RchiOBHm_Chr5g0047771

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0002916
Physical Location & Seq
Reverse (-)
44300416 .. 44303183
2768 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32564

Sequence Viewer

Length: 549 bp
ATGGAGTACTATATAAAGGAAATAACCTACTTCTCTCTTTTCTCCTTTTTCCTCTCTCAGGCCGCACACGCCCCCCCTCTCTCTCTCTCCCCAGCTCCCCCTTCTTCCTCTCACCTTCTCTCTGTCACGCCGGAAAGCTCGACTTCCGGCCGTCGACTTTTGGCACCGCCACCACCAAAAGATAGCCTAGGCGATGGAGAACAAAACCCAGCCACTCCACCCTCGATTGAGATCGCCGAACCACCGCACACGACCCCTAAAGCTACGCCGTCACTGTTCCTTAACCCTCTTCGATCTCCTACCATCTTTTCAACATATCGCCACCACCAACTTGCTCAAACTGATCCAAGCTTCAAAACCCAGGACTTTGCTAGACCACAGAGGCCGGAATACCATCAGACGACCCCATCGCTGGTGCTCTCAGCTCTGAGCTTTTCGTTCTTCAATCTCTGGCTTATTTGTCCTTACCGTGTAAACAACATGTCGAAGACACCTCTGTTTCCAGTGAAGAAAGAAGTAACAGCTCCCTCATTTAAGTTGAGAATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

182

Amino Acids

20.32

Weight (kDa)

9.3

Isoelectric Point (pI)

