Rmu_sc0002079.1_g000029

Huntingtin-interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002079.1
OG0014843
Physical Location & Seq
Reverse (-)
132077 .. 134551
2475 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002079.1_g000029.1.cds

Sequence Viewer

Length: 669 bp
atggtacttctgttcatgaagatccttgtgagatttactcacctcgaaactcctgctgagtcttcaatgcagaataagtttcacgtgaatcgatccaaacaaccaccaaggatcgatcggcgaggctactctgagctcaaccaagaagactcgaagccttgccgatgtcggaataaggatttccggtcgggtccgatttcctccacctgtgccgccttgcagcgccgccatgaaggagaatcaccgatagagaccaccacagagacgaccggagcaaggaggcgaacctgtctggaaagtttcgtcgccggagacagtcgcagtccgcaggaaaagtcgggtcgggtcgaccggtttcggatctggtcagacggaaatcttcgataccgaaggaacgaggactccaaggacttgcagcaacagagcaaagccttcgataagctcattgaccacgtcgaagatcgccagttcgattcaacacgattccagaaggcaatggcttccattgctgccacctcagaagcctatttggaagctatgagaaagagggagaaagaattgggtactgtgaagatcaatccacgcgatgttgagataattgccatcaatatgttgttgggtttgaattgcaacagtgaggcaggaagtgagtttctaaggaaattgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

222

Amino Acids

25.59

Weight (kDa)

9.39

Isoelectric Point (pI)

