Rmu_sc0024464.1_g000005

Huntingtin-interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0024464.1
OG0014843
Physical Location & Seq
Forward (+)
13372 .. 14063
692 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0024464.1_g000005.1.cds

Sequence Viewer

Length: 312 bp
atggtacctgaggttctgaccccgaccgaagaatggatcgaggactccaaggacttgcagcaacagagcaaaacctttgataagctcactgactgcgtcgaagatcgccagctcgattcgacacgatttcagaaggccatggcttccattgctgccaccttagaagtcgatttggaagctatgagaaagagggagaaagaattgggtactgtgaagatcaatccatacgatgttgagataattgccatcaatatgttgctgggttttaattggaacagtgaggcaggaagtgagttttttaggaaattgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.89

Weight (kDa)

4.58

Isoelectric Point (pI)

48.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 4
AccB1I GGYRCC 1 cut(s) 4
AclWI GGATC 1 cut(s) 44
AfaI GTAC 2 cut(s) 6, 208
AfiI CCNNNNNNNGG 1 cut(s) 33
AluBI AGCT 3 cut(s) 85, 112, 179
AluI AGCT 3 cut(s) 85, 112, 179
AlwI GGATC 1 cut(s) 44
AoxI GGCC 1 cut(s) 135
ApeKI GCWGC 2 cut(s) 58, 152
Asp718I GGTACC 1 cut(s) 4
AxyI CCTNAGG 1 cut(s) 9
BanI GGYRCC 1 cut(s) 4
BbvI GCAGC 2 cut(s) 70, 139
BccI CCATC 1 cut(s) 254
BisI GCNGC 2 cut(s) 59, 153
BlsI GCNGC 2 cut(s) 60, 154
BmiI GGNNCC 1 cut(s) 6
BsaJI CCNNGG 2 cut(s) 48, 138
Bsc4I CCNNNNNNNGG 1 cut(s) 33
Bse21I CCTNAGG 1 cut(s) 9
Bse3DI GCAATG 1 cut(s) 147
BseDI CCNNGG 2 cut(s) 48, 138
BseLI CCNNNNNNNGG 1 cut(s) 33
BseMI GCAATG 1 cut(s) 147
BseXI GCAGC 2 cut(s) 70, 139
BseYI CCCAGC 1 cut(s) 259
Bsh1285I CGRYCG 1 cut(s) 27
BshFI GGCC 1 cut(s) 137
BshNI GGYRCC 1 cut(s) 4
BsiEI CGRYCG 1 cut(s) 27
BslI CCNNNNNNNGG 1 cut(s) 33
BsnI GGCC 1 cut(s) 137
Bsp143I GATC 3 cut(s) 36, 103, 216
Bsp19I CCATGG 1 cut(s) 138
BspANI GGCC 1 cut(s) 137
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 44
BspT107I GGYRCC 1 cut(s) 4
BsrDI GCAATG 1 cut(s) 147
BssECI CCNNGG 2 cut(s) 48, 138
BssMI GATC 3 cut(s) 36, 103, 216
BssT1I CCWWGG 2 cut(s) 48, 138
Bst4CI ACNGT 2 cut(s) 211, 278
BstC8I GCNNGC 1 cut(s) 110
BstDEI CTNAG 2 cut(s) 9, 160
BstDSI CCRYGG 1 cut(s) 138
BstKTI GATC 3 cut(s) 39, 106, 219
BstMBI GATC 3 cut(s) 36, 103, 216
BstMCI CGRYCG 1 cut(s) 27
BstMWI GCNNNNNNNGC 1 cut(s) 149
BstV1I GCAGC 2 cut(s) 70, 139
Bsu36I CCTNAGG 1 cut(s) 9
BsuRI GGCC 1 cut(s) 137
BtgI CCRYGG 1 cut(s) 138
BtsIMutI CAGTG 2 cut(s) 87, 283
Cac8I GCNNGC 1 cut(s) 110
CseI GACGC 1 cut(s) 85
Csp6I GTAC 2 cut(s) 5, 207