63.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 163
AccI GTMKAC 1 cut(s) 154
AciI CCGC 3 cut(s) 63, 167, 245
AclWI GGATC 1 cut(s) 338
AcoI YGGCCR 1 cut(s) 148
AfaI GTAC 1 cut(s) 8
AfiI CCNNNNNNNGG 2 cut(s) 58, 412
AflIII ACRYGT 1 cut(s) 480
AgsI TTSAA 3 cut(s) 312, 355, 445
AjnI CCWGG 1 cut(s) 360
AluBI AGCT 7 cut(s) 95, 138, 263, 351, 425, 432, 524
AluI AGCT 7 cut(s) 95, 138, 263, 351, 425, 432, 524
Alw21I GWGCWC 1 cut(s) 420
AlwI GGATC 1 cut(s) 338
AoxI GGCC 3 cut(s) 60, 148, 383
AspA2I CCTAGG 1 cut(s) 187
AsuHPI GGTGA 1 cut(s) 104
AvrII CCTAGG 1 cut(s) 187
BanI GGYRCC 1 cut(s) 163
BbsI GAAGAC 1 cut(s) 494
Bbv12I GWGCWC 1 cut(s) 420
BccI CCATC 4 cut(s) 188, 311, 402, 415
BceAI ACGGC 2 cut(s) 135, 253
BciT130I CCWGG 1 cut(s) 362
BfaI CTAG 2 cut(s) 188, 372
BisI GCNGC 1 cut(s) 63
BlnI CCTAGG 1 cut(s) 187
BlsI GCNGC 1 cut(s) 64
BmcAI AGTACT 1 cut(s) 8
Bme1390I CCNGG 1 cut(s) 362
BmiI GGNNCC 1 cut(s) 165
BmrFI CCNGG 1 cut(s) 362
BpiI GAAGAC 1 cut(s) 494
BsaBI GATNNNNATC 1 cut(s) 230
BsaJI CCNNGG 2 cut(s) 187, 360
Bsc4I CCNNNNNNNGG 2 cut(s) 58, 412
Bse1I ACTGG 1 cut(s) 503
Bse8I GATNNNNATC 1 cut(s) 230
BseBI CCWGG 1 cut(s) 362
BseDI CCNNGG 2 cut(s) 187, 360
BseJI GATNNNNATC 1 cut(s) 230
BseLI CCNNNNNNNGG 2 cut(s) 58, 412
BseMII CTCAG 3 cut(s) 71, 419, 435
BseNI ACTGG 1 cut(s) 503
BseX3I CGGCCG 1 cut(s) 148
BseYI CCCAGC 2 cut(s) 91, 208
Bsh1285I CGRYCG 1 cut(s) 151
BshFI GGCC 3 cut(s) 62, 150, 385
BshNI GGYRCC 1 cut(s) 163
BsiEI CGRYCG 1 cut(s) 151
BsiHKAI GWGCWC 1 cut(s) 420
BsiSI CCGG 3 cut(s) 131, 147, 386
BslI CCNNNNNNNGG 2 cut(s) 58, 412
BsnI GGCC 3 cut(s) 62, 150, 385
Bsp1286I GDGCHC 1 cut(s) 420
Bsp143I GATC 3 cut(s) 231, 293, 343
BspACI CCGC 3 cut(s) 63, 167, 245
BspANI GGCC 3 cut(s) 62, 150, 385
BspCNI CTCAG 3 cut(s) 70, 420, 434
BspLI GGNNCC 1 cut(s) 165
BspPI GGATC 1 cut(s) 338
BspT107I GGYRCC 1 cut(s) 163
BsrI ACTGG 1 cut(s) 503
BssECI CCNNGG 2 cut(s) 187, 360
BssMI GATC 3 cut(s) 231, 293, 343
BssT1I CCWWGG 1 cut(s) 187
Bst2UI CCWGG 1 cut(s) 362
Bst4CI ACNGT 2 cut(s) 276, 470
Bst6I CTCTTC 1 cut(s) 294
BstDEI CTNAG 3 cut(s) 57, 421, 428
BstENI CCTNNNNNAGG 1 cut(s) 56
BstKTI GATC 3 cut(s) 234, 296, 346
BstMBI GATC 3 cut(s) 231, 293, 343
BstMCI CGRYCG 1 cut(s) 151
BstMWI GCNNNNNNNGC 1 cut(s) 68
BstNI CCWGG 1 cut(s) 362
BstNSI RCATGY 1 cut(s) 484
BstSCI CCNGG 1 cut(s) 360
BstV2I GAAGAC 1 cut(s) 494
BstZI CGGCCG 1 cut(s) 148
BsuRI GGCC 3 cut(s) 62, 150, 385
BtgZI GCGATG 2 cut(s) 207, 393
BtsIMutI CAGTG 2 cut(s) 272, 510
Csp6I GTAC 1 cut(s) 7
CviAII CATG 1 cut(s) 481
CviQI GTAC 1 cut(s) 7
DdeI CTNAG 3 cut(s) 57, 421, 428
DpnI GATC 3 cut(s) 233, 295, 345
DpnII GATC 3 cut(s) 231, 293, 343
EaeI YGGCCR 1 cut(s) 148