64.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 348
AccII CGCG 1 cut(s) 585
AciI CCGC 3 cut(s) 213, 226, 326
AclWI GGATC 4 cut(s) 16, 87, 119, 368
AcvI CACGTG 1 cut(s) 85
AfaI GTAC 2 cut(s) 6, 565
AfiI CCNNNNNNNGG 1 cut(s) 276
AgeI ACCGGT 1 cut(s) 351
AgsI TTSAA 3 cut(s) 66, 477, 625
AjiI CACGTC 1 cut(s) 454
AloI GAACNNNNNNTCC 2 cut(s) 386, 418
AluBI AGCT 3 cut(s) 136, 442, 536
AluI AGCT 3 cut(s) 136, 442, 536
Alw21I GWGCWC 1 cut(s) 138
Alw26I GTCTC 3 cut(s) 245, 257, 306
AlwI GGATC 4 cut(s) 16, 87, 119, 368
ApeKI GCWGC 3 cut(s) 220, 415, 509
AsiGI ACCGGT 1 cut(s) 351
AspLEI GCGC 1 cut(s) 225
AspS9I GGNCC 1 cut(s) 191
AsuHPI GGTGA 2 cut(s) 32, 234
AvaII GGWCC 1 cut(s) 191
BaeI ACNNNNGTAYC 1 cut(s) 29
BanII GRGCYC 1 cut(s) 138
BbrPI CACGTG 1 cut(s) 85
BbsI GAAGAC 2 cut(s) 54, 153
Bbv12I GWGCWC 1 cut(s) 138
BbvI GCAGC 3 cut(s) 232, 427, 496
BccI CCATC 1 cut(s) 611
BcgI CGANNNNNNTGC 4 cut(s) 35, 69, 415, 449
BcoDI GTCTC 3 cut(s) 245, 257, 306
BfoI RGCGCY 1 cut(s) 226
BisI GCNGC 5 cut(s) 213, 221, 226, 416, 510
BlsI GCNGC 5 cut(s) 214, 222, 227, 417, 511
Bme18I GGWCC 1 cut(s) 191
BmgBI CACGTC 1 cut(s) 454
BmgT120I GGNCC 1 cut(s) 191
BmiI GGNNCC 1 cut(s) 192
BpiI GAAGAC 2 cut(s) 54, 153
BplI GAGNNNNNCTC 2 cut(s) 22, 54
Bsa29I ATCGAT 2 cut(s) 91, 114
BsaAI YACGTR 1 cut(s) 85
BsaI GGTCTC 1 cut(s) 245
BsaJI CCNNGG 2 cut(s) 107, 405
BsaWI WCCGGW 3 cut(s) 183, 269, 351
BsaXI ACNNNNNCTCC 2 cut(s) 386, 416
Bsc4I CCNNNNNNNGG 1 cut(s) 276
Bse118I RCCGGY 1 cut(s) 351
Bse1I ACTGG 1 cut(s) 466
Bse3DI GCAATG 2 cut(s) 501, 504
BseCI ATCGAT 2 cut(s) 91, 114
BseDI CCNNGG 2 cut(s) 107, 405
BseLI CCNNNNNNNGG 1 cut(s) 276
BseMI GCAATG 2 cut(s) 501, 504
BseMII CTCAG 3 cut(s) 48, 123, 531
BseNI ACTGG 1 cut(s) 466
BseXI GCAGC 3 cut(s) 232, 427, 496
Bsh1236I CGCG 1 cut(s) 585
Bsh1285I CGRYCG 4 cut(s) 118, 188, 270, 352
BshTI ACCGGT 1 cut(s) 351
BshVI ATCGAT 2 cut(s) 91, 114
BsiEI CGRYCG 4 cut(s) 118, 188, 270, 352
BsiHKAI GWGCWC 1 cut(s) 138
BsiSI CCGG 4 cut(s) 184, 270, 309, 352
BslI CCNNNNNNNGG 1 cut(s) 276
BsmAI GTCTC 3 cut(s) 245, 257, 306
BsmBI CGTCTC 1 cut(s) 257
Bso31I GGTCTC 1 cut(s) 245
Bsp1286I GDGCHC 1 cut(s) 138
Bsp143I GATC 7 cut(s) 21, 92, 111, 115, 360, 460, 573
BspACI CCGC 3 cut(s) 213, 226, 326
BspCNI CTCAG 3 cut(s) 49, 124, 530
BspDI ATCGAT 2 cut(s) 91, 114
BspFNI CGCG 1 cut(s) 585
BspHI TCATGA 1 cut(s) 15
BspLI GGNNCC 1 cut(s) 192
BspPI GGATC 4 cut(s) 16, 87, 119, 368
BspTNI GGTCTC 1 cut(s) 245
BsrDI GCAATG 2 cut(s) 501, 504
BsrFI RCCGGY 1 cut(s) 351
BsrI ACTGG 1 cut(s) 466
BssAI RCCGGY 1 cut(s) 351
