Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0002916

Physical Location & Seq

Genomic Coordinates Forward (+)

64353188 .. 64361818

Gene Structure 8631 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G040610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2763 bp

ATGGCGGATTCCGGAGCACAGCGTCCGGCCGAAGAGTCGTCGTCGTTCCCCGATTTGCTGAAGAACACGCCGTCGAACATTCGGAGATTGGAAGATGAGATTGAGCAGTGTAAGGGCCACCAGAAGTATCTAGCGCAGACTTTGAGCCCTTCTGACGGTGGCGACGTCCGGTGGTACTTTAACAAGGTCCCTCTGGGAGAGAATGAGCTGGCTGCTTCAGTTCCGAGGACTGAGATAGTGGGGAAGGGGGAGTATTTTCGTTTCGGCATGAGGGACTCTCTGGCAATTGAGGCCTCGTTTTTGCAGAGGGAGGAAGAGTTGCTTTCTTCTTGGTGGAGAGAGTATGCAGAATGCAGTGAGGGTCCGAAAGAGCGGCCTAGTTCCAGTAAGAAAGTGGATGAGAAGGCTCGCTCGGTTCCATTGTATGAAGAGGAAGAAGAGAGAGTCGGTGTCCCTGTTAAGGGAGGGCTTTATGAAGTAGATTTAGTGAAGCGGCATTGTTTCCCTGTTTATTGGGATGGAGAAAACCGGCGTGTCTTAAGAGGCCACTGGTTTGCTCGTAAAGGGGTTGATTGGCTGCCTCTTCGTGAAGATGTTGCTGAACAATTGGAAATCGCATATCGCAGCCAGGTTTGGCATCGGAGAACTTTTCAGCCCTCTGGACTTTTTGCAGCTCGAGTTGATTTGCAAGGCTCTATCTATGGATTGCATGTGCTTTTCACTGGAGAAGATAATACTTGGGAGGCTTGGCTCAATGCAGATGCTTCTGGTTTTTCTAATGTCATTTCTTTCAGCGGAAATGGAATTAAGTTACGGCGTGGATATTCTGCATCTCACTCTCCAAAACCCACTCAGAATGAATTACGTCAGCAGAAGGAGGAGAAAATGGATGATTATTGTTCACAGGTTCCTGTTCAACATCTTGTGTTCATGGTTCATGGTATTGGTCAAAGATTGGAAAAATCCAATTTGGTTGATGACGTCGGTAATTTCCACCATATAACAGCAAGTCTTGCCGAAACACACCTTACTTCACTCCAACGTGATAGTCAGAGGGTTCTTTTTATACCATGCCAGTGGAGAAAGGGTTTGAAGCTTAGTGGTGAAACTGCAGTGGAAAAATGTACTTTAGACGGTGTGAAGGGTTTGCGTGTCATGCTGAGTGCGACTGTTCATGATGTGTTATACTACATGAGCCCCATATATTGTCAGGACATCATTAACTCGGTATCCAATCAATTAAATCGGTTGTATTTAAAATTTCTTAGGAGGAACCCAGGTTATGATGGAAAGGTTTCCATATATGGTCATTCTTTGGGAAGTGTTCTCTCTTATGATATCCTTTGTCATCAAGAGAATTTGTCCTCCCCATTTCCAATGGATTGGATGTACAAAGAACATGCTAGAAATGAAGAATCTTCTCCTGATATGAACAACCAATCACCTACCGATGACTCTCTTACTAATTTGGGAGATGCAGTCTCTTCTGTATATAATCAAACTGATGACATGGGTTCAATTCTTGAAGGAAAATTGAATGCACAACCAACTCTATTAATGCATGAGGAGGGAAATGCTATAGATGTGTGTAATGTTGCGAGTTGTGAGACATCAGATTTGAATGAGTTTAATGCAAGGTCTATGGACTCGAAACAAATGCAGGGTAACAATTATGTGCATGAATCAGTTTGTGAATCTGGCGACAAGTTTAAACAGGATATCTCGGATGAAACTACTAGAATGGAATGTGGAGTCCCAGTTGATCACATAGAGAAAGTGGTTGAAGAATTTGAAGAAACGAGCAATAAAGATGAAGTAGTCAAATCGCTGAGGGAGGAGATTGATTCTCTAAAAGCCAAAATAGCAGAACTGGAAACTAAATGTGGTGGTAGAGATGGTAGTCCAGGATTGTATCAAGAAAATGAAGAGGTTCTTGCAACTACACCGCAGAGATCCATATCGGAGAAATTACCTCCCAGGCTAGAGGGCTCAACTCAGAGTTATACCCCTTATATCAAATACACGAAACTTGAATTCAAGGTTGATACATTTTTTGCAGTTGGATCACCCCTTGGGGTCTTCCTGGCCCTTCGTAATATTCGTATTGGAATTGGCAAGGGGAAAGACTATTGGGAAGAGGAAAATATAAGTGAGGAGATGCCAGCTTGTCGGCAAATGTTCAACATATTTCACCCCTTTGATCCTGTTGCATATAGGATAGAGCCACTTGTGTGTAAAGAATACCTCGGCAAGCGACCTGTTATCATACCCTACCACAAAGGTGGAAAGAGGTTGCATATTGGATTTCAGGAATTTACTGAAGAGTTAGCTGCTCGTTCTCAAGCAATAATGGATCATCTAAACTTTGTAAAAGTTAAAGTTCTGACAGTTTGCCAGTCAAGAAACACGGAAAGCCTAGAAGAAGCAGCAGAAAATGCCGAAGAACAAGAGGAGAGATCATATGGTACTCTTATGATGGAAAGGATAACTGGAAGTGAAGAAGGACGGATAGATCATGTGCTTCAAGACAAGACATTTGAACATCCATATATTTCTGCAATTGGAGCACATACAAACTATTGGAGGGATTACGATACTGCCCTTTTCATAATGAAACACTTGTATCGCGGTATAGATGAAGACAACTTACCTGCGGAATCTAGTAGGAAAAATTCAAAAGATAAGATGGGTTTCCCTGGCTGGTCAGATCAAATAGGGACAGTAGATGAGGAGCTTCCTTTGACATTCTCTGAAAGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0004806 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005793 GO:0005794 GO:0005798 GO:0005801 GO:0005815 GO:0005829 GO:0005856 GO:0006810 GO:0006888 GO:0008150 GO:0012505 GO:0015630 GO:0016192 GO:0016298 GO:0016787 GO:0016788 GO:0030134 GO:0030135 GO:0031410 GO:0031982 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0052689 GO:0097708

