Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0002916

Physical Location & Seq

Genomic Coordinates Forward (+)

63435468 .. 63445215

Gene Structure 9748 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG467300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2499 bp

ATGAGGGACTCTCTGGCAATCGAGGCCTCGTTTTTGCAGAGGGAGGAAGAGTTGCTTTCTTGTTGGTGGAGAGAGTATGCAGAATGCAGTGAAGGTCCGAAAGAGCGGCCTAGTTCCAGTAAGAAAGTGGATGAGAAGGCTCGTTCGGTTCCGTTGTATGAAGAGGAAGAAGAGAGAGTTGGTGTCCCTGTTAAGGGAGGGCTTTATGAAGTAGATTTAGTGAAGCGGCATTGTTTCCCTGTATATTGGGATGGAGAAAACCGGCGTGTCTTAAGAGGCCACTGGTTTGCTCGTAAAGGGGTTGATTGGCTGCCACTTCGTGAAAATGTTGCTGAACAATTGGAGATCGCATATCGCAGCCAGGTTTGGCATCGGAGAACTTTTCAGCCCTCTGGACTTTTTGCAGCTCGAGTTGATTTGCAAGGCTCTATCTATGGATTGCATGTGCTTTTCACTGGAGAAGATAATACTTGGGAGGCTTGGCTCAATGCAGATGCTTCTGGTTTTTCTAATGTCATTTCTTTCAGCGGAAATGGAATTAAGTTACGGCGTGGATATTCTGCATCTCACTCTCCAAAACCCACTCAGAATGAATTACGTCAGCAGAAGGAGGAGAAAATGGATGATTATTGTTCACAGATTCCTGTTCGACATCTTGTGTTCATGGTTCATGGTATTGGTCAAAGATTGGAAAAATCCAATTTGGTTGATGACGTCGGTAATTTTCACCATATAACAGCAAGTCTTGCCAAAACACACCTTACTTCACTCCAACGTGATACTCAGAGGGTTCTTTTCATACCATGCCAGTGGAGAAAGGGTTTGAAGCTTAGTGGTGAAACTGCAGTGGAAAAATGTACTTTAGACGGTGTGAAGGGTTTGCGTGTCATGCTGAGTGCGACTGTTCATGATGTGTTATACTACATGAGCCCCATATATTGTCAGGACATCATTAACTCGGTATCCAACCAATTAAATCGGTTATATTTAAAATTTCTTAGGAGGAACCCAGGTTATGATGGAAAGGTTTCCATATATGGTCATTCTTTGGGAAGTGTCCTCTCTTATGATATCCTTTGTCATCAAGAGAATTTGTCCTCCCCATTTCCAATGGATTGGATGTACAAAGAACATGCTAGAAATGAAGAATCTTCTCCTGATATGAACAACCAATCACCTACCGATGACTCTCTTACTAATTTGGGAGATGCAGTCTCTTTTGTATATAATCAAACTGATGACATGGGTTCAATTCTTGAAGGAAAATTGAATGCACAACCAACTCTATTAATGCATGAGGAGGGAAATGCTGTAGATGTGTGTAATGTTGCGAGTTGTGAGACATCAGATTTGAATGAGTTTAATGCAAGGTCTATGGACTCGAAACAAACGCAGGGTAACAATTACGTGCACGAATCAGTTTGTGAAGCTAGCGACAAGTTTAAACAGGATATCTCAGATGAAACTACTAGAATGGAATGTGGAGTCCCAGTTGATCACATAGAGAAAGTGGTTGAAGAAGTATGTGAAGAAACGAGCAATAAAGACGAAGTAGTCAAATCGCTGAGGGAGGAGATTGATTCTCTAAAAGCCAAAATAGCAGAACTGGAAACCAAATGTGGTGGTAGAGATGGTAGTCCTGGTTTGTATCAAGAAAATGAAGAGGTTCTTGCAACTTCGCCGCAGAGATCCATATCGGAGAAATTGCCTCCCAGGCAAGAGGGCTCAACTCAGAGTTATACCCCTTATATCAAATACACGAAACTTGAATTCAAGGTTGATACATTTTTTGCAGTTGGATCACCCCTTGGGGTCTTCCTGGCCCTTCGTAATATTCGTATTGGAATTGGCAAGGGGAAAGACTATTGGGAAGAGGAAAATATAAGTGAGGAGATGCCAGCTTGTCGGCAAATGTTCAACATATTTCACCCCTTTGATCCTGTTGCATATAGAATAGAGCCACTTGTGTGTAAAGAATACCTCGGCAAGCGACCTGTTATCATACCCTACCACAAAGGTGGAAAGAGGTTGCATATTGGATTTCAGGAATTTACTGAAGATTTAGCTGCTCGTTCTCAAGCAATAATGGATAATCTAAACTTCGTAAAAGTTAAAGTTCTGACAGTTTGCCAGTCAAGAAAGACGGATATCCTAGAAGAAGCAGCAGAAAATGCCGAAGAACGAGAGGAGAGATCATATGGTACTCTTATGATGGAAAGGATAACTGGAAGTGAAGAAGGACGGATAGATCATGTGCTTCAAGACAAGACATTTGAACATCCGTATATTTCTGCAATTGGAGCACATACAAACTATTGGAGGGATTACGATACTGCCCTTTTCATAATGAAACACTTGTATCGCGGTATAGATGAAGACAACTTACCTGCGGAATCTAGTAGGAAATATTCAAAAGATAAGATGGGTTTCCCTGGCTGGTCAGATCAAATAGGGACAGTAGATGAGGAGCTTCCTTTGACATTCTCTGAAAGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0004806 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005793 GO:0005794 GO:0005798 GO:0005801 GO:0005815 GO:0005829 GO:0005856 GO:0006810 GO:0006888 GO:0008150 GO:0012505 GO:0015630 GO:0016192 GO:0016298 GO:0016787 GO:0016788 GO:0030134 GO:0030135 GO:0031410 GO:0031982 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0052689 GO:0097708

