 183, 315
BstKTI GATC 3 cut(s) 76, 193, 306
BstMBI GATC 3 cut(s) 73, 190, 303
BstMWI GCNNNNNNNGC 1 cut(s) 236
BstUI CGCG 2 cut(s) 183, 315
BstV1I GCAGC 2 cut(s) 157, 226
BsuRI GGCC 1 cut(s) 224
BtgI CCRYGG 2 cut(s) 117, 225
BtgZI GCGATG 1 cut(s) 330
BtsCI GGATG 1 cut(s) 113
BtsIMutI CAGTG 2 cut(s) 174, 370
Cac8I GCNNGC 2 cut(s) 92, 197
Cfr10I RCCGGY 1 cut(s) 94
CseI GACGC 1 cut(s) 172
Csp6I GTAC 1 cut(s) 294
CviAII CATG 1 cut(s) 226
CviJI RGCY 8 cut(s) 90, 161, 172, 199, 224, 230, 254, 266
CviKI_1 RGCY 8 cut(s) 90, 161, 172, 199, 224, 230, 254, 266
CviQI GTAC 1 cut(s) 294
DdeI CTNAG 2 cut(s) 101, 247
DpnI GATC 3 cut(s) 75, 192, 305
DpnII GATC 3 cut(s) 73, 190, 303
Eco130I CCWWGG 2 cut(s) 135, 225
EcoT14I CCWWGG 2 cut(s) 135, 225
ErhI CCWWGG 2 cut(s) 135, 225
FaeI CATG 1 cut(s) 229
FaiI YATR 4 cut(s) 12, 227, 269, 341
FaqI GGGAC 1 cut(s) 49
FatI CATG 1 cut(s) 225
Fnu4HI GCNGC 2 cut(s) 146, 240
FokI GGATG 1 cut(s) 100
Fsp4HI GCNGC 2 cut(s) 146, 240
GluI GCNGC 2 cut(s) 146, 240
HaeIII GGCC 1 cut(s) 224
HapII CCGG 1 cut(s) 95
HgaI GACGC 1 cut(s) 172
Hin1II CATG 1 cut(s) 229
HindIII AAGCTT 1 cut(s) 159
HinfI GANTC 4 cut(s) 50, 131, 203, 213
HpaII CCGG 1 cut(s) 95
HphI GGTGA 1 cut(s) 83
Hpy188I TCNGA 2 cut(s) 44, 250
Hpy188III TCNNGA 3 cut(s) 77, 128, 217
Hpy99I CGWCG 1 cut(s) 188
HpyAV CCTTC 2 cut(s) 62, 214
HpyCH4III ACNGT 3 cut(s) 40, 298, 365
HpyCH4V TGCA 2 cut(s) 4, 145
HpyF10VI GCNNNNNNNGC 1 cut(s) 236
HpyF3I CTNAG 2 cut(s) 101, 247
Hsp92II CATG 1 cut(s) 229
Kzo9I GATC 3 cut(s) 73, 190, 303
LpnPI CCDG 6 cut(s) 90, 108, 113, 209, 230, 357
Lsp1109I GCAGC 2 cut(s) 157, 226
MalI GATC 3 cut(s) 75, 192, 305
MboI GATC 3 cut(s) 73, 190, 303
MboII GAAGA 2 cut(s) 200, 313
MluCI AATT 4 cut(s) 287, 327, 355, 392
MlyI GAGTC 1 cut(s) 125
MnlI CCTC 3 cut(s) 256, 270, 361
MroXI GAANNNNTTC 1 cut(s) 54
MseI TTAA 1 cut(s) 386
MslI CAYNNNNRTG 1 cut(s) 338
MspI CCGG 1 cut(s) 95
MvnI CGCG 2 cut(s) 183, 315
MwoI GCNNNNNNNGC 1 cut(s) 236
NcoI CCATGG 1 cut(s) 225
NdeII GATC 3 cut(s) 73, 190, 303
NlaIII CATG 1 cut(s) 229
PdmI GAANNNNTTC 1 cut(s) 54
PfeI GAWTC 3 cut(s) 50, 203, 213
PflFI GACNNNGTC 1 cut(s) 182
PkrI GCNGC 2 cut(s) 147, 241
PleI GAGTC 1 cut(s) 125
PpsI GAGTC 1 cut(s) 125
PsyI GACNNNGTC 1 cut(s) 182
RsaI GTAC 1 cut(s) 295
RsaNI GTAC 1 cut(s) 294
RseI CAYNNNNRTG 1 cut(s) 338
SaqAI TTAA 1 cut(s) 386
SatI GCNGC 2 cut(s) 146, 240
Sau3AI GATC 3 cut(s) 73, 190, 303
SchI GAGTC 1 cut(s) 125
SetI ASST 7 cut(s) 73, 92, 163, 174, 201, 248, 268
SmiMI CAYNNNNRTG 1 cut(s) 338
Sse9I AATT 4 cut(s) 287, 327, 355, 392
SsiI CCGC 1 cut(s) 181
StyI CCWWGG 2 cut(s) 135, 225
TaaI ACNGT 3 cut(s) 40, 298, 365
TaqI TCGA 1 cut(s) 186
TasI AATT 4 cut(s) 287, 327, 355, 392
TfiI GAWTC 3 cut(s) 50, 203, 213
Tru1I TTAA 1 cut(s) 386
Tru9I TTAA 1 cut(s) 386
TscAI CASTG 2 cut(s) 181, 370
TseI GCWGC 2 cut(s) 145, 239
TspDTI ATGAA 1 cut(s) 102
TspGWI ACGGA 1 cut(s) 106
TspRI CASTG 2 cut(s) 181, 370
Tth111I GACNNNGTC 1 cut(s) 182
XmnI GAANNNNTTC 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.