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDHD

Protein Analysis

920

Amino Acids

104.75

Weight (kDa)

5.2

Isoelectric Point (pI)

57.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DDHD	PF02862	677 - 816	2.7e-33	DDHD domain
DDHD	PF02862	805 - 875	2.4e-13	DDHD domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002916)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31480
fragaria_vesca	FvH4_2g35070 FvH4_2g35070 FvH4_2g35070 FvH4_2g35070 FvH4_2g35070 FvH4_2g35070 FvH4_2g35070 FvH4_2g35070 FvH4_2g35070 FvH4_2g35070 FvH4_2g35070 FvH4_2g35070
malus_domestica	MD08G1108000.v1.1 MD15G1088500.v1.1
prunus_persica	Prupe.1G442600_v2.0.a1
pyrus_communis	pycom08g09000 pycom15g08300
rosa_chinensis	RchiOBHm_Chr5g0047771 RchiOBHm_Chr6g0306901
rosa_laevigata	RLG00000010756
rosa_multiflora	Rmu_sc0019304.1_g000001
rosa_roxburghii	Rroxscaffold_7G00161360
rosa_rugosa	Rorug01G0166300 Rorug01G0480900 Rorug01G0480900 Rorug01G0481000 Rorug01G0481100 Rorug06G0354100 Rorug06G0354100 Rorug06G0354100 Rorug06G0354200
rosa_samantha	Rh5AG270400 Rh6AG465800 Rh6BG435000 Rh6CG480400 Rh6DG467300
rosa_wichuraiana	Rw6G040610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	168, 984
Acc36I	ACCTGC	1 cut(s)	2659
AccBSI	CCGCTC	1 cut(s)	373
AccII	CGCG	1 cut(s)	2628
AccIII	TCCGGA	1 cut(s)	11
AciI	CCGC	7 cut(s)	5, 373, 493, 795, 1946, 2628, 2654
AclWI	GGATC	4 cut(s)	1947, 2071, 2195, 2361
AcoI	YGGCCR	1 cut(s)	27
AcsI	RAATTY	6 cut(s)	1259, 1357, 1787, 2033, 2312, 2671
AcuI	CTGAAG	3 cut(s)	80, 201, 2340
AcyI	GRCGYC	2 cut(s)	165, 981
AfaI	GTAC	4 cut(s)	176, 1126, 1391, 2467
AfiI	CCNNNNNNNGG	3 cut(s)	155, 460, 461
AflII	CTTAAG	1 cut(s)	538
AjnI	CCWGG	6 cut(s)	627, 1276, 1903, 1976, 2082, 2695
AleI	CACNNNNGTG	2 cut(s)	2230, 2280
AluBI	AGCT	6 cut(s)	208, 674, 1096, 2165, 2330, 2734
AluI	AGCT	6 cut(s)	208, 674, 1096, 2165, 2330, 2734
Alw21I	GWGCWC	2 cut(s)	19, 2569
Alw26I	GTCTC	2 cut(s)	1486, 1601
AlwI	GGATC	4 cut(s)	1947, 2071, 2195, 2361
Ama87I	CYCGRG	1 cut(s)	675
Aor13HI	TCCGGA	1 cut(s)	11
AoxI	GGCC	6 cut(s)	27, 115, 291, 374, 544, 2085
ApeKI	GCWGC	6 cut(s)	212, 577, 624, 671, 2330, 2426
ApoI	RAATTY	6 cut(s)	1259, 1357, 1787, 2033, 2312, 2671
ArsI	GACNNNNNNTTYG	4 cut(s)	1600, 1632, 2519, 2551
AseI	ATTAAT	1 cut(s)	1556
Asp700I	GAANNNNTTC	2 cut(s)	1294, 1929
AspLEI	GCGC	1 cut(s)	136
AspS9I	GGNCC	4 cut(s)	115, 187, 362, 2086
AsuHPI	GGTGA	4 cut(s)	1115, 1434, 2058, 2183
