RLG00000003196

Huntingtin-interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0014843
Physical Location & Seq
Reverse (-)
45508636 .. 45509066
431 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003196

Sequence Viewer

Length: 321 bp
ATGAAGCCACCGGCTTCGCCGCAGTCTCTCATATCGGACTCAGCTTTCACAGACCCTAGCTCCGACGAAGACTTCGATCTGTCTCTCAAATTCAAATCTCAATTCAGTCTCAAGGGAGCTACTGATCACAAGCTCGATTCGACCCAATTCCAGGAGGCTGTGGCTTCCATCGCTGCCACCTCAGAAGCCAATTTGAAAACTATGAGAAAGAGGGAGAAAGAATTGGCTACTCTGAAGATCAATCCATGCGATGTTGAGATAATAGTCATCAACATGTGTCTGGGTTTGAATTGGAACAGTGAGGCAGGAAGTGAGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

11.63

Weight (kDa)

4.75

Isoelectric Point (pI)

40.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 20
AcsI RAATTY 1 cut(s) 89
AcuI CTGAAG 1 cut(s) 254
AfiI CCNNNNNNNGG 1 cut(s) 151
AflIII ACRYGT 1 cut(s) 273
AgsI TTSAA 3 cut(s) 94, 196, 289
AjnI CCWGG 1 cut(s) 150
AluBI AGCT 4 cut(s) 44, 60, 119, 133
AluI AGCT 4 cut(s) 44, 60, 119, 133
Alw26I GTCTC 3 cut(s) 30, 87, 113
ApeKI GCWGC 1 cut(s) 173
ApoI RAATTY 1 cut(s) 89
ArsI GACNNNNNNTTYG 2 cut(s) 56, 88
BbsI GAAGAC 1 cut(s) 75
BbvI GCAGC 1 cut(s) 160
BccI CCATC 1 cut(s) 176
BciT130I CCWGG 1 cut(s) 152
BclI TGATCA 1 cut(s) 124
BcoDI GTCTC 3 cut(s) 30, 87, 113
BfaI CTAG 1 cut(s) 57
BisI GCNGC 2 cut(s) 20, 174
BlsI GCNGC 2 cut(s) 21, 175
Bme1390I CCNGG 1 cut(s) 152
BmrFI CCNGG 1 cut(s) 152
BpiI GAAGAC 1 cut(s) 75
BpuEI CTTGAG 1 cut(s) 95
BsaXI ACNNNNNCTCC 2 cut(s) 44, 74
Bsc4I CCNNNNNNNGG 1 cut(s) 151
Bse118I RCCGGY 1 cut(s) 10
BseBI CCWGG 1 cut(s) 152
BseLI CCNNNNNNNGG 1 cut(s) 151
BseMII CTCAG 2 cut(s) 54, 195
BseXI GCAGC 1 cut(s) 160
BsiSI CCGG 1 cut(s) 11
BslI CCNNNNNNNGG 1 cut(s) 151
BsmAI GTCTC 3 cut(s) 30, 87, 113
Bsp143I GATC 3 cut(s) 76, 124, 237
BspACI CCGC 1 cut(s) 20
BspCNI CTCAG 2 cut(s) 53, 194
BsrFI RCCGGY 1 cut(s) 10
BssAI RCCGGY 1 cut(s) 10
BssMI GATC 3 cut(s) 76, 124, 237
Bst2UI CCWGG 1 cut(s) 152
Bst4CI ACNGT 1 cut(s) 299
BstDEI CTNAG 2 cut(s) 40, 181
BstKTI GATC 3 cut(s) 79, 127, 240
BstMAI GTCTC 3 cut(s) 30, 87, 113
BstMBI GATC 3 cut(s) 76, 124, 237
BstMWI GCNNNNNNNGC 1 cut(s) 170
BstNI CCWGG 1 cut(s) 152
BstNSI RCATGY 1 cut(s) 277
BstSCI CCNGG 1 cut(s) 150
BstV1I GCAGC 1 cut(s) 160
BstV2I GAAGAC 1 cut(s) 75
BtgZI GCGATG 2 cut(s) 154, 264
BtsIMutI CAGTG 1 cut(s) 304
Cfr10I RCCGGY 1 cut(s) 10
CviAII CATG 2 cut(s) 246, 274
DdeI CTNAG 2 cut(s) 40, 181