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDHD

Protein Analysis

832

Amino Acids

95.06

Weight (kDa)

5.35

Isoelectric Point (pI)

55.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DDHD	PF02862	589 - 716	1.4e-32	DDHD domain
DDHD	PF02862	720 - 787	4.1e-13	DDHD domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002916)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31480
fragaria_vesca	FvH4_2g35070 FvH4_2g35070 FvH4_2g35070 FvH4_2g35070 FvH4_2g35070 FvH4_2g35070 FvH4_2g35070 FvH4_2g35070 FvH4_2g35070 FvH4_2g35070 FvH4_2g35070 FvH4_2g35070
malus_domestica	MD08G1108000.v1.1 MD15G1088500.v1.1
prunus_persica	Prupe.1G442600_v2.0.a1
pyrus_communis	pycom08g09000 pycom15g08300
rosa_chinensis	RchiOBHm_Chr5g0047771 RchiOBHm_Chr6g0306901
rosa_laevigata	RLG00000010756
rosa_multiflora	Rmu_sc0019304.1_g000001
rosa_roxburghii	Rroxscaffold_7G00161360
rosa_rugosa	Rorug01G0166300 Rorug01G0480900 Rorug01G0480900 Rorug01G0481000 Rorug01G0481100 Rorug06G0354100 Rorug06G0354100 Rorug06G0354100 Rorug06G0354200
rosa_samantha	Rh5AG270400 Rh6AG465800 Rh6BG435000 Rh6CG480400 Rh6DG467300
rosa_wichuraiana	Rw6G040610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1553
AatII	GACGTC	1 cut(s)	717
Acc36I	ACCTGC	1 cut(s)	2395
AccBSI	CCGCTC	1 cut(s)	106
AccII	CGCG	1 cut(s)	2364
AciI	CCGC	6 cut(s)	106, 226, 528, 1682, 2364, 2390
AclWI	GGATC	3 cut(s)	1683, 1807, 1931
AcsI	RAATTY	4 cut(s)	992, 1090, 1769, 2048
AcuI	CTGAAG	1 cut(s)	2076
AcyI	GRCGYC	1 cut(s)	714
AdeI	CACNNNGTG	1 cut(s)	320
AfaI	GTAC	3 cut(s)	859, 1124, 2203
AfiI	CCNNNNNNNGG	2 cut(s)	193, 194
AflII	CTTAAG	1 cut(s)	271
AjnI	CCWGG	6 cut(s)	360, 1009, 1639, 1712, 1818, 2431
AjuI	GAANNNNNNNTTGG	2 cut(s)	162, 194
AleI	CACNNNNGTG	2 cut(s)	1966, 2016
AluBI	AGCT	6 cut(s)	407, 829, 1430, 1901, 2066, 2470
AluI	AGCT	6 cut(s)	407, 829, 1430, 1901, 2066, 2470
Alw21I	GWGCWC	2 cut(s)	1413, 2305
Alw26I	GTCTC	2 cut(s)	1219, 1334
Alw44I	GTGCAC	1 cut(s)	1409
AlwI	GGATC	3 cut(s)	1683, 1807, 1931
Ama87I	CYCGRG	1 cut(s)	408
AoxI	GGCC	4 cut(s)	24, 107, 277, 1821
ApaLI	GTGCAC	1 cut(s)	1409
ApeKI	GCWGC	5 cut(s)	310, 357, 404, 2066, 2162