AvaI	CYCGRG	1 cut(s)	675
AvaII	GGWCC	2 cut(s)	187, 362
BaeI	ACNNNNGTAYC	2 cut(s)	2606, 2639
BanII	GRGCYC	3 cut(s)	149, 1199, 1991
BarI	GAAGNNNNNNTAC	2 cut(s)	2631, 2663
BbsI	GAAGAC	2 cut(s)	2071, 2646
Bbv12I	GWGCWC	2 cut(s)	19, 2569
BbvCI	CCTCAGC	1 cut(s)	1829
BbvI	GCAGC	6 cut(s)	199, 564, 636, 683, 2317, 2438
BccI	CCATC	5 cut(s)	512, 1280, 1889, 2470, 2680
BceAI	ACGGC	2 cut(s)	55, 830
BcgI	CGANNNNNNTGC	2 cut(s)	1639, 1673
BciT130I	CCWGG	6 cut(s)	629, 1278, 1905, 1978, 2084, 2697
BciVI	GTATCC	1 cut(s)	1240
BclI	TGATCA	1 cut(s)	1762
BcoDI	GTCTC	2 cut(s)	1486, 1601
BfaI	CTAG	7 cut(s)	131, 378, 1404, 1737, 1982, 2417, 2661
BfmI	CTRYAG	2 cut(s)	1110, 1578
BfrI	CTTAAG	1 cut(s)	538
BfuAI	ACCTGC	1 cut(s)	2659
BfuI	GTATCC	1 cut(s)	1240
BisI	GCNGC	8 cut(s)	213, 374, 494, 578, 625, 672, 2331, 2427
BlsI	GCNGC	8 cut(s)	214, 375, 495, 579, 626, 673, 2332, 2428
Bme1390I	CCNGG	6 cut(s)	629, 1278, 1905, 1978, 2084, 2697
Bme18I	GGWCC	2 cut(s)	187, 362
BmeT110I	CYCGRG	1 cut(s)	675
BmgT120I	GGNCC	4 cut(s)	115, 187, 362, 2086
BmiI	GGNNCC	5 cut(s)	189, 363, 417, 909, 1274
BmrFI	CCNGG	6 cut(s)	629, 1278, 1905, 1978, 2084, 2697
BmrI	ACTGGG	1 cut(s)	1751
BmsI	GCATC	5 cut(s)	646, 751, 839, 1465, 2148
BmuI	ACTGGG	1 cut(s)	1751
BpiI	GAAGAC	2 cut(s)	2071, 2646
BplI	GAGNNNNNCTC	2 cut(s)	262, 294
BpmI	CTGGAG	1 cut(s)	744
Bpu10I	CCTNAGC	1 cut(s)	1829
BpuEI	CTTGAG	1 cut(s)	2325
BsaBI	GATNNNNATC	1 cut(s)	1957
BsaHI	GRCGYC	2 cut(s)	165, 981
BsaJI	CCNNGG	6 cut(s)	224, 1276, 1976, 2071, 2245, 2695
BsaWI	WCCGGW	2 cut(s)	11, 168
BsaXI	ACNNNNNCTCC	8 cut(s)	302, 332, 1072, 1102, 1464, 1494, 1743, 1773
Bsc4I	CCNNNNNNNGG	3 cut(s)	155, 460, 461
Bse118I	RCCGGY	1 cut(s)	528
Bse1I	ACTGG	8 cut(s)	384, 554, 727, 1075, 1757, 1875, 2395, 2494
Bse8I	GATNNNNATC	1 cut(s)	1957
BseAI	TCCGGA	1 cut(s)	11
BseBI	CCWGG	6 cut(s)	629, 1278, 1905, 1978, 2084, 2697
BseDI	CCNNGG	6 cut(s)	224, 1276, 1976, 2071, 2245, 2695
BseGI	GGATG	6 cut(s)	403, 523, 895, 1392, 1732, 2542
BseJI	GATNNNNATC	1 cut(s)	1957
BseLI	CCNNNNNNNGG	3 cut(s)	155, 460, 461
BseMII	CTCAG	5 cut(s)	222, 866, 1151, 1820, 2009
BseNI	ACTGG	8 cut(s)	384, 554, 727, 1075, 1757, 1875, 2395, 2494
BseRI	GAGGAG	6 cut(s)	893, 1580, 1850, 2168, 2465, 2744
BseX3I	CGGCCG	1 cut(s)	27
BseXI	GCAGC	6 cut(s)	199, 564, 636, 683, 2317, 2438
Bsh1236I	CGCG	1 cut(s)	2628
Bsh1285I	CGRYCG	1 cut(s)	30
BshFI	GGCC	6 cut(s)	29, 117, 293, 376, 546, 2087
