Rh6AG411400

Huntingtin-interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0014843
Physical Location & Seq
Reverse (-)
60815932 .. 60816282
351 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG411400.1

Sequence Viewer

Length: 351 bp
ATGGAGCCACCAATATCACTACAGTCTCTCAGATCGGACCCACCCTTCACTGACCCAAAGAAGGAATTGATAGGATCGAGGACTCCCAAGGACTTGCAGCAACAGAGCAAAGCCTTCGATAAGCTCACTGACCGCGTCGAAGATCGCCAGCTCGATTCGACACGATTCCAGAAGGCCATGGCTTCCATTGCTGCCACCTCAGAAGTCGATTTGGAAGCTATGAGAAAGAGGGAGAAACAATTGGGTACTGTGAAGATCAATCCACGCGATGTTGAGATAATTGCCATCAATATGTTGCTGGGTTTGAATTGGAACAGTGAGGCAAGAAGTGAGTTTTTAAAGAAATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

13.24

Weight (kDa)

9.0

Isoelectric Point (pI)

53.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 135, 267
AciI CCGC 1 cut(s) 133
AclWI GGATC 1 cut(s) 82
AfaI GTAC 1 cut(s) 247
AfiI CCNNNNNNNGG 1 cut(s) 61
AgsI TTSAA 1 cut(s) 307
AluBI AGCT 3 cut(s) 124, 151, 218
AluI AGCT 3 cut(s) 124, 151, 218
Alw26I GTCTC 1 cut(s) 30
AlwI GGATC 1 cut(s) 82
AoxI GGCC 1 cut(s) 174
ApeKI GCWGC 2 cut(s) 97, 191
AspS9I GGNCC 1 cut(s) 37
AvaII GGWCC 1 cut(s) 37
BbvI GCAGC 2 cut(s) 109, 178
BccI CCATC 1 cut(s) 293
BcgI CGANNNNNNTGC 2 cut(s) 97, 131
BcoDI GTCTC 1 cut(s) 30
BfmI CTRYAG 1 cut(s) 20
BisI GCNGC 2 cut(s) 98, 192
BlsI GCNGC 2 cut(s) 99, 193
Bme18I GGWCC 1 cut(s) 37
BmgT120I GGNCC 1 cut(s) 37
BmiI GGNNCC 2 cut(s) 6, 39
BsaJI CCNNGG 2 cut(s) 87, 177
Bsc4I CCNNNNNNNGG 1 cut(s) 61
Bse3DI GCAATG 1 cut(s) 186
BseDI CCNNGG 2 cut(s) 87, 177
BseLI CCNNNNNNNGG 1 cut(s) 61
BseMI GCAATG 1 cut(s) 186
BseMII CTCAG 2 cut(s) 43, 213
BseXI GCAGC 2 cut(s) 109, 178
BseYI CCCAGC 1 cut(s) 298
Bsh1236I CGCG 2 cut(s) 135, 267
BshFI GGCC 1 cut(s) 176
BslI CCNNNNNNNGG 1 cut(s) 61
BsmAI GTCTC 1 cut(s) 30
BsnI GGCC 1 cut(s) 176
Bsp143I GATC 4 cut(s) 32, 74, 142, 255
Bsp19I CCATGG 1 cut(s) 177
BspACI CCGC 1 cut(s) 133
BspANI GGCC 1 cut(s) 176
BspCNI CTCAG 2 cut(s) 42, 212
BspFNI CGCG 2 cut(s) 135, 267
BspLI GGNNCC 2 cut(s) 6, 39
BspPI GGATC 1 cut(s) 82
BsrDI GCAATG 1 cut(s) 186
BssECI CCNNGG 2 cut(s) 87, 177
BssMI GATC 4 cut(s) 32, 74, 142, 255
BssT1I CCWWGG 2 cut(s) 87, 177
Bst4CI ACNGT 3 cut(s) 24, 250, 317
BstC8I GCNNGC 1 cut(s) 149
BstDEI CTNAG 2 cut(s) 29, 199
BstDSI CCRYGG 1 cut(s) 177
BstFNI CGCG 2 cut(s) 135, 267
BstKTI GATC 4 cut(s) 35, 77, 145, 258
BstMAI GTCTC 1 cut(s) 30
BstMBI GATC 4 cut(s) 32, 74, 142, 255
BstMWI GCNNNNNNNGC 1 cut(s) 188
BstSFI CTRYAG 1 cut(s) 20
BstUI CGCG 2 cut(s) 135, 267
BstV1I GCAGC 2 cut(s) 109, 178
BsuRI GGCC 1 cut(s) 176
BtgI CCRYGG 1 cut(s) 177
BtgZI GCGATG 1 cut(s) 282
BtsIMutI CAGTG 3 cut(s) 48, 126, 322
Cac8I GCNNGC 1 cut(s) 149
Cfr13I GGNCC 1 cut(s) 37
CseI GACGC 1 cut(s) 124
Csp6I GTAC 1 cut(s) 246
