Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002916

Physical Location & Seq

Genomic Coordinates Forward (+)

56899495 .. 56902086

Gene Structure 2592 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0481100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGCAGACCAACATGTTCCCTTCACATGAAGAAAAGTTGGATGATGAGTATAGCTTCGAGGGACCAGAAGAAAAGCTAGAGACAGAAGCAATACACTTTGAGTTGCCACCGGAAAGTAGCAGGAGAAGAACTTTTAGCAGCAGCACTAGCAGGGTGGATAACATATGGACGAATACAAAGGGATGGTTAGGGGGGGAATCCATAACTAGCTTATTAAGACGGAGCAGAGCCAAGAAGAAAGAGGATGTTCGACTTCAAACAGCAAGCATTCATGCTGCCCTTTCCGTCACACGCTTGGCTGCAGCAATCGCAAGTGTTGCTGCAGCCAAGAGCAGCATAGACTCAGAATCAGAATCAGCACAAGATATTGGCAATCAAGGTACGGTACTTCAATCAAGGAACAACGTAGACGACATTTTTGCTTCTGCAGCAGCTCTGGTTACCACAGTTTGTGCTGAAGCTGCTGAGTCATTGGGGGCGCAGACAATCGATGTTTCTTCTGCCATTAACTCAGGCTGGGCTACCCAAACAACTGGCGACATGATCACACTCACAGCTGATGCTGCAACATGTTTAAGAGGAGTTGCAGCACTCAAAGCAAGAGCCAAGGCCGATGCGTATTTTCCAAGAACCCAAACTTTTCCTCAAGTAAAAGCAGAGCTATCTGTCGTCACTCCTTCTGGAAGCAAAATATACGGCTGGGCCTCCATATATTCAAAGCATAGTCAGCTCATTTTGAGCCTCCAGAAGAAGCATTTGAGATTCTTAGCCACAACAAAGGAATACAAGATTTTGCGTGTGGAGGAGGGAACAAGGGAAGCTCAGGGAAACCTTTCAATCAGCCTAAGGAGCAACAGTGGATACATCAAGCTCTTATTCAAAGATGAAAATCAATCTTTAGTCTGGACGACAAGCATTTCTAGTCTCTTACAGTTGCATTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0004806 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005793 GO:0005794 GO:0005798 GO:0005801 GO:0005815 GO:0005829 GO:0005856 GO:0006810 GO:0006888 GO:0008150 GO:0012505 GO:0015630 GO:0016192 GO:0016298 GO:0016787 GO:0016788 GO:0030134 GO:0030135 GO:0031410 GO:0031982 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0052689 GO:0097708

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDHD

Protein Analysis

314

Amino Acids

34.3

Weight (kDa)

7.03

Isoelectric Point (pI)