BsiEI	CGRYCG	1 cut(s)	30
BsiHKAI	GWGCWC	2 cut(s)	19, 2569
BsiHKCI	CYCGRG	1 cut(s)	675
BsiSI	CCGG	4 cut(s)	12, 26, 169, 529
BslFI	GGGAC	5 cut(s)	173, 287, 437, 1739, 2731
BslI	CCNNNNNNNGG	3 cut(s)	155, 460, 461
BsmAI	GTCTC	2 cut(s)	1486, 1601
BsmFI	GGGAC	5 cut(s)	173, 287, 437, 1739, 2731
BsmI	GAATGC	2 cut(s)	356, 1543
BsnI	GGCC	6 cut(s)	29, 117, 293, 376, 546, 2087
BsoBI	CYCGRG	1 cut(s)	675
Bsp1286I	GDGCHC	5 cut(s)	19, 149, 1199, 1991, 2569
Bsp13I	TCCGGA	1 cut(s)	11
Bsp1407I	TGTACA	1 cut(s)	1389
Bsp143I	GATC	8 cut(s)	1762, 1952, 2063, 2200, 2353, 2456, 2512, 2707
BspACI	CCGC	7 cut(s)	5, 373, 493, 795, 1946, 2628, 2654
BspANI	GGCC	6 cut(s)	29, 117, 293, 376, 546, 2087
BspCNI	CTCAG	5 cut(s)	223, 865, 1152, 1821, 2008
BspEI	TCCGGA	1 cut(s)	11
BspFNI	CGCG	1 cut(s)	2628
BspHI	TCATGA	1 cut(s)	1174
BspLI	GGNNCC	5 cut(s)	189, 363, 417, 909, 1274
BspMAI	CTGCAG	1 cut(s)	1114
BspMI	ACCTGC	1 cut(s)	2659
BspPI	GGATC	4 cut(s)	1947, 2071, 2195, 2361
BspTI	CTTAAG	1 cut(s)	538
BsrBI	CCGCTC	1 cut(s)	373
BsrFI	RCCGGY	1 cut(s)	528
BsrGI	TGTACA	1 cut(s)	1389
BsrI	ACTGG	8 cut(s)	384, 554, 727, 1075, 1757, 1875, 2395, 2494
BssAI	RCCGGY	1 cut(s)	528
BssECI	CCNNGG	6 cut(s)	224, 1276, 1976, 2071, 2245, 2695
BssMI	GATC	8 cut(s)	1762, 1952, 2063, 2200, 2353, 2456, 2512, 2707
BssNI	GRCGYC	2 cut(s)	165, 981
BssT1I	CCWWGG	1 cut(s)	2071
Bst2UI	CCWGG	6 cut(s)	629, 1278, 1905, 1978, 2084, 2697
Bst4CI	ACNGT	5 cut(s)	158, 1136, 1171, 2389, 2722
Bst6I	CTCTTC	9 cut(s)	27, 309, 423, 432, 588, 1489, 1920, 2130, 2316
BstACI	GRCGYC	2 cut(s)	165, 981
BstAFI	CTTAAG	1 cut(s)	538
BstAPI	GCANNNNNTGC	2 cut(s)	1013, 2435
BstAUI	TGTACA	1 cut(s)	1389
BstC8I	GCNNGC	4 cut(s)	210, 409, 2163, 2252
BstDEI	CTNAG	7 cut(s)	231, 852, 1097, 1160, 1265, 1829, 1995
BstF5I	GGATG	6 cut(s)	403, 523, 895, 1392, 1732, 2542
BstFNI	CGCG	1 cut(s)	2628
BstHHI	GCGC	1 cut(s)	136
BstKTI	GATC	8 cut(s)	1765, 1955, 2066, 2203, 2356, 2459, 2515, 2710
BstMAI	GTCTC	2 cut(s)	1486, 1601
BstMBI	GATC	8 cut(s)	1762, 1952, 2063, 2200, 2353, 2456, 2512, 2707
BstMCI	CGRYCG	1 cut(s)	30
BstMWI	GCNNNNNNNGC	6 cut(s)	290, 1013, 1156, 1862, 2435, 2564
BstNI	CCWGG	6 cut(s)	629, 1278, 1905, 1978, 2084, 2697
BstNSI	RCATGY	2 cut(s)	713, 1403
BstSCI	CCNGG	6 cut(s)	627, 1276, 1903, 1976, 2082, 2695
BstSFI	CTRYAG	2 cut(s)	1110, 1578
BstUI	CGCG	1 cut(s)	2628
BstV1I	GCAGC	6 cut(s)	199, 564, 636, 683, 2317, 2438
BstV2I	GAAGAC	2 cut(s)	2071, 2646
