Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000854.1

Orthogroup ID

OG0014843

Physical Location & Seq

Genomic Coordinates Reverse (-)

284355 .. 285817

Gene Structure 1463 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000854.1_g000060.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

atgcccatcgcggaaatccctcccggcacacagccatcattaacgtcatccatagctttcgcggctacatgcacacacaattgccaagactctctccttcctcctccagaaattggaaattggatcccaaatccaaacaacctttataggcttttagccatgctctacgtggtcagacttgacccccctgaatggatcgaggactccaaggacttgcagcaacagagcaaagccttcgataagctcactgaccgcgtcgaagatcaccaggttgatttgacacgattccagaaggccatggcttccattgctgccaccttagaagtcgatttggaagctatgataaagagggagaaagaattgggtactgtgaagatcaatccacgcgatgttgagataattgccatcaatatgttgctgggtttgaattggaacagtgaggcaggaagtgagttttttaggaaattgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

156

Amino Acids

17.57

Weight (kDa)

4.82

Isoelectric Point (pI)

42.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014843)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0101441 RchiOBHm_Chr5g0023271
rosa_laevigata	RLG00000003196
rosa_multiflora	Rmu_sc0000854.1_g000060 Rmu_sc0002079.1_g000029 Rmu_sc0002416.1_g000019 Rmu_sc0007310.1_g000004 Rmu_sc0011008.1_g000001 Rmu_sc0024464.1_g000005
rosa_roxburghii	Rroxscaffold_1G00035670
rosa_samantha	Rh1AG220800 Rh2CG152900 Rh3DG314600 Rh6AG050000 Rh6AG411400 Rh7AG053400 Rh7DG427000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	113
AccII	CGCG	4 cut(s)	11, 62, 255, 387
AciI	CCGC	3 cut(s)	11, 62, 253
AclWI	GGATC	3 cut(s)	118, 131, 203
AfaI	GTAC	1 cut(s)	367
AfiI	CCNNNNNNNGG	2 cut(s)	113, 192
AgsI	TTSAA	1 cut(s)	427
AjnI	CCWGG	1 cut(s)	267
AluBI	AGCT	3 cut(s)	56, 244, 338
AluI	AGCT	3 cut(s)	56, 244, 338
AlwI	GGATC	3 cut(s)	118, 131, 203
AoxI	GGCC	1 cut(s)	294
ApeKI	GCWGC	2 cut(s)	217, 311
AsuC2I	CCSGG	1 cut(s)	24
AsuHPI	GGTGA	1 cut(s)	257
BamHI	GGATCC	1 cut(s)	123
BbvI	GCAGC	2 cut(s)	229, 298
BccI	CCATC	3 cut(s)	14, 43, 413
BcgI	CGANNNNNNTGC	2 cut(s)	217, 251
BciT130I	CCWGG	1 cut(s)	269
BcnI	CCSGG	1 cut(s)	24
BisI	GCNGC	3 cut(s)	63, 218, 312
BlsI	GCNGC	3 cut(s)	64, 219, 313
Bme1390I	CCNGG	2 cut(s)	24, 269
BmiI	GGNNCC	1 cut(s)	125
BmrFI	CCNGG	2 cut(s)	24, 269
BpmI	CTGGAG	1 cut(s)	90
BpuMI	CCSGG	1 cut(s)	24
BsaAI	YACGTR	1 cut(s)	169
BsaJI	CCNNGG	2 cut(s)	207, 297
Bsc4I	CCNNNNNNNGG	2 cut(s)	113, 192
Bse3DI	GCAATG	1 cut(s)	306
BseBI	CCWGG	1 cut(s)	269