DpnI GATC 3 cut(s) 78, 126, 239
DpnII GATC 3 cut(s) 76, 124, 237
Eco57I CTGAAG 1 cut(s) 254
EcoRII CCWGG 1 cut(s) 150
FaeI CATG 2 cut(s) 249, 277
FaiI YATR 4 cut(s) 32, 203, 247, 275
FatI CATG 2 cut(s) 245, 273
FbaI TGATCA 1 cut(s) 124
Fnu4HI GCNGC 2 cut(s) 20, 174
Fsp4HI GCNGC 2 cut(s) 20, 174
FspBI CTAG 1 cut(s) 57
GluI GCNGC 2 cut(s) 20, 174
HapII CCGG 1 cut(s) 11
Hin1II CATG 2 cut(s) 249, 277
HinfI GANTC 2 cut(s) 38, 137
HpaII CCGG 1 cut(s) 11
Hpy188I TCNGA 4 cut(s) 37, 64, 184, 234
Hpy99I CGWCG 1 cut(s) 68
HpyCH4III ACNGT 1 cut(s) 299
HpyF10VI GCNNNNNNNGC 1 cut(s) 170
HpyF3I CTNAG 2 cut(s) 40, 181
Hsp92II CATG 2 cut(s) 249, 277
Ksp22I TGATCA 1 cut(s) 124
Kzo9I GATC 3 cut(s) 76, 124, 237
LmnI GCTCC 2 cut(s) 65, 116
LpnPI CCDG 5 cut(s) 24, 137, 164, 266, 291
Lsp1109I GCAGC 1 cut(s) 160
MaeI CTAG 1 cut(s) 57
MalI GATC 3 cut(s) 78, 126, 239
MboI GATC 3 cut(s) 76, 124, 237
MboII GAAGA 2 cut(s) 80, 247
MluCI AATT 6 cut(s) 89, 101, 146, 190, 221, 289
MlyI GAGTC 1 cut(s) 32
MmeI TCCRAC 1 cut(s) 87
MnlI CCTC 4 cut(s) 148, 190, 204, 295
MseI TTAA 1 cut(s) 319
MslI CAYNNNNRTG 1 cut(s) 272
MspI CCGG 1 cut(s) 11
MspR9I CCNGG 1 cut(s) 152
MvaI CCWGG 1 cut(s) 152
MwoI GCNNNNNNNGC 1 cut(s) 170
NdeII GATC 3 cut(s) 76, 124, 237
NlaIII CATG 2 cut(s) 249, 277
NspI RCATGY 1 cut(s) 277
PciI ACATGT 1 cut(s) 273
PcsI WCGNNNNNNNCGW 1 cut(s) 72
PfeI GAWTC 1 cut(s) 137
PfoI TCCNGGA 1 cut(s) 150
PkrI GCNGC 2 cut(s) 21, 175
PleI GAGTC 1 cut(s) 32
PpsI GAGTC 1 cut(s) 32
PscI ACATGT 1 cut(s) 273
Psp6I CCWGG 1 cut(s) 150
PspGI CCWGG 1 cut(s) 150
RseI CAYNNNNRTG 1 cut(s) 272
SaqAI TTAA 1 cut(s) 319
SatI GCNGC 2 cut(s) 20, 174
Sau3AI GATC 3 cut(s) 76, 124, 237
SchI GAGTC 1 cut(s) 32
ScrFI CCNGG 1 cut(s) 152
SetI ASST 5 cut(s) 46, 62, 121, 135, 182
SmiMI CAYNNNNRTG 1 cut(s) 272
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
Sse9I AATT 6 cut(s) 89, 101, 146, 190, 221, 289
SsiI CCGC 1 cut(s) 20
SspMI CTAG 1 cut(s) 57
StyD4I CCNGG 1 cut(s) 150
TaaI ACNGT 1 cut(s) 299
TaqI TCGA 3 cut(s) 75, 135, 140
TasI AATT 6 cut(s) 89, 101, 146, 190, 221, 289
TauI GCSGC 1 cut(s) 22
TfiI GAWTC 1 cut(s) 137
Tru1I TTAA 1 cut(s) 319
Tru9I TTAA 1 cut(s) 319
TscAI CASTG 1 cut(s) 304
TseI GCWGC 1 cut(s) 173
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 304
XapI RAATTY 1 cut(s) 89
XceI RCATGY 1 cut(s) 277
XspI CTAG 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.