ApoI	RAATTY	4 cut(s)	992, 1090, 1769, 2048
ArsI	GACNNNNNNTTYG	4 cut(s)	1333, 1365, 2255, 2287
AseI	ATTAAT	1 cut(s)	1289
Asp700I	GAANNNNTTC	2 cut(s)	1027, 1665
AspS9I	GGNCC	2 cut(s)	95, 1822
AsuHPI	GGTGA	5 cut(s)	719, 848, 1167, 1794, 1919
AsuNHI	GCTAGC	1 cut(s)	1430
AvaI	CYCGRG	1 cut(s)	408
AvaII	GGWCC	1 cut(s)	95
BaeGI	GKGCMC	1 cut(s)	1413
BaeI	ACNNNNGTAYC	2 cut(s)	2342, 2375
BanII	GRGCYC	2 cut(s)	932, 1727
BarI	GAAGNNNNNNTAC	2 cut(s)	2367, 2399
BbsI	GAAGAC	2 cut(s)	1807, 2382
Bbv12I	GWGCWC	2 cut(s)	1413, 2305
BbvCI	CCTCAGC	1 cut(s)	1565
BbvI	GCAGC	5 cut(s)	297, 369, 416, 2053, 2174
BccI	CCATC	5 cut(s)	245, 1013, 1625, 2206, 2416
BceAI	ACGGC	1 cut(s)	563
BciT130I	CCWGG	6 cut(s)	362, 1011, 1641, 1714, 1820, 2433
BciVI	GTATCC	1 cut(s)	973
BclI	TGATCA	1 cut(s)	1495
BcoDI	GTCTC	2 cut(s)	1219, 1334
BfaI	CTAG	6 cut(s)	111, 1137, 1431, 1470, 2153, 2397
BfmI	CTRYAG	2 cut(s)	843, 1311
BfrI	CTTAAG	1 cut(s)	271
BfuAI	ACCTGC	1 cut(s)	2395
BfuI	GTATCC	1 cut(s)	973
BglI	GCCNNNNNGGC	1 cut(s)	1714
BisI	GCNGC	8 cut(s)	107, 227, 311, 358, 405, 1682, 2067, 2163
BlsI	GCNGC	8 cut(s)	108, 228, 312, 359, 406, 1683, 2068, 2164
Bme1390I	CCNGG	6 cut(s)	362, 1011, 1641, 1714, 1820, 2433
Bme18I	GGWCC	1 cut(s)	95
BmeT110I	CYCGRG	1 cut(s)	408
BmgT120I	GGNCC	2 cut(s)	95, 1822
BmiI	GGNNCC	2 cut(s)	150, 1007
BmrFI	CCNGG	6 cut(s)	362, 1011, 1641, 1714, 1820, 2433
BmrI	ACTGGG	1 cut(s)	1484
BmsI	GCATC	5 cut(s)	379, 484, 572, 1198, 1884
BmtI	GCTAGC	1 cut(s)	1434
BmuI	ACTGGG	1 cut(s)	1484
BpiI	GAAGAC	2 cut(s)	1807, 2382
BplI	GAGNNNNNCTC	1 cut(s)	27
BpmI	CTGGAG	1 cut(s)	477
Bpu10I	CCTNAGC	1 cut(s)	1565
BpuEI	CTTGAG	1 cut(s)	2061
BsaAI	YACGTR	1 cut(s)	1408
BsaBI	GATNNNNATC	1 cut(s)	1693
BsaHI	GRCGYC	1 cut(s)	714
BsaJI	CCNNGG	5 cut(s)	1009, 1712, 1807, 1981, 2431
BsaXI	ACNNNNNCTCC	8 cut(s)	35, 65, 805, 835, 1197, 1227, 1476, 1506
Bsc4I	CCNNNNNNNGG	2 cut(s)	193, 194
Bse118I	RCCGGY	1 cut(s)	261
Bse1I	ACTGG	8 cut(s)	117, 287, 460, 808, 1490, 1611, 2131, 2230
Bse8I	GATNNNNATC	1 cut(s)	1693
BseBI	CCWGG	6 cut(s)	362, 1011, 1641, 1714, 1820, 2433
BseDI	CCNNGG	5 cut(s)	1009, 1712, 1807, 1981, 2431
BseGI	GGATG	5 cut(s)	136, 256, 628, 1125, 2278
