Rh7DG427000

Huntingtin-interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0014843
Physical Location & Seq
Reverse (-)
60370662 .. 60371677
1016 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG427000.1

Sequence Viewer

Length: 327 bp
ATGAGCATTCAGATCGAGGACTCCAAGGACTTGCAGCAACAGAGCAAAGCCTTCGATAAGCTCACTGACCGCGTCGAAGATCGCCAGGTCGATTCGACACGATTCCAGAAGGCCCTAGCTTCCATTGCTGCCACCTTAGAAGTCGATTTGGAAGCTGTGAGAAAGAGGGAGAAAGAATTGGGTACTGTGAAGATCAATCCACGCGATGTTGAGATAATTGCCATCAATATGTTGCTGGGTTTGAATTGGAACAGTGAGGCAGGAACTTCCAAGGATTATGTTGGTGCAAATTGGATTGCAGTTTCCTTAATTGTGAGAAAGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

12.13

Weight (kDa)

5.47

Isoelectric Point (pI)

32.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 72, 204
AciI CCGC 1 cut(s) 70
AfaI GTAC 1 cut(s) 184
AgsI TTSAA 1 cut(s) 244
AjnI CCWGG 1 cut(s) 84
AluBI AGCT 3 cut(s) 61, 119, 155
AluI AGCT 3 cut(s) 61, 119, 155
AoxI GGCC 1 cut(s) 111
ApeKI GCWGC 2 cut(s) 34, 128
AspS9I GGNCC 1 cut(s) 112
BbvI GCAGC 2 cut(s) 46, 115
BccI CCATC 1 cut(s) 230
BcgI CGANNNNNNTGC 3 cut(s) 29, 34, 68
BciT130I CCWGG 1 cut(s) 86
BfaI CTAG 1 cut(s) 116
BisI GCNGC 2 cut(s) 35, 129
BlsI GCNGC 2 cut(s) 36, 130
Bme1390I CCNGG 1 cut(s) 86
BmgT120I GGNCC 1 cut(s) 112
BmrFI CCNGG 1 cut(s) 86
BsaJI CCNNGG 2 cut(s) 24, 270
Bse3DI GCAATG 1 cut(s) 123
BseBI CCWGG 1 cut(s) 86
BseDI CCNNGG 2 cut(s) 24, 270
BseMI GCAATG 1 cut(s) 123
BseXI GCAGC 2 cut(s) 46, 115
BseYI CCCAGC 1 cut(s) 235
Bsh1236I CGCG 2 cut(s) 72, 204
BshFI GGCC 1 cut(s) 113
BsmI GAATGC 1 cut(s) 6
BsnI GGCC 1 cut(s) 113
Bsp143I GATC 3 cut(s) 12, 79, 192
BspACI CCGC 1 cut(s) 70
BspANI GGCC 1 cut(s) 113
BspFNI CGCG 2 cut(s) 72, 204
BsrDI GCAATG 1 cut(s) 123
BssECI CCNNGG 2 cut(s) 24, 270
BssMI GATC 3 cut(s) 12, 79, 192
BssT1I CCWWGG 2 cut(s) 24, 270
Bst2UI CCWGG 1 cut(s) 86
Bst4CI ACNGT 2 cut(s) 187, 254
BstDEI CTNAG 1 cut(s) 136
BstFNI CGCG 2 cut(s) 72, 204
BstKTI GATC 3 cut(s) 15, 82, 195
BstMBI GATC 3 cut(s) 12, 79, 192
BstMWI GCNNNNNNNGC 1 cut(s) 125
BstNI CCWGG 1 cut(s) 86
BstSCI CCNGG 1 cut(s) 84
BstUI CGCG 2 cut(s) 72, 204
BstV1I GCAGC 2 cut(s) 46, 115
BsuRI GGCC 1 cut(s) 113
BtgZI GCGATG 1 cut(s) 219
BtsIMutI CAGTG 2 cut(s) 63, 259
Cfr13I GGNCC 1 cut(s) 112
CseI GACGC 1 cut(s) 61
Csp6I GTAC 1 cut(s) 183
CviJI RGCY 5 cut(s) 50, 61, 113, 119, 155
CviKI_1 RGCY 5 cut(s) 50, 61, 113, 119, 155
CviQI GTAC 1 cut(s) 183