BstX2I	RGATCY	1 cut(s)	1952
BstXI	CCANNNNNNTGG	3 cut(s)	1077, 1383, 2282
BstYI	RGATCY	1 cut(s)	1952
BstZI	CGGCCG	1 cut(s)	27
BsuI	GTATCC	1 cut(s)	1240
BsuRI	GGCC	6 cut(s)	29, 117, 293, 376, 546, 2087
BtsCI	GGATG	6 cut(s)	403, 523, 895, 1392, 1732, 2542
BtsI	GCAGTG	3 cut(s)	113, 361, 1119
BtsIMutI	CAGTG	6 cut(s)	113, 361, 547, 720, 1082, 1119
BveI	ACCTGC	1 cut(s)	2659
Cac8I	GCNNGC	4 cut(s)	210, 409, 2163, 2252
CciI	TCATGA	1 cut(s)	1174
CfoI	GCGC	1 cut(s)	136
Cfr10I	RCCGGY	1 cut(s)	528
Cfr13I	GGNCC	4 cut(s)	115, 187, 362, 2086
CseI	GACGC	1 cut(s)	11
Csp6I	GTAC	4 cut(s)	175, 1125, 1390, 2466
CviQI	GTAC	4 cut(s)	175, 1125, 1390, 2466
DdeI	CTNAG	7 cut(s)	231, 852, 1097, 1160, 1265, 1829, 1995
DpnI	GATC	8 cut(s)	1764, 1954, 2065, 2202, 2355, 2458, 2514, 2709
DpnII	GATC	8 cut(s)	1762, 1952, 2063, 2200, 2353, 2456, 2512, 2707
DraI	TTTAAA	2 cut(s)	1257, 1711
EaeI	YGGCCR	1 cut(s)	27
EagI	CGGCCG	1 cut(s)	27
Eam1104I	CTCTTC	9 cut(s)	27, 309, 423, 432, 588, 1489, 1920, 2130, 2316
EarI	CTCTTC	9 cut(s)	27, 309, 423, 432, 588, 1489, 1920, 2130, 2316
EciI	GGCGGA	1 cut(s)	20
EclXI	CGGCCG	1 cut(s)	27
Eco130I	CCWWGG	1 cut(s)	2071
Eco147I	AGGCCT	1 cut(s)	293
Eco24I	GRGCYC	3 cut(s)	149, 1199, 1991
Eco32I	GATATC	2 cut(s)	1339, 1720
Eco47I	GGWCC	2 cut(s)	187, 362
Eco52I	CGGCCG	1 cut(s)	27
Eco57I	CTGAAG	3 cut(s)	80, 201, 2340
Eco88I	CYCGRG	1 cut(s)	675
EcoO109I	RGGNCCY	1 cut(s)	187
EcoRI	GAATTC	1 cut(s)	2033
EcoRII	CCWGG	6 cut(s)	627, 1276, 1903, 1976, 2082, 2695
EcoRV	GATATC	2 cut(s)	1339, 1720
EcoT14I	CCWWGG	1 cut(s)	2071
EcoT22I	ATGCAT	1 cut(s)	1563
EcoT38I	GRGCYC	3 cut(s)	149, 1199, 1991
ErhI	CCWWGG	1 cut(s)	2071
FalI	AAGNNNNNCTT	4 cut(s)	306, 338, 1917, 1949
FaqI	GGGAC	5 cut(s)	173, 287, 437, 1739, 2731
FauNDI	CATATG	1 cut(s)	2461
FbaI	TGATCA	1 cut(s)	1762
Fnu4HI	GCNGC	8 cut(s)	213, 374, 494, 578, 625, 672, 2331, 2427
FokI	GGATG	6 cut(s)	410, 530, 902, 1399, 1739, 2529
FriOI	GRGCYC	3 cut(s)	149, 1199, 1991
Fsp4HI	GCNGC	8 cut(s)	213, 374, 494, 578, 625, 672, 2331, 2427
FspBI	CTAG	7 cut(s)	131, 378, 1404, 1737, 1982, 2417, 2661
GlaI	GCGC	1 cut(s)	135
GluI	GCNGC	8 cut(s)	213, 374, 494, 578, 625, 672, 2331, 2427
GsuI	CTGGAG	1 cut(s)	744
HaeIII	GGCC	6 cut(s)	29, 117, 293, 376, 546, 2087
HapII	CCGG	4 cut(s)	12, 26, 169, 529
HgaI	GACGC	1 cut(s)	11
HhaI	GCGC	1 cut(s)	136
Hin1I	GRCGYC	2 cut(s)	165, 981
Hin6I	GCGC	1 cut(s)	134
HinP1I	GCGC	1 cut(s)	134
HindIII	AAGCTT	1 cut(s)	1094