46.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_canalis	PF05703	51 - 205	9.8e-37	Auxin canalisation
PH_2	PF08458	221 - 312	6e-07	Plant pleckstrin homology-like region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002916)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31480
fragaria_vesca	FvH4_2g35070 FvH4_2g35070 FvH4_2g35070 FvH4_2g35070 FvH4_2g35070 FvH4_2g35070 FvH4_2g35070 FvH4_2g35070 FvH4_2g35070 FvH4_2g35070 FvH4_2g35070 FvH4_2g35070
malus_domestica	MD08G1108000.v1.1 MD15G1088500.v1.1
prunus_persica	Prupe.1G442600_v2.0.a1
pyrus_communis	pycom08g09000 pycom15g08300
rosa_chinensis	RchiOBHm_Chr5g0047771 RchiOBHm_Chr6g0306901
rosa_laevigata	RLG00000010756
rosa_multiflora	Rmu_sc0019304.1_g000001
rosa_roxburghii	Rroxscaffold_7G00161360
rosa_rugosa	Rorug01G0166300 Rorug01G0480900 Rorug01G0480900 Rorug01G0481000 Rorug01G0481100 Rorug06G0354100 Rorug06G0354100 Rorug06G0354100 Rorug06G0354200
rosa_samantha	Rh5AG270400 Rh6AG465800 Rh6BG435000 Rh6CG480400 Rh6DG467300
rosa_wichuraiana	Rw6G040610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	408
AcuI	CTGAAG	1 cut(s)	477
AfaI	GTAC	2 cut(s)	382, 387
AflIII	ACRYGT	2 cut(s)	12, 569
AgsI	TTSAA	5 cut(s)	257, 392, 717, 837, 880
Alw26I	GTCTC	2 cut(s)	74, 929
AoxI	GGCC	2 cut(s)	609, 702
ArsI	GACNNNNNNTTYG	2 cut(s)	401, 433
Asp700I	GAANNNNTTC	1 cut(s)	832
AspLEI	GCGC	1 cut(s)	481
AspS9I	GGNCC	2 cut(s)	62, 702
AvaII	GGWCC	1 cut(s)	62
AxyI	CCTNAGG	1 cut(s)	845
BccI	CCATC	1 cut(s)	177
BceAI	ACGGC	1 cut(s)	712
BcgI	CGANNNNNNTGC	2 cut(s)	401, 435
BciVI	GTATCC	1 cut(s)	854
BclI	TGATCA	1 cut(s)	543
BcoDI	GTCTC	2 cut(s)	74, 929
BfaI	CTAG	4 cut(s)	77, 147, 207, 921
BfmI	CTRYAG	3 cut(s)	300, 321, 426
BfuI	GTATCC	1 cut(s)	854
Bme18I	GGWCC	1 cut(s)	62
BmgT120I	GGNCC	2 cut(s)	62, 702
BmiI	GGNNCC	1 cut(s)	63
BmsI	GCATC	2 cut(s)	550, 604
BpmI	CTGGAG	1 cut(s)	728
Bpu10I	CCTNAGC	1 cut(s)	822
BpuEI	CTTGAG	1 cut(s)	630
Bsa29I	ATCGAT	1 cut(s)	489
BsaBI	GATNNNNATC	1 cut(s)	888
BsaJI	CCNNGG	1 cut(s)	606
BsaWI	WCCGGW	1 cut(s)	109
BsaXI	ACNNNNNCTCC	2 cut(s)	841, 871
Bse1I	ACTGG	1 cut(s)	538
Bse21I	CCTNAGG	1 cut(s)	845
Bse8I	GATNNNNATC	1 cut(s)	888
BseCI	ATCGAT	1 cut(s)	489
BseDI	CCNNGG	1 cut(s)	606
BseGI	GGATG	3 cut(s)	46, 188, 250
BseJI	GATNNNNATC	1 cut(s)	888
BseMII	CTCAG	4 cut(s)	357, 456, 525, 836
BseNI	ACTGG	1 cut(s)	538
BseRI	GAGGAG	2 cut(s)	594, 818
BseYI	CCCAGC	2 cut(s)	516, 699
BshFI	GGCC	2 cut(s)	611, 704
BshVI	ATCGAT	1 cut(s)	489
BsiSI	CCGG	1 cut(s)	110