DdeI CTNAG 1 cut(s) 136
DpnI GATC 3 cut(s) 14, 81, 194
DpnII GATC 3 cut(s) 12, 79, 192
Eco130I CCWWGG 2 cut(s) 24, 270
EcoO109I RGGNCCY 1 cut(s) 112
EcoRII CCWGG 1 cut(s) 84
EcoT14I CCWWGG 2 cut(s) 24, 270
ErhI CCWWGG 2 cut(s) 24, 270
FaiI YATR 2 cut(s) 230, 279
Fnu4HI GCNGC 2 cut(s) 35, 129
Fsp4HI GCNGC 2 cut(s) 35, 129
FspBI CTAG 1 cut(s) 116
GluI GCNGC 2 cut(s) 35, 129
GsaI CCCAGC 1 cut(s) 239
HaeIII GGCC 1 cut(s) 113
HgaI GACGC 1 cut(s) 61
HinfI GANTC 3 cut(s) 20, 92, 102
Hpy188I TCNGA 1 cut(s) 12
Hpy188III TCNNGA 1 cut(s) 106
Hpy99I CGWCG 1 cut(s) 77
HpyAV CCTTC 2 cut(s) 61, 103
HpyCH4III ACNGT 2 cut(s) 187, 254
HpyCH4V TGCA 3 cut(s) 34, 287, 299
HpyF10VI GCNNNNNNNGC 1 cut(s) 125
HpyF3I CTNAG 1 cut(s) 136
Kzo9I GATC 3 cut(s) 12, 79, 192
LpnPI CCDG 5 cut(s) 71, 98, 119, 221, 246
Lsp1109I GCAGC 2 cut(s) 46, 115
MaeI CTAG 1 cut(s) 116
MalI GATC 3 cut(s) 14, 81, 194
MboI GATC 3 cut(s) 12, 79, 192
MboII GAAGA 2 cut(s) 89, 202
MluCI AATT 5 cut(s) 176, 216, 244, 289, 309
MlyI GAGTC 1 cut(s) 14
MnlI CCTC 3 cut(s) 10, 159, 250
MseI TTAA 1 cut(s) 308
MslI CAYNNNNRTG 1 cut(s) 227
MspR9I CCNGG 1 cut(s) 86
Mva1269I GAATGC 1 cut(s) 6
MvaI CCWGG 1 cut(s) 86
MvnI CGCG 2 cut(s) 72, 204
MwoI GCNNNNNNNGC 1 cut(s) 125
NdeII GATC 3 cut(s) 12, 79, 192
PctI GAATGC 1 cut(s) 6
PfeI GAWTC 2 cut(s) 92, 102
PflFI GACNNNGTC 1 cut(s) 71
PkrI GCNGC 2 cut(s) 36, 130
PleI GAGTC 1 cut(s) 14
PpsI GAGTC 1 cut(s) 14
Psp6I CCWGG 1 cut(s) 84
PspFI CCCAGC 1 cut(s) 235
PspGI CCWGG 1 cut(s) 84
PspPI GGNCC 1 cut(s) 112
PsyI GACNNNGTC 1 cut(s) 71
RsaI GTAC 1 cut(s) 184
RsaNI GTAC 1 cut(s) 183
RseI CAYNNNNRTG 1 cut(s) 227
SaqAI TTAA 1 cut(s) 308
SatI GCNGC 2 cut(s) 35, 129
Sau3AI GATC 3 cut(s) 12, 79, 192
Sau96I GGNCC 1 cut(s) 112
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 1 cut(s) 86
SetI ASST 5 cut(s) 63, 90, 121, 137, 157
SmiMI CAYNNNNRTG 1 cut(s) 227
Sse9I AATT 5 cut(s) 176, 216, 244, 289, 309
SsiI CCGC 1 cut(s) 70
SspMI CTAG 1 cut(s) 116
StyD4I CCNGG 1 cut(s) 84
StyI CCWWGG 2 cut(s) 24, 270
TaaI ACNGT 2 cut(s) 187, 254
TaqI TCGA 6 cut(s) 15, 54, 75, 90, 95, 144
TasI AATT 5 cut(s) 176, 216, 244, 289, 309
TfiI GAWTC 2 cut(s) 92, 102
Tru1I TTAA 1 cut(s) 308
Tru9I TTAA 1 cut(s) 308
TscAI CASTG 2 cut(s) 70, 259
TseI GCWGC 2 cut(s) 34, 128
TspRI CASTG 2 cut(s) 70, 259
Tth111I GACNNNGTC 1 cut(s) 71
XspI CTAG 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.