EagI CGGCCG 1 cut(s) 148
Eam1104I CTCTTC 1 cut(s) 294
EarI CTCTTC 1 cut(s) 294
EclXI CGGCCG 1 cut(s) 148
Eco130I CCWWGG 1 cut(s) 187
Eco52I CGGCCG 1 cut(s) 148
EcoNI CCTNNNNNAGG 1 cut(s) 56
EcoRII CCWGG 1 cut(s) 360
EcoT14I CCWWGG 1 cut(s) 187
ErhI CCWWGG 1 cut(s) 187
FaeI CATG 1 cut(s) 484
FaiI YATR 5 cut(s) 12, 14, 316, 482, 547
FalI AAGNNNNNCTT 2 cut(s) 127, 159
FatI CATG 1 cut(s) 480
FblI GTMKAC 1 cut(s) 154
Fnu4HI GCNGC 1 cut(s) 63
Fsp4HI GCNGC 1 cut(s) 63
FspBI CTAG 2 cut(s) 188, 372
GluI GCNGC 1 cut(s) 63
GsaI CCCAGC 2 cut(s) 95, 212
HaeIII GGCC 3 cut(s) 62, 150, 385
HapII CCGG 3 cut(s) 131, 147, 386
Hin1II CATG 1 cut(s) 484
HincII GTYRAC 1 cut(s) 155
HindII GTYRAC 1 cut(s) 155
HindIII AAGCTT 1 cut(s) 349
HpaII CCGG 3 cut(s) 131, 147, 386
HphI GGTGA 1 cut(s) 104
Hpy166II GTNNAC 2 cut(s) 155, 475
Hpy188I TCNGA 2 cut(s) 399, 429
Hpy8I GTNNAC 2 cut(s) 155, 475
Hpy99I CGWCG 1 cut(s) 156
HpyAV CCTTC 2 cut(s) 111, 125
HpyCH4III ACNGT 2 cut(s) 276, 470
HpyF10VI GCNNNNNNNGC 1 cut(s) 68
HpyF3I CTNAG 3 cut(s) 57, 421, 428
Hsp92II CATG 1 cut(s) 484
Kzo9I GATC 3 cut(s) 231, 293, 343
LmnI GCTCC 2 cut(s) 100, 529
MaeI CTAG 2 cut(s) 188, 372
MaeIII GTNAC 3 cut(s) 124, 270, 517
MalI GATC 3 cut(s) 233, 295, 345
MboI GATC 3 cut(s) 231, 293, 343
MboII GAAGA 5 cut(s) 96, 281, 433, 499, 520
MhlI GDGCHC 1 cut(s) 420
MnlI CCTC 8 cut(s) 62, 87, 118, 232, 297, 375, 504, 538
MseI TTAA 2 cut(s) 282, 534
MspI CCGG 3 cut(s) 131, 147, 386
MspR9I CCNGG 1 cut(s) 362
MvaI CCWGG 1 cut(s) 362
MwoI GCNNNNNNNGC 1 cut(s) 68
NdeII GATC 3 cut(s) 231, 293, 343
NlaIII CATG 1 cut(s) 484
NlaIV GGNNCC 1 cut(s) 165
NmuCI GTSAC 2 cut(s) 124, 270
NspI RCATGY 1 cut(s) 484
PciI ACATGT 1 cut(s) 480
PkrI GCNGC 1 cut(s) 64
PscI ACATGT 1 cut(s) 480
Psp6I CCWGG 1 cut(s) 360
PspFI CCCAGC 2 cut(s) 91, 208
PspGI CCWGG 1 cut(s) 360
PspN4I GGNNCC 1 cut(s) 165
RsaI GTAC 1 cut(s) 8
RsaNI GTAC 1 cut(s) 7
SalI GTCGAC 1 cut(s) 153
SaqAI TTAA 2 cut(s) 282, 534
SatI GCNGC 1 cut(s) 63
Sau3AI GATC 3 cut(s) 231, 293, 343
ScaI AGTACT 1 cut(s) 8
ScrFI CCNGG 1 cut(s) 362
SduI GDGCHC 1 cut(s) 420
SsiI CCGC 3 cut(s) 63, 167, 245
SspMI CTAG 2 cut(s) 188, 372
StyD4I CCNGG 1 cut(s) 360
StyI CCWWGG 1 cut(s) 187
TaaI ACNGT 2 cut(s) 276, 470
TaqI TCGA 5 cut(s) 140, 154, 224, 292, 485
TatI WGTACW 1 cut(s) 6
TauI GCSGC 1 cut(s) 65
Tru1I TTAA 2 cut(s) 282, 534
Tru9I TTAA 2 cut(s) 282, 534
TscAI CASTG 2 cut(s) 279, 510
TseFI GTSAC 2 cut(s) 124, 270
Tsp45I GTSAC 2 cut(s) 124, 270
TspRI CASTG 2 cut(s) 279, 510
XagI CCTNNNNNAGG 1 cut(s) 56
XceI RCATGY 1 cut(s) 484
XmaJI CCTAGG 1 cut(s) 187
XmiI GTMKAC 1 cut(s) 154
XspI CTAG 2 cut(s) 188, 372
ZrmI AGTACT 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.