BseJI	GATNNNNATC	1 cut(s)	1693
BseLI	CCNNNNNNNGG	2 cut(s)	193, 194
BseMII	CTCAG	6 cut(s)	599, 797, 884, 1470, 1556, 1745
BseNI	ACTGG	8 cut(s)	117, 287, 460, 808, 1490, 1611, 2131, 2230
BseRI	GAGGAG	6 cut(s)	626, 1313, 1586, 1904, 2201, 2480
BseSI	GKGCMC	1 cut(s)	1413
BseXI	GCAGC	5 cut(s)	297, 369, 416, 2053, 2174
Bsh1236I	CGCG	1 cut(s)	2364
BshFI	GGCC	4 cut(s)	26, 109, 279, 1823
BsiHKAI	GWGCWC	2 cut(s)	1413, 2305
BsiHKCI	CYCGRG	1 cut(s)	408
BsiSI	CCGG	1 cut(s)	262
BslFI	GGGAC	4 cut(s)	20, 170, 1472, 2467
BslI	CCNNNNNNNGG	2 cut(s)	193, 194
BsmAI	GTCTC	2 cut(s)	1219, 1334
BsmFI	GGGAC	4 cut(s)	20, 170, 1472, 2467
BsmI	GAATGC	2 cut(s)	89, 1276
BsnI	GGCC	4 cut(s)	26, 109, 279, 1823
BsoBI	CYCGRG	1 cut(s)	408
Bsp1286I	GDGCHC	4 cut(s)	932, 1413, 1727, 2305
Bsp1407I	TGTACA	1 cut(s)	1122
Bsp143I	GATC	8 cut(s)	345, 1495, 1688, 1799, 1936, 2192, 2248, 2443
BspACI	CCGC	6 cut(s)	106, 226, 528, 1682, 2364, 2390
BspANI	GGCC	4 cut(s)	26, 109, 279, 1823
BspCNI	CTCAG	6 cut(s)	598, 796, 885, 1469, 1557, 1744
BspFNI	CGCG	1 cut(s)	2364
BspHI	TCATGA	1 cut(s)	907
BspLI	GGNNCC	2 cut(s)	150, 1007
BspMAI	CTGCAG	1 cut(s)	847
BspMI	ACCTGC	1 cut(s)	2395
BspOI	GCTAGC	1 cut(s)	1434
BspPI	GGATC	3 cut(s)	1683, 1807, 1931
BspTI	CTTAAG	1 cut(s)	271
BsrBI	CCGCTC	1 cut(s)	106
BsrFI	RCCGGY	1 cut(s)	261
BsrGI	TGTACA	1 cut(s)	1122
BsrI	ACTGG	8 cut(s)	117, 287, 460, 808, 1490, 1611, 2131, 2230
BssAI	RCCGGY	1 cut(s)	261
BssECI	CCNNGG	5 cut(s)	1009, 1712, 1807, 1981, 2431
BssMI	GATC	8 cut(s)	345, 1495, 1688, 1799, 1936, 2192, 2248, 2443
BssNI	GRCGYC	1 cut(s)	714
BssT1I	CCWWGG	1 cut(s)	1807
Bst2UI	CCWGG	6 cut(s)	362, 1011, 1641, 1714, 1820, 2433
Bst4CI	ACNGT	4 cut(s)	869, 904, 2125, 2458
Bst6I	CTCTTC	5 cut(s)	42, 156, 165, 1656, 1866
BstACI	GRCGYC	1 cut(s)	714
BstAFI	CTTAAG	1 cut(s)	271
BstAPI	GCANNNNNTGC	2 cut(s)	746, 2171
BstAUI	TGTACA	1 cut(s)	1122
BstBAI	YACGTR	1 cut(s)	1408
BstC8I	GCNNGC	3 cut(s)	1432, 1899, 1988
BstDEI	CTNAG	8 cut(s)	585, 783, 830, 893, 998, 1456, 1565, 1731
BstF5I	GGATG	5 cut(s)	136, 256, 628, 1125, 2278
BstFNI	CGCG	1 cut(s)	2364
BstKTI	GATC	8 cut(s)	348, 1498, 1691, 1802, 1939, 2195, 2251, 2446
BstMAI	GTCTC	2 cut(s)	1219, 1334