CviAII CATG 1 cut(s) 139
CviJI RGCY 5 cut(s) 85, 112, 137, 143, 179
CviKI_1 RGCY 5 cut(s) 85, 112, 137, 143, 179
CviQI GTAC 2 cut(s) 5, 207
DdeI CTNAG 2 cut(s) 9, 160
DpnI GATC 3 cut(s) 38, 105, 218
DpnII GATC 3 cut(s) 36, 103, 216
Eco130I CCWWGG 2 cut(s) 48, 138
Eco81I CCTNAGG 1 cut(s) 9
EcoT14I CCWWGG 2 cut(s) 48, 138
ErhI CCWWGG 2 cut(s) 48, 138
FaeI CATG 1 cut(s) 142
FaiI YATR 4 cut(s) 140, 182, 226, 254
FatI CATG 1 cut(s) 138
Fnu4HI GCNGC 2 cut(s) 59, 153
Fsp4HI GCNGC 2 cut(s) 59, 153
GluI GCNGC 2 cut(s) 59, 153
GsaI CCCAGC 1 cut(s) 263
HaeIII GGCC 1 cut(s) 137
HgaI GACGC 1 cut(s) 85
Hin1II CATG 1 cut(s) 142
HinfI GANTC 2 cut(s) 44, 116
Hpy188I TCNGA 2 cut(s) 18, 132
Hpy99I CGWCG 1 cut(s) 101
HpyAV CCTTC 1 cut(s) 127
HpyCH4III ACNGT 2 cut(s) 211, 278
HpyCH4V TGCA 1 cut(s) 58
HpyF10VI GCNNNNNNNGC 1 cut(s) 149
HpyF3I CTNAG 2 cut(s) 9, 160
Hsp92II CATG 1 cut(s) 142
KpnI GGTACC 1 cut(s) 8
Kzo9I GATC 3 cut(s) 36, 103, 216
LpnPI CCDG 4 cut(s) 21, 122, 245, 270
Lsp1109I GCAGC 2 cut(s) 70, 139
MalI GATC 3 cut(s) 38, 105, 218
MboI GATC 3 cut(s) 36, 103, 216
MboII GAAGA 3 cut(s) 41, 113, 226
MluCI AATT 4 cut(s) 200, 240, 268, 305
MlyI GAGTC 1 cut(s) 38
MnlI CCTC 4 cut(s) 4, 34, 183, 274
MseI TTAA 1 cut(s) 267
MslI CAYNNNNRTG 1 cut(s) 251
MwoI GCNNNNNNNGC 1 cut(s) 149
NcoI CCATGG 1 cut(s) 138
NdeII GATC 3 cut(s) 36, 103, 216
NlaIII CATG 1 cut(s) 142
NlaIV GGNNCC 1 cut(s) 6
PfeI GAWTC 1 cut(s) 116
PflFI GACNNNGTC 1 cut(s) 95
PkrI GCNGC 2 cut(s) 60, 154
PleI GAGTC 1 cut(s) 38
PpsI GAGTC 1 cut(s) 38
PspFI CCCAGC 1 cut(s) 259
PspN4I GGNNCC 1 cut(s) 6
PsrI GAACNNNNNNTAC 1 cut(s) 29
PsyI GACNNNGTC 1 cut(s) 95
RsaI GTAC 2 cut(s) 6, 208
RsaNI GTAC 2 cut(s) 5, 207
RseI CAYNNNNRTG 1 cut(s) 251
SaqAI TTAA 1 cut(s) 267
SatI GCNGC 2 cut(s) 59, 153
Sau3AI GATC 3 cut(s) 36, 103, 216
SchI GAGTC 1 cut(s) 38
SetI ASST 7 cut(s) 10, 15, 77, 87, 114, 161, 181
SmiMI CAYNNNNRTG 1 cut(s) 251
Sse9I AATT 4 cut(s) 200, 240, 268, 305
StyI CCWWGG 2 cut(s) 48, 138
TaaI ACNGT 2 cut(s) 211, 278
TaqI TCGA 5 cut(s) 39, 99, 114, 119, 168
TaqII GACCGA 1 cut(s) 41
TasI AATT 4 cut(s) 200, 240, 268, 305
TfiI GAWTC 1 cut(s) 116
Tru1I TTAA 1 cut(s) 267
Tru9I TTAA 1 cut(s) 267
TscAI CASTG 2 cut(s) 94, 283
TseI GCWGC 2 cut(s) 58, 152
TspRI CASTG 2 cut(s) 94, 283
Tth111I GACNNNGTC 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.