BseDI	CCNNGG	2 cut(s)	207, 297
BseGI	GGATG	1 cut(s)	47
BseLI	CCNNNNNNNGG	2 cut(s)	113, 192
BseMI	GCAATG	1 cut(s)	306
BseRI	GAGGAG	1 cut(s)	93
BseXI	GCAGC	2 cut(s)	229, 298
BseYI	CCCAGC	1 cut(s)	418
Bsh1236I	CGCG	4 cut(s)	11, 62, 255, 387
BshFI	GGCC	1 cut(s)	296
BsiSI	CCGG	1 cut(s)	24
BslI	CCNNNNNNNGG	2 cut(s)	113, 192
BsnI	GGCC	1 cut(s)	296
Bsp143I	GATC	4 cut(s)	123, 195, 262, 375
Bsp19I	CCATGG	1 cut(s)	297
BspACI	CCGC	3 cut(s)	11, 62, 253
BspANI	GGCC	1 cut(s)	296
BspFNI	CGCG	4 cut(s)	11, 62, 255, 387
BspLI	GGNNCC	1 cut(s)	125
BspPI	GGATC	3 cut(s)	118, 131, 203
BsrDI	GCAATG	1 cut(s)	306
BssECI	CCNNGG	2 cut(s)	207, 297
BssMI	GATC	4 cut(s)	123, 195, 262, 375
BssT1I	CCWWGG	2 cut(s)	207, 297
Bst2UI	CCWGG	1 cut(s)	269
Bst4CI	ACNGT	2 cut(s)	370, 437
BstBAI	YACGTR	1 cut(s)	169
BstDEI	CTNAG	1 cut(s)	319
BstDSI	CCRYGG	1 cut(s)	297
BstF5I	GGATG	1 cut(s)	47
BstFNI	CGCG	4 cut(s)	11, 62, 255, 387
BstKTI	GATC	4 cut(s)	126, 198, 265, 378
BstMBI	GATC	4 cut(s)	123, 195, 262, 375
BstMWI	GCNNNNNNNGC	2 cut(s)	62, 308
BstNI	CCWGG	1 cut(s)	269
BstNSI	RCATGY	1 cut(s)	72
BstSCI	CCNGG	2 cut(s)	22, 267
BstUI	CGCG	4 cut(s)	11, 62, 255, 387
BstV1I	GCAGC	2 cut(s)	229, 298
BstX2I	RGATCY	1 cut(s)	123
BstYI	RGATCY	1 cut(s)	123
BsuRI	GGCC	1 cut(s)	296
BtgI	CCRYGG	1 cut(s)	297
BtgZI	GCGATG	1 cut(s)	402
BtsCI	GGATG	1 cut(s)	47
BtsIMutI	CAGTG	2 cut(s)	246, 442
CseI	GACGC	1 cut(s)	244
CsiI	ACCWGGT	1 cut(s)	267
Csp6I	GTAC	1 cut(s)	366
CviAII	CATG	3 cut(s)	69, 160, 298
CviQI	GTAC	1 cut(s)	366
DdeI	CTNAG	1 cut(s)	319
DpnI	GATC	4 cut(s)	125, 197, 264, 377
DpnII	GATC	4 cut(s)	123, 195, 262, 375
Eco130I	CCWWGG	2 cut(s)	207, 297
EcoRII	CCWGG	1 cut(s)	267
EcoT14I	CCWWGG	2 cut(s)	207, 297
ErhI	CCWWGG	2 cut(s)	207, 297
FaeI	CATG	3 cut(s)	72, 163, 301
FaiI	YATR	7 cut(s)	53, 70, 147, 161, 299, 341, 413
FatI	CATG	3 cut(s)	68, 159, 297
Fnu4HI	GCNGC	3 cut(s)	63, 218, 312
FokI	GGATG	1 cut(s)	34
Fsp4HI	GCNGC	3 cut(s)	63, 218, 312
GluI	GCNGC	3 cut(s)	63, 218, 312
GsaI	CCCAGC	1 cut(s)	422
GsuI	CTGGAG	1 cut(s)	90
HaeIII	GGCC	1 cut(s)	296
HapII	CCGG	1 cut(s)	24
HgaI	GACGC	1 cut(s)	244
Hin1II	CATG	3 cut(s)	72, 163, 301
HinfI	GANTC	3 cut(s)	89, 203, 285
HpaII	CCGG	1 cut(s)	24
HphI	GGTGA	1 cut(s)	257
Hpy188I	TCNGA	1 cut(s)	176
Hpy188III	TCNNGA	2 cut(s)	107, 289
Hpy99I	CGWCG	1 cut(s)	260
HpyAV	CCTTC	3 cut(s)	107, 244, 286
HpyCH4III	ACNGT	2 cut(s)	370, 437
HpyCH4IV	ACGT	2 cut(s)	44, 168