BstMBI	GATC	8 cut(s)	345, 1495, 1688, 1799, 1936, 2192, 2248, 2443
BstMWI	GCNNNNNNNGC	7 cut(s)	23, 746, 889, 1598, 1714, 2171, 2300
BstNI	CCWGG	6 cut(s)	362, 1011, 1641, 1714, 1820, 2433
BstNSI	RCATGY	2 cut(s)	446, 1136
BstSCI	CCNGG	6 cut(s)	360, 1009, 1639, 1712, 1818, 2431
BstSFI	CTRYAG	2 cut(s)	843, 1311
BstSLI	GKGCMC	1 cut(s)	1413
BstUI	CGCG	1 cut(s)	2364
BstV1I	GCAGC	5 cut(s)	297, 369, 416, 2053, 2174
BstV2I	GAAGAC	2 cut(s)	1807, 2382
BstX2I	RGATCY	1 cut(s)	1688
BstXI	CCANNNNNNTGG	3 cut(s)	810, 1116, 2018
BstYI	RGATCY	1 cut(s)	1688
BsuI	GTATCC	1 cut(s)	973
BsuRI	GGCC	4 cut(s)	26, 109, 279, 1823
BtsCI	GGATG	5 cut(s)	136, 256, 628, 1125, 2278
BtsI	GCAGTG	2 cut(s)	94, 852
BtsIMutI	CAGTG	5 cut(s)	94, 280, 453, 815, 852
BveI	ACCTGC	1 cut(s)	2395
Cac8I	GCNNGC	3 cut(s)	1432, 1899, 1988
CciI	TCATGA	1 cut(s)	907
Cfr10I	RCCGGY	1 cut(s)	261
Cfr13I	GGNCC	2 cut(s)	95, 1822
Csp6I	GTAC	3 cut(s)	858, 1123, 2202
CspCI	CAANNNNNGTGG	2 cut(s)	1603, 1638
CviQI	GTAC	3 cut(s)	858, 1123, 2202
DdeI	CTNAG	8 cut(s)	585, 783, 830, 893, 998, 1456, 1565, 1731
DpnI	GATC	8 cut(s)	347, 1497, 1690, 1801, 1938, 2194, 2250, 2445
DpnII	GATC	8 cut(s)	345, 1495, 1688, 1799, 1936, 2192, 2248, 2443
DraI	TTTAAA	2 cut(s)	990, 1444
DraIII	CACNNNGTG	1 cut(s)	320
DrdI	GACNNNNNNGTC	1 cut(s)	1553
DseDI	GACNNNNNNGTC	1 cut(s)	1553
Eam1104I	CTCTTC	5 cut(s)	42, 156, 165, 1656, 1866
EarI	CTCTTC	5 cut(s)	42, 156, 165, 1656, 1866
Eco130I	CCWWGG	1 cut(s)	1807
Eco147I	AGGCCT	1 cut(s)	26
Eco24I	GRGCYC	2 cut(s)	932, 1727
Eco32I	GATATC	3 cut(s)	1072, 1453, 2149
Eco47I	GGWCC	1 cut(s)	95
Eco57I	CTGAAG	1 cut(s)	2076
Eco88I	CYCGRG	1 cut(s)	408
EcoRI	GAATTC	1 cut(s)	1769
EcoRII	CCWGG	6 cut(s)	360, 1009, 1639, 1712, 1818, 2431
EcoRV	GATATC	3 cut(s)	1072, 1453, 2149
EcoT14I	CCWWGG	1 cut(s)	1807
EcoT22I	ATGCAT	1 cut(s)	1296
EcoT38I	GRGCYC	2 cut(s)	932, 1727
ErhI	CCWWGG	1 cut(s)	1807
FalI	AAGNNNNNCTT	4 cut(s)	39, 71, 1653, 1685
FaqI	GGGAC	4 cut(s)	20, 170, 1472, 2467
FauNDI	CATATG	1 cut(s)	2197
FbaI	TGATCA	1 cut(s)	1495
Fnu4HI	GCNGC	8 cut(s)	107, 227, 311, 358, 405, 1682, 2067, 2163
FokI	GGATG	5 cut(s)	143, 263, 635, 1132, 2265