HpaII	CCGG	4 cut(s)	12, 26, 169, 529
HphI	GGTGA	4 cut(s)	1115, 1434, 2058, 2183
Hpy166II	GTNNAC	1 cut(s)	902
Hpy8I	GTNNAC	1 cut(s)	902
Hpy99I	CGWCG	5 cut(s)	43, 46, 76, 167, 986
HpyAV	CCTTC	8 cut(s)	159, 238, 397, 868, 1135, 1520, 2099, 2495
HpyCH4III	ACNGT	5 cut(s)	158, 1136, 1171, 2389, 2722
HpyCH4IV	ACGT	4 cut(s)	165, 865, 981, 1042
HpyF10VI	GCNNNNNNNGC	6 cut(s)	290, 1013, 1156, 1862, 2435, 2564
HpyF3I	CTNAG	7 cut(s)	231, 852, 1097, 1160, 1265, 1829, 1995
HpySE526I	ACGT	4 cut(s)	165, 865, 981, 1042
Hsp92I	GRCGYC	2 cut(s)	165, 981
HspAI	GCGC	1 cut(s)	134
Kpn2I	TCCGGA	1 cut(s)	11
Ksp22I	TGATCA	1 cut(s)	1762
Kzo9I	GATC	8 cut(s)	1762, 1952, 2063, 2200, 2353, 2456, 2512, 2707
LmnI	GCTCC	3 cut(s)	14, 2564, 2731
Lsp1109I	GCAGC	6 cut(s)	199, 564, 636, 683, 2317, 2438
LweI	GCATC	5 cut(s)	646, 751, 839, 1465, 2148
MaeI	CTAG	7 cut(s)	131, 378, 1404, 1737, 1982, 2417, 2661
MaeII	ACGT	4 cut(s)	165, 865, 981, 1042
MaeIII	GTNAC	2 cut(s)	810, 1664
MalI	GATC	8 cut(s)	1764, 1954, 2065, 2202, 2355, 2458, 2514, 2709
MbiI	CCGCTC	1 cut(s)	373
MboI	GATC	8 cut(s)	1762, 1952, 2063, 2200, 2353, 2456, 2512, 2707
MfeI	CAATTG	3 cut(s)	285, 605, 2559
MflI	RGATCY	1 cut(s)	1952
MhlI	GDGCHC	5 cut(s)	19, 149, 1199, 1991, 2569
MlyI	GAGTC	6 cut(s)	44, 269, 453, 1448, 1640, 1761
MmeI	TCCRAC	2 cut(s)	1063, 2041
Mph1103I	ATGCAT	1 cut(s)	1563
MroI	TCCGGA	1 cut(s)	11
MroXI	GAANNNNTTC	2 cut(s)	1294, 1929
MslI	CAYNNNNRTG	3 cut(s)	1075, 2230, 2280
MspA1I	CMGCKG	1 cut(s)	795
MspCI	CTTAAG	1 cut(s)	538
MspI	CCGG	4 cut(s)	12, 26, 169, 529
MspR9I	CCNGG	6 cut(s)	629, 1278, 1905, 1978, 2084, 2697
MssI	GTTTAAAC	1 cut(s)	1711
MunI	CAATTG	3 cut(s)	285, 605, 2559
Mva1269I	GAATGC	2 cut(s)	356, 1543
MvaI	CCWGG	6 cut(s)	629, 1278, 1905, 1978, 2084, 2697
MvnI	CGCG	1 cut(s)	2628
MwoI	GCNNNNNNNGC	6 cut(s)	290, 1013, 1156, 1862, 2435, 2564
NdeI	CATATG	1 cut(s)	2461
NdeII	GATC	8 cut(s)	1762, 1952, 2063, 2200, 2353, 2456, 2512, 2707
NlaIV	GGNNCC	5 cut(s)	189, 363, 417, 909, 1274
NmeAIII	GCCGAG	1 cut(s)	2226
NsiI	ATGCAT	1 cut(s)	1563
NspI	RCATGY	2 cut(s)	713, 1403
OliI	CACNNNNGTG	2 cut(s)	2230, 2280
PaeR7I	CTCGAG	1 cut(s)	675
PagI	TCATGA	1 cut(s)	1174
PceI	AGGCCT	1 cut(s)	293
PcsI	WCGNNNNNNNCGW	2 cut(s)	162, 2098
PctI	GAATGC	2 cut(s)	356, 1543
PdmI	GAANNNNTTC	2 cut(s)	1294, 1929
PfeI	GAWTC	6 cut(s)	8, 1415, 1682, 1694, 1844, 2657
PfoI	TCCNGGA	1 cut(s)	1903
PkrI	GCNGC	8 cut(s)	214, 375, 495, 579, 626, 673, 2332, 2428