BslFI	GGGAC	1 cut(s)	75
BsmAI	GTCTC	2 cut(s)	74, 929
BsmFI	GGGAC	1 cut(s)	75
BsmI	GAATGC	1 cut(s)	267
BsnI	GGCC	2 cut(s)	611, 704
Bsp143I	GATC	1 cut(s)	543
BspANI	GGCC	2 cut(s)	611, 704
BspCNI	CTCAG	4 cut(s)	356, 457, 524, 835
BspDI	ATCGAT	1 cut(s)	489
BspLI	GGNNCC	1 cut(s)	63
BspMAI	CTGCAG	3 cut(s)	304, 325, 430
BsrI	ACTGG	1 cut(s)	538
BssECI	CCNNGG	1 cut(s)	606
BssMI	GATC	1 cut(s)	543
BssT1I	CCWWGG	1 cut(s)	606
Bst4CI	ACNGT	4 cut(s)	385, 448, 857, 933
BstAPI	GCANNNNNTGC	1 cut(s)	317
BstC8I	GCNNGC	1 cut(s)	265
BstDEI	CTNAG	6 cut(s)	343, 465, 511, 766, 822, 845
BstEII	GGTNACC	1 cut(s)	439
BstF5I	GGATG	3 cut(s)	46, 188, 250
BstHHI	GCGC	1 cut(s)	481
BstKTI	GATC	1 cut(s)	546
BstMAI	GTCTC	2 cut(s)	74, 929
BstMBI	GATC	1 cut(s)	543
BstMWI	GCNNNNNNNGC	9 cut(s)	147, 308, 317, 428, 461, 563, 596, 727, 849
BstNSI	RCATGY	2 cut(s)	16, 573
BstPI	GGTNACC	1 cut(s)	439
BstSFI	CTRYAG	3 cut(s)	300, 321, 426
BstXI	CCANNNNNNTGG	1 cut(s)	533
Bsu15I	ATCGAT	1 cut(s)	489
Bsu36I	CCTNAGG	1 cut(s)	845
BsuI	GTATCC	1 cut(s)	854
BsuRI	GGCC	2 cut(s)	611, 704
BsuTUI	ATCGAT	1 cut(s)	489
BtsCI	GGATG	3 cut(s)	46, 188, 250
BtsIMutI	CAGTG	1 cut(s)	862
Cac8I	GCNNGC	1 cut(s)	265
CfoI	GCGC	1 cut(s)	481
Cfr13I	GGNCC	2 cut(s)	62, 702
ClaI	ATCGAT	1 cut(s)	489
Csp6I	GTAC	2 cut(s)	381, 386
CviAII	CATG	5 cut(s)	13, 26, 272, 541, 570
CviQI	GTAC	2 cut(s)	381, 386
DdeI	CTNAG	6 cut(s)	343, 465, 511, 766, 822, 845
DpnI	GATC	1 cut(s)	545
DpnII	GATC	1 cut(s)	543
Eco130I	CCWWGG	1 cut(s)	606
Eco47I	GGWCC	1 cut(s)	62
Eco57I	CTGAAG	1 cut(s)	477
Eco81I	CCTNAGG	1 cut(s)	845
Eco91I	GGTNACC	1 cut(s)	439
EcoO65I	GGTNACC	1 cut(s)	439
EcoT14I	CCWWGG	1 cut(s)	606
ErhI	CCWWGG	1 cut(s)	606
FaeI	CATG	5 cut(s)	16, 29, 275, 544, 573
FaqI	GGGAC	1 cut(s)	75
FatI	CATG	5 cut(s)	12, 25, 271, 540, 569
FauNDI	CATATG	1 cut(s)	164
FbaI	TGATCA	1 cut(s)	543
FblI	GTMKAC	1 cut(s)	408
FokI	GGATG	3 cut(s)	53, 195, 257
FspBI	CTAG	4 cut(s)	77, 147, 207, 921
GlaI	GCGC	1 cut(s)	480
GsaI	CCCAGC	2 cut(s)	520, 703
GsuI	CTGGAG	1 cut(s)	728
HaeIII	GGCC	2 cut(s)	611, 704
HapII	CCGG	1 cut(s)	110
HhaI	GCGC	1 cut(s)	481
Hin1II	CATG	5 cut(s)	16, 29, 275, 544, 573
Hin6I	GCGC	1 cut(s)	479
HinP1I	GCGC	1 cut(s)	479
HinfI	GANTC	6 cut(s)	197, 341, 347, 353, 467, 762
HpaII	CCGG	1 cut(s)	110
Hpy166II	GTNNAC	1 cut(s)	409
Hpy188I	TCNGA	2 cut(s)	346, 352
Hpy188III	TCNNGA	3 cut(s)	681, 745, 904
Hpy8I	GTNNAC	1 cut(s)	409
HpyAV	CCTTC	2 cut(s)	30, 687
HpyCH4III	ACNGT	4 cut(s)	385, 448, 857, 933