BssECI CCNNGG 2 cut(s) 107, 405
BssMI GATC 7 cut(s) 21, 92, 111, 115, 360, 460, 573
BssT1I CCWWGG 2 cut(s) 107, 405
Bst4CI ACNGT 3 cut(s) 317, 568, 635
BstBAI YACGTR 1 cut(s) 85
BstDEI CTNAG 4 cut(s) 57, 132, 517, 656
BstFNI CGCG 1 cut(s) 585
BstH2I RGCGCY 1 cut(s) 226
BstHHI GCGC 1 cut(s) 225
BstKTI GATC 7 cut(s) 24, 95, 114, 118, 363, 463, 576
BstMAI GTCTC 3 cut(s) 245, 257, 306
BstMBI GATC 7 cut(s) 21, 92, 111, 115, 360, 460, 573
BstMCI CGRYCG 4 cut(s) 118, 188, 270, 352
BstMWI GCNNNNNNNGC 1 cut(s) 506
BstUI CGCG 1 cut(s) 585
BstV1I GCAGC 3 cut(s) 232, 427, 496
BstV2I GAAGAC 2 cut(s) 54, 153
BstX2I RGATCY 2 cut(s) 21, 360
BstYI RGATCY 2 cut(s) 21, 360
Bsu15I ATCGAT 2 cut(s) 91, 114
BsuTUI ATCGAT 2 cut(s) 91, 114
BtgZI GCGATG 1 cut(s) 600
BtrI CACGTC 1 cut(s) 454
BtsIMutI CAGTG 1 cut(s) 640
CciI TCATGA 1 cut(s) 15
CfoI GCGC 1 cut(s) 225
Cfr10I RCCGGY 1 cut(s) 351
Cfr13I GGNCC 1 cut(s) 191
ClaI ATCGAT 2 cut(s) 91, 114
Csp6I GTAC 2 cut(s) 5, 564
CspAI ACCGGT 1 cut(s) 351
CviAII CATG 2 cut(s) 16, 230
CviJI RGCY 8 cut(s) 126, 136, 157, 431, 442, 500, 524, 536
CviKI_1 RGCY 8 cut(s) 126, 136, 157, 431, 442, 500, 524, 536
CviQI GTAC 2 cut(s) 5, 564
DdeI CTNAG 4 cut(s) 57, 132, 517, 656
DpnI GATC 7 cut(s) 23, 94, 113, 117, 362, 462, 575
DpnII GATC 7 cut(s) 21, 92, 111, 115, 360, 460, 573
Ecl136II GAGCTC 1 cut(s) 136
Eco130I CCWWGG 2 cut(s) 107, 405
Eco24I GRGCYC 1 cut(s) 138
Eco31I GGTCTC 1 cut(s) 245
Eco47I GGWCC 1 cut(s) 191
Eco53kI GAGCTC 1 cut(s) 136
Eco72I CACGTG 1 cut(s) 85
EcoICRI GAGCTC 1 cut(s) 136
EcoT14I CCWWGG 2 cut(s) 107, 405
EcoT38I GRGCYC 1 cut(s) 138
ErhI CCWWGG 2 cut(s) 107, 405
Esp3I CGTCTC 1 cut(s) 257
FaeI CATG 2 cut(s) 19, 233
FaiI YATR 4 cut(s) 17, 231, 539, 611
FatI CATG 2 cut(s) 15, 229
FblI GTMKAC 1 cut(s) 348
Fnu4HI GCNGC 5 cut(s) 213, 221, 226, 416, 510
FriOI GRGCYC 1 cut(s) 138
Fsp4HI GCNGC 5 cut(s) 213, 221, 226, 416, 510
GlaI GCGC 1 cut(s) 224
GluI GCNGC 5 cut(s) 213, 221, 226, 416, 510
HaeII RGCGCY 1 cut(s) 226
HapII CCGG 4 cut(s) 184, 270, 309, 352
HhaI GCGC 1 cut(s) 225
Hin1II CATG 2 cut(s) 19, 233
Hin6I GCGC 1 cut(s) 223
HinP1I GCGC 1 cut(s) 223
HincII GTYRAC 1 cut(s) 349
HindII GTYRAC 1 cut(s) 349
HinfI GANTC 7 cut(s) 59, 88, 149, 239, 401, 473, 483
HpaII CCGG 4 cut(s) 184, 270, 309, 352
HphI GGTGA 2 cut(s) 32, 234
Hpy166II GTNNAC 1 cut(s) 349
Hpy188I TCNGA 6 cut(s) 133, 171, 195, 360, 370, 520
Hpy188III TCNNGA 3 cut(s) 16, 293, 487
Hpy8I GTNNAC 1 cut(s) 349
Hpy99I CGWCG 2 cut(s) 308, 458
HpyAV CCTTC 4 cut(s) 227, 384, 442, 484
HpyCH4III ACNGT 3 cut(s) 317, 568, 635