PleI	GAGTC	6 cut(s)	43, 269, 452, 1448, 1640, 1760
PmeI	GTTTAAAC	1 cut(s)	1711
PpsI	GAGTC	6 cut(s)	43, 269, 452, 1448, 1640, 1760
PpuMI	RGGWCCY	1 cut(s)	187
PshBI	ATTAAT	1 cut(s)	1556
Psp5II	RGGWCCY	1 cut(s)	187
Psp6I	CCWGG	6 cut(s)	627, 1276, 1903, 1976, 2082, 2695
PspGI	CCWGG	6 cut(s)	627, 1276, 1903, 1976, 2082, 2695
PspN4I	GGNNCC	5 cut(s)	189, 363, 417, 909, 1274
PspPI	GGNCC	4 cut(s)	115, 187, 362, 2086
PspPPI	RGGWCCY	1 cut(s)	187
PspXI	VCTCGAGB	1 cut(s)	675
PstI	CTGCAG	1 cut(s)	1114
PsuI	RGATCY	1 cut(s)	1952
RsaI	GTAC	4 cut(s)	176, 1126, 1391, 2467
RsaNI	GTAC	4 cut(s)	175, 1125, 1390, 2466
RseI	CAYNNNNRTG	3 cut(s)	1075, 2230, 2280
SatI	GCNGC	8 cut(s)	213, 374, 494, 578, 625, 672, 2331, 2427
Sau3AI	GATC	8 cut(s)	1762, 1952, 2063, 2200, 2353, 2456, 2512, 2707
Sau96I	GGNCC	4 cut(s)	115, 187, 362, 2086
SchI	GAGTC	6 cut(s)	44, 269, 453, 1448, 1640, 1761
ScrFI	CCNGG	6 cut(s)	629, 1278, 1905, 1978, 2084, 2697
SduI	GDGCHC	5 cut(s)	19, 149, 1199, 1991, 2569
SfaNI	GCATC	5 cut(s)	646, 751, 839, 1465, 2148
SfcI	CTRYAG	2 cut(s)	1110, 1578
Sfr274I	CTCGAG	1 cut(s)	675
SinI	GGWCC	2 cut(s)	187, 362
SlaI	CTCGAG	1 cut(s)	675
SmiMI	CAYNNNNRTG	3 cut(s)	1075, 2230, 2280
SmlI	CTYRAG	3 cut(s)	538, 675, 2340
SmoI	CTYRAG	3 cut(s)	538, 675, 2340
SseBI	AGGCCT	1 cut(s)	293
SsiI	CCGC	7 cut(s)	5, 373, 493, 795, 1946, 2628, 2654
SspI	AATATT	1 cut(s)	2098
SspMI	CTAG	7 cut(s)	131, 378, 1404, 1737, 1982, 2417, 2661
StuI	AGGCCT	1 cut(s)	293
StyD4I	CCNGG	6 cut(s)	627, 1276, 1903, 1976, 2082, 2695
StyI	CCWWGG	1 cut(s)	2071
TaaI	ACNGT	5 cut(s)	158, 1136, 1171, 2389, 2722
TaiI	ACGT	4 cut(s)	168, 868, 984, 1045
TaqI	TCGA	3 cut(s)	74, 676, 1649
TatI	WGTACW	2 cut(s)	1124, 1389
TauI	GCSGC	2 cut(s)	376, 496
TfiI	GAWTC	6 cut(s)	8, 1415, 1682, 1694, 1844, 2657
TscAI	CASTG	6 cut(s)	113, 361, 554, 727, 1082, 1119
TseI	GCWGC	6 cut(s)	212, 577, 624, 671, 2330, 2426
TspGWI	ACGGA	2 cut(s)	2423, 2521
TspRI	CASTG	6 cut(s)	113, 361, 554, 727, 1082, 1119
Vha464I	CTTAAG	1 cut(s)	538
VpaK11BI	GGWCC	2 cut(s)	187, 362
VspI	ATTAAT	1 cut(s)	1556
XapI	RAATTY	6 cut(s)	1259, 1357, 1787, 2033, 2312, 2671
XceI	RCATGY	2 cut(s)	713, 1403
XcmI	CCANNNNNNNNNTGG	1 cut(s)	391
XhoI	CTCGAG	1 cut(s)	675
XmnI	GAANNNNTTC	2 cut(s)	1294, 1929
XspI	CTAG	7 cut(s)	131, 378, 1404, 1737, 1982, 2417, 2661
ZraI	GACGTC	2 cut(s)	166, 982
Zsp2I	ATGCAT	1 cut(s)	1563

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.