FriOI	GRGCYC	2 cut(s)	932, 1727
Fsp4HI	GCNGC	8 cut(s)	107, 227, 311, 358, 405, 1682, 2067, 2163
FspBI	CTAG	6 cut(s)	111, 1137, 1431, 1470, 2153, 2397
GluI	GCNGC	8 cut(s)	107, 227, 311, 358, 405, 1682, 2067, 2163
GsuI	CTGGAG	1 cut(s)	477
HaeIII	GGCC	4 cut(s)	26, 109, 279, 1823
HapII	CCGG	1 cut(s)	262
Hin1I	GRCGYC	1 cut(s)	714
HindIII	AAGCTT	1 cut(s)	827
HinfI	GANTC	9 cut(s)	8, 640, 1148, 1187, 1379, 1415, 1485, 1580, 2393
HpaII	CCGG	1 cut(s)	262
HphI	GGTGA	5 cut(s)	719, 848, 1167, 1794, 1919
Hpy166II	GTNNAC	2 cut(s)	635, 1411
Hpy8I	GTNNAC	2 cut(s)	635, 1411
Hpy99I	CGWCG	1 cut(s)	719
HpyAV	CCTTC	7 cut(s)	86, 130, 601, 868, 1253, 1835, 2231
HpyCH4III	ACNGT	4 cut(s)	869, 904, 2125, 2458
HpyCH4IV	ACGT	4 cut(s)	598, 714, 775, 1407
HpyF10VI	GCNNNNNNNGC	7 cut(s)	23, 746, 889, 1598, 1714, 2171, 2300
HpyF3I	CTNAG	8 cut(s)	585, 783, 830, 893, 998, 1456, 1565, 1731
HpySE526I	ACGT	4 cut(s)	598, 714, 775, 1407
Hsp92I	GRCGYC	1 cut(s)	714
Ksp22I	TGATCA	1 cut(s)	1495
Kzo9I	GATC	8 cut(s)	345, 1495, 1688, 1799, 1936, 2192, 2248, 2443
LmnI	GCTCC	2 cut(s)	2300, 2467
Lsp1109I	GCAGC	5 cut(s)	297, 369, 416, 2053, 2174
LweI	GCATC	5 cut(s)	379, 484, 572, 1198, 1884
MaeI	CTAG	6 cut(s)	111, 1137, 1431, 1470, 2153, 2397
MaeII	ACGT	4 cut(s)	598, 714, 775, 1407
MaeIII	GTNAC	2 cut(s)	543, 1397
MalI	GATC	8 cut(s)	347, 1497, 1690, 1801, 1938, 2194, 2250, 2445
MbiI	CCGCTC	1 cut(s)	106
MboI	GATC	8 cut(s)	345, 1495, 1688, 1799, 1936, 2192, 2248, 2443
MfeI	CAATTG	2 cut(s)	338, 2295
MflI	RGATCY	1 cut(s)	1688
MhlI	GDGCHC	4 cut(s)	932, 1413, 1727, 2305
MlyI	GAGTC	4 cut(s)	2, 1181, 1373, 1494
MmeI	TCCRAC	3 cut(s)	796, 990, 1777
Mph1103I	ATGCAT	1 cut(s)	1296
MroXI	GAANNNNTTC	2 cut(s)	1027, 1665
MslI	CAYNNNNRTG	3 cut(s)	808, 1966, 2016
MspA1I	CMGCKG	1 cut(s)	528
MspCI	CTTAAG	1 cut(s)	271
MspI	CCGG	1 cut(s)	262
MspR9I	CCNGG	6 cut(s)	362, 1011, 1641, 1714, 1820, 2433
MssI	GTTTAAAC	1 cut(s)	1444
MunI	CAATTG	2 cut(s)	338, 2295
Mva1269I	GAATGC	2 cut(s)	89, 1276
MvaI	CCWGG	6 cut(s)	362, 1011, 1641, 1714, 1820, 2433
MvnI	CGCG	1 cut(s)	2364
MwoI	GCNNNNNNNGC	7 cut(s)	23, 746, 889, 1598, 1714, 2171, 2300
NdeI	CATATG	1 cut(s)	2197