CviAII CATG 1 cut(s) 178
CviJI RGCY 7 cut(s) 7, 113, 124, 151, 176, 182, 218
CviKI_1 RGCY 7 cut(s) 7, 113, 124, 151, 176, 182, 218
CviQI GTAC 1 cut(s) 246
DdeI CTNAG 2 cut(s) 29, 199
DpnI GATC 4 cut(s) 34, 76, 144, 257
DpnII GATC 4 cut(s) 32, 74, 142, 255
DraI TTTAAA 1 cut(s) 339
Eco130I CCWWGG 2 cut(s) 87, 177
Eco47I GGWCC 1 cut(s) 37
EcoT14I CCWWGG 2 cut(s) 87, 177
ErhI CCWWGG 2 cut(s) 87, 177
FaeI CATG 1 cut(s) 181
FaiI YATR 3 cut(s) 179, 221, 293
FatI CATG 1 cut(s) 177
Fnu4HI GCNGC 2 cut(s) 98, 192
Fsp4HI GCNGC 2 cut(s) 98, 192
GluI GCNGC 2 cut(s) 98, 192
GsaI CCCAGC 1 cut(s) 302
HaeIII GGCC 1 cut(s) 176
HgaI GACGC 1 cut(s) 124
Hin1II CATG 1 cut(s) 181
HinfI GANTC 3 cut(s) 82, 155, 165
Hpy188I TCNGA 3 cut(s) 32, 37, 202
Hpy188III TCNNGA 1 cut(s) 169
Hpy99I CGWCG 1 cut(s) 140
HpyAV CCTTC 4 cut(s) 55, 55, 124, 166
HpyCH4III ACNGT 3 cut(s) 24, 250, 317
HpyCH4V TGCA 1 cut(s) 97
HpyF10VI GCNNNNNNNGC 1 cut(s) 188
HpyF3I CTNAG 2 cut(s) 29, 199
Hsp92II CATG 1 cut(s) 181
Kzo9I GATC 4 cut(s) 32, 74, 142, 255
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 3 cut(s) 161, 182, 284
Lsp1109I GCAGC 2 cut(s) 109, 178
MalI GATC 4 cut(s) 34, 76, 144, 257
MboI GATC 4 cut(s) 32, 74, 142, 255
MboII GAAGA 2 cut(s) 152, 265
MfeI CAATTG 1 cut(s) 239
MluCI AATT 5 cut(s) 65, 239, 279, 307, 344
MlyI GAGTC 1 cut(s) 76
MnlI CCTC 4 cut(s) 72, 208, 222, 313
MseI TTAA 1 cut(s) 338
MslI CAYNNNNRTG 1 cut(s) 290
MunI CAATTG 1 cut(s) 239
MvnI CGCG 2 cut(s) 135, 267
MwoI GCNNNNNNNGC 1 cut(s) 188
NcoI CCATGG 1 cut(s) 177
NdeII GATC 4 cut(s) 32, 74, 142, 255
NlaIII CATG 1 cut(s) 181
NlaIV GGNNCC 2 cut(s) 6, 39
PfeI GAWTC 2 cut(s) 155, 165
PflFI GACNNNGTC 1 cut(s) 134
PkrI GCNGC 2 cut(s) 99, 193
PleI GAGTC 1 cut(s) 76
PpsI GAGTC 1 cut(s) 76
PspFI CCCAGC 1 cut(s) 298
PspN4I GGNNCC 2 cut(s) 6, 39
PspPI GGNCC 1 cut(s) 37
PsyI GACNNNGTC 1 cut(s) 134
RsaI GTAC 1 cut(s) 247
RsaNI GTAC 1 cut(s) 246
RseI CAYNNNNRTG 1 cut(s) 290
SaqAI TTAA 1 cut(s) 338
SatI GCNGC 2 cut(s) 98, 192
Sau3AI GATC 4 cut(s) 32, 74, 142, 255
Sau96I GGNCC 1 cut(s) 37
SchI GAGTC 1 cut(s) 76
SetI ASST 4 cut(s) 126, 153, 200, 220
SfcI CTRYAG 1 cut(s) 20
SinI GGWCC 1 cut(s) 37
SmiMI CAYNNNNRTG 1 cut(s) 290
Sse9I AATT 5 cut(s) 65, 239, 279, 307, 344
SsiI CCGC 1 cut(s) 133
StyI CCWWGG 2 cut(s) 87, 177
TaaI ACNGT 3 cut(s) 24, 250, 317
TaqI TCGA 6 cut(s) 77, 117, 138, 153, 158, 207
TasI AATT 5 cut(s) 65, 239, 279, 307, 344
TfiI GAWTC 2 cut(s) 155, 165
Tru1I TTAA 1 cut(s) 338
Tru9I TTAA 1 cut(s) 338
TscAI CASTG 3 cut(s) 55, 133, 322
TseI GCWGC 2 cut(s) 97, 191
TspRI CASTG 3 cut(s) 55, 133, 322
Tth111I GACNNNGTC 1 cut(s) 134
VpaK11BI GGWCC 1 cut(s) 37
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.