HpyCH4V	TGCA	2 cut(s)	72, 217
HpyF10VI	GCNNNNNNNGC	2 cut(s)	62, 308
HpyF3I	CTNAG	1 cut(s)	319
HpySE526I	ACGT	2 cut(s)	44, 168
Hsp92II	CATG	3 cut(s)	72, 163, 301
Kzo9I	GATC	4 cut(s)	123, 195, 262, 375
LpnPI	CCDG	8 cut(s)	37, 120, 201, 254, 281, 302, 404, 429
Lsp1109I	GCAGC	2 cut(s)	229, 298
MabI	ACCWGGT	1 cut(s)	267
MaeII	ACGT	2 cut(s)	44, 168
MalI	GATC	4 cut(s)	125, 197, 264, 377
MboI	GATC	4 cut(s)	123, 195, 262, 375
MboII	GAAGA	2 cut(s)	272, 385
MfeI	CAATTG	1 cut(s)	79
MflI	RGATCY	1 cut(s)	123
MluCI	AATT	7 cut(s)	79, 111, 118, 359, 399, 427, 464
MlyI	GAGTC	2 cut(s)	83, 197
MnlI	CCTC	6 cut(s)	30, 111, 114, 193, 342, 433
MseI	TTAA	1 cut(s)	41
MslI	CAYNNNNRTG	1 cut(s)	410
MspI	CCGG	1 cut(s)	24
MspR9I	CCNGG	2 cut(s)	24, 269
MunI	CAATTG	1 cut(s)	79
MvaI	CCWGG	1 cut(s)	269
MvnI	CGCG	4 cut(s)	11, 62, 255, 387
MwoI	GCNNNNNNNGC	2 cut(s)	62, 308
NciI	CCSGG	1 cut(s)	24
NcoI	CCATGG	1 cut(s)	297
NdeII	GATC	4 cut(s)	123, 195, 262, 375
NlaIII	CATG	3 cut(s)	72, 163, 301
NlaIV	GGNNCC	1 cut(s)	125
NspI	RCATGY	1 cut(s)	72
PfeI	GAWTC	1 cut(s)	285
PflFI	GACNNNGTC	1 cut(s)	254
PflMI	CCANNNNNTGG	1 cut(s)	113
PkrI	GCNGC	3 cut(s)	64, 219, 313
PleI	GAGTC	2 cut(s)	83, 197
PpsI	GAGTC	2 cut(s)	83, 197
Ppu21I	YACGTR	1 cut(s)	169
Psp6I	CCWGG	1 cut(s)	267
PspFI	CCCAGC	1 cut(s)	418
PspGI	CCWGG	1 cut(s)	267
PspN4I	GGNNCC	1 cut(s)	125
PsuI	RGATCY	1 cut(s)	123
PsyI	GACNNNGTC	1 cut(s)	254
RsaI	GTAC	1 cut(s)	367
RsaNI	GTAC	1 cut(s)	366
RseI	CAYNNNNRTG	1 cut(s)	410
SaqAI	TTAA	1 cut(s)	41
SatI	GCNGC	3 cut(s)	63, 218, 312
Sau3AI	GATC	4 cut(s)	123, 195, 262, 375
SchI	GAGTC	2 cut(s)	83, 197
ScrFI	CCNGG	2 cut(s)	24, 269
SetI	ASST	8 cut(s)	47, 58, 144, 171, 246, 273, 320, 340
SexAI	ACCWGGT	1 cut(s)	267
SmiMI	CAYNNNNRTG	1 cut(s)	410
Sse9I	AATT	7 cut(s)	79, 111, 118, 359, 399, 427, 464
SsiI	CCGC	3 cut(s)	11, 62, 253
StyD4I	CCNGG	2 cut(s)	22, 267
StyI	CCWWGG	2 cut(s)	207, 297
TaaI	ACNGT	2 cut(s)	370, 437
TaiI	ACGT	2 cut(s)	47, 171
TaqI	TCGA	4 cut(s)	198, 237, 258, 327
TasI	AATT	7 cut(s)	79, 111, 118, 359, 399, 427, 464
TauI	GCSGC	1 cut(s)	65
TfiI	GAWTC	1 cut(s)	285
Tru1I	TTAA	1 cut(s)	41
Tru9I	TTAA	1 cut(s)	41
TscAI	CASTG	2 cut(s)	253, 442
TseI	GCWGC	2 cut(s)	217, 311
TspRI	CASTG	2 cut(s)	253, 442
Tth111I	GACNNNGTC	1 cut(s)	254
Van91I	CCANNNNNTGG	1 cut(s)	113
XceI	RCATGY	1 cut(s)	72
XcmI	CCANNNNNNNNNTGG	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.