HpyCH4IV	ACGT	1 cut(s)	405
HpyCH4V	TGCA	7 cut(s)	4, 302, 323, 428, 566, 587, 937
HpyF10VI	GCNNNNNNNGC	9 cut(s)	147, 308, 317, 428, 461, 563, 596, 727, 849
HpyF3I	CTNAG	6 cut(s)	343, 465, 511, 766, 822, 845
HpySE526I	ACGT	1 cut(s)	405
Hsp92II	CATG	5 cut(s)	16, 29, 275, 544, 573
HspAI	GCGC	1 cut(s)	479
Ksp22I	TGATCA	1 cut(s)	543
Kzo9I	GATC	1 cut(s)	543
LmnI	GCTCC	2 cut(s)	222, 849
LweI	GCATC	2 cut(s)	550, 604
MaeI	CTAG	4 cut(s)	77, 147, 207, 921
MaeII	ACGT	1 cut(s)	405
MaeIII	GTNAC	3 cut(s)	286, 439, 670
MalI	GATC	1 cut(s)	545
MboI	GATC	1 cut(s)	543
MboII	GAAGA	6 cut(s)	41, 80, 138, 247, 489, 760
MlyI	GAGTC	2 cut(s)	335, 476
MmeI	TCCRAC	1 cut(s)	18
MnlI	CCTC	8 cut(s)	52, 235, 572, 654, 715, 752, 796, 799
MroXI	GAANNNNTTC	1 cut(s)	832
MseI	TTAA	3 cut(s)	215, 507, 575
MspA1I	CMGCKG	1 cut(s)	557
MspI	CCGG	1 cut(s)	110
Mva1269I	GAATGC	1 cut(s)	267
MwoI	GCNNNNNNNGC	9 cut(s)	147, 308, 317, 428, 461, 563, 596, 727, 849
NdeI	CATATG	1 cut(s)	164
NdeII	GATC	1 cut(s)	543
NlaIII	CATG	5 cut(s)	16, 29, 275, 544, 573
NlaIV	GGNNCC	1 cut(s)	63
NmuCI	GTSAC	2 cut(s)	286, 670
NspI	RCATGY	2 cut(s)	16, 573
PciI	ACATGT	2 cut(s)	12, 569
PctI	GAATGC	1 cut(s)	267
PdmI	GAANNNNTTC	1 cut(s)	832
PfeI	GAWTC	4 cut(s)	197, 347, 353, 762
PleI	GAGTC	2 cut(s)	335, 475
PpsI	GAGTC	2 cut(s)	335, 475
PscI	ACATGT	2 cut(s)	12, 569
PspEI	GGTNACC	1 cut(s)	439
PspFI	CCCAGC	2 cut(s)	516, 699
PspN4I	GGNNCC	1 cut(s)	63
PspPI	GGNCC	2 cut(s)	62, 702
PstI	CTGCAG	3 cut(s)	304, 325, 430
PvuII	CAGCTG	1 cut(s)	557
RsaI	GTAC	2 cut(s)	382, 387
RsaNI	GTAC	2 cut(s)	381, 386
SaqAI	TTAA	3 cut(s)	215, 507, 575
Sau3AI	GATC	1 cut(s)	543
Sau96I	GGNCC	2 cut(s)	62, 702
SchI	GAGTC	2 cut(s)	335, 476
SfaNI	GCATC	2 cut(s)	550, 604
SfcI	CTRYAG	3 cut(s)	300, 321, 426
SinI	GGWCC	1 cut(s)	62
SmlI	CTYRAG	1 cut(s)	645
SmoI	CTYRAG	1 cut(s)	645
SspMI	CTAG	4 cut(s)	77, 147, 207, 921
StyI	CCWWGG	1 cut(s)	606
TaaI	ACNGT	4 cut(s)	385, 448, 857, 933
TaiI	ACGT	1 cut(s)	408
TaqI	TCGA	3 cut(s)	57, 250, 489
TfiI	GAWTC	4 cut(s)	197, 347, 353, 762
Tru1I	TTAA	3 cut(s)	215, 507, 575
Tru9I	TTAA	3 cut(s)	215, 507, 575
TscAI	CASTG	1 cut(s)	862
TseFI	GTSAC	2 cut(s)	286, 670
Tsp45I	GTSAC	2 cut(s)	286, 670
TspDTI	ATGAA	3 cut(s)	42, 260, 900
TspGWI	ACGGA	2 cut(s)	235, 274
TspRI	CASTG	1 cut(s)	862
VpaK11BI	GGWCC	1 cut(s)	62
XceI	RCATGY	2 cut(s)	16, 573
XmiI	GTMKAC	1 cut(s)	408
XmnI	GAANNNNTTC	1 cut(s)	832
XspI	CTAG	4 cut(s)	77, 147, 207, 921

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.