HpyCH4IV ACGT 2 cut(s) 84, 453
HpyCH4V TGCA 4 cut(s) 70, 220, 415, 630
HpyF10VI GCNNNNNNNGC 1 cut(s) 506
HpyF3I CTNAG 4 cut(s) 57, 132, 517, 656
HpySE526I ACGT 2 cut(s) 84, 453
Hsp92II CATG 2 cut(s) 19, 233
HspAI GCGC 1 cut(s) 223
Kzo9I GATC 7 cut(s) 21, 92, 111, 115, 360, 460, 573
LmnI GCTCC 1 cut(s) 272
Lsp1109I GCAGC 3 cut(s) 232, 427, 496
MaeII ACGT 2 cut(s) 84, 453
MalI GATC 7 cut(s) 23, 94, 113, 117, 362, 462, 575
MboI GATC 7 cut(s) 21, 92, 111, 115, 360, 460, 573
MboII GAAGA 6 cut(s) 31, 54, 158, 371, 470, 583
MflI RGATCY 2 cut(s) 21, 360
MhlI GDGCHC 1 cut(s) 138
MluCI AATT 4 cut(s) 557, 597, 625, 662
MlyI GAGTC 3 cut(s) 68, 143, 395
MmeI TCCRAC 1 cut(s) 149
MnlI CCTC 8 cut(s) 53, 116, 211, 273, 391, 526, 540, 631
MslI CAYNNNNRTG 1 cut(s) 608
MspI CCGG 4 cut(s) 184, 270, 309, 352
MvnI CGCG 1 cut(s) 585
MwoI GCNNNNNNNGC 1 cut(s) 506
NdeII GATC 7 cut(s) 21, 92, 111, 115, 360, 460, 573
NlaIII CATG 2 cut(s) 19, 233
NlaIV GGNNCC 1 cut(s) 192
PagI TCATGA 1 cut(s) 15
PfeI GAWTC 4 cut(s) 88, 239, 473, 483
PflFI GACNNNGTC 1 cut(s) 452
PinAI ACCGGT 1 cut(s) 351
PkrI GCNGC 5 cut(s) 214, 222, 227, 417, 511
Ple19I CGATCG 1 cut(s) 118
PleI GAGTC 3 cut(s) 67, 143, 395
PmaCI CACGTG 1 cut(s) 85
PmlI CACGTG 1 cut(s) 85
PpsI GAGTC 3 cut(s) 67, 143, 395
Ppu21I YACGTR 1 cut(s) 85
Psp124BI GAGCTC 1 cut(s) 138
PspCI CACGTG 1 cut(s) 85
PspN4I GGNNCC 1 cut(s) 192
PspPI GGNCC 1 cut(s) 191
PsuI RGATCY 2 cut(s) 21, 360
PsyI GACNNNGTC 1 cut(s) 452
PvuI CGATCG 1 cut(s) 118
RsaI GTAC 2 cut(s) 6, 565
RsaNI GTAC 2 cut(s) 5, 564
RseI CAYNNNNRTG 1 cut(s) 608
SacI GAGCTC 1 cut(s) 138
SalI GTCGAC 1 cut(s) 347
SatI GCNGC 5 cut(s) 213, 221, 226, 416, 510
Sau3AI GATC 7 cut(s) 21, 92, 111, 115, 360, 460, 573
Sau96I GGNCC 1 cut(s) 191
SchI GAGTC 3 cut(s) 68, 143, 395
SduI GDGCHC 1 cut(s) 138
SetI ASST 9 cut(s) 45, 87, 138, 209, 290, 444, 456, 518, 538
SinI GGWCC 1 cut(s) 191
SmiMI CAYNNNNRTG 1 cut(s) 608
Sse9I AATT 4 cut(s) 557, 597, 625, 662
SsiI CCGC 3 cut(s) 213, 226, 326
SstI GAGCTC 1 cut(s) 138
StyI CCWWGG 2 cut(s) 107, 405
TaaI ACNGT 3 cut(s) 317, 568, 635
TaiI ACGT 2 cut(s) 87, 456
TaqI TCGA 9 cut(s) 45, 91, 114, 152, 348, 382, 435, 456, 471
TasI AATT 4 cut(s) 557, 597, 625, 662
TauI GCSGC 2 cut(s) 215, 228
TfiI GAWTC 4 cut(s) 88, 239, 473, 483
TscAI CASTG 1 cut(s) 640
TseI GCWGC 3 cut(s) 220, 415, 509
TspDTI ATGAA 3 cut(s) 4, 32, 246
TspGWI ACGGA 1 cut(s) 387
TspRI CASTG 1 cut(s) 640
Tth111I GACNNNGTC 1 cut(s) 452
VpaK11BI GGWCC 1 cut(s) 191
XmiI GTMKAC 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.