NdeII	GATC	8 cut(s)	345, 1495, 1688, 1799, 1936, 2192, 2248, 2443
NheI	GCTAGC	1 cut(s)	1430
NlaIV	GGNNCC	2 cut(s)	150, 1007
NmeAIII	GCCGAG	1 cut(s)	1962
NsiI	ATGCAT	1 cut(s)	1296
NspI	RCATGY	2 cut(s)	446, 1136
OliI	CACNNNNGTG	2 cut(s)	1966, 2016
PaeR7I	CTCGAG	1 cut(s)	408
PagI	TCATGA	1 cut(s)	907
PceI	AGGCCT	1 cut(s)	26
PcsI	WCGNNNNNNNCGW	1 cut(s)	1834
PctI	GAATGC	2 cut(s)	89, 1276
PdmI	GAANNNNTTC	2 cut(s)	1027, 1665
PfeI	GAWTC	5 cut(s)	640, 1148, 1415, 1580, 2393
PkrI	GCNGC	8 cut(s)	108, 228, 312, 359, 406, 1683, 2068, 2164
PleI	GAGTC	4 cut(s)	2, 1181, 1373, 1493
PmeI	GTTTAAAC	1 cut(s)	1444
PpsI	GAGTC	4 cut(s)	2, 1181, 1373, 1493
Ppu21I	YACGTR	1 cut(s)	1408
PshBI	ATTAAT	1 cut(s)	1289
Psp6I	CCWGG	6 cut(s)	360, 1009, 1639, 1712, 1818, 2431
PspGI	CCWGG	6 cut(s)	360, 1009, 1639, 1712, 1818, 2431
PspN4I	GGNNCC	2 cut(s)	150, 1007
PspPI	GGNCC	2 cut(s)	95, 1822
PspXI	VCTCGAGB	1 cut(s)	408
PstI	CTGCAG	1 cut(s)	847
PsuI	RGATCY	1 cut(s)	1688
RsaI	GTAC	3 cut(s)	859, 1124, 2203
RsaNI	GTAC	3 cut(s)	858, 1123, 2202
RseI	CAYNNNNRTG	3 cut(s)	808, 1966, 2016
SatI	GCNGC	8 cut(s)	107, 227, 311, 358, 405, 1682, 2067, 2163
Sau3AI	GATC	8 cut(s)	345, 1495, 1688, 1799, 1936, 2192, 2248, 2443
Sau96I	GGNCC	2 cut(s)	95, 1822
SchI	GAGTC	4 cut(s)	2, 1181, 1373, 1494
ScrFI	CCNGG	6 cut(s)	362, 1011, 1641, 1714, 1820, 2433
SduI	GDGCHC	4 cut(s)	932, 1413, 1727, 2305
SfaNI	GCATC	5 cut(s)	379, 484, 572, 1198, 1884
SfcI	CTRYAG	2 cut(s)	843, 1311
Sfr274I	CTCGAG	1 cut(s)	408
SinI	GGWCC	1 cut(s)	95
SlaI	CTCGAG	1 cut(s)	408
SmiMI	CAYNNNNRTG	3 cut(s)	808, 1966, 2016
SmlI	CTYRAG	3 cut(s)	271, 408, 2076
SmoI	CTYRAG	3 cut(s)	271, 408, 2076
SseBI	AGGCCT	1 cut(s)	26
SsiI	CCGC	6 cut(s)	106, 226, 528, 1682, 2364, 2390
SspI	AATATT	2 cut(s)	1834, 2408
SspMI	CTAG	6 cut(s)	111, 1137, 1431, 1470, 2153, 2397
StuI	AGGCCT	1 cut(s)	26
StyD4I	CCNGG	6 cut(s)	360, 1009, 1639, 1712, 1818, 2431
StyI	CCWWGG	1 cut(s)	1807
TaaI	ACNGT	4 cut(s)	869, 904, 2125, 2458
TaiI	ACGT	4 cut(s)	601, 717, 778, 1410
TaqI	TCGA	4 cut(s)	21, 409, 649, 1382
TatI	WGTACW	2 cut(s)	857, 1122
TauI	GCSGC	3 cut(s)	109, 229, 1684
TfiI	GAWTC	5 cut(s)	640, 1148, 1415, 1580, 2393
TscAI	CASTG	5 cut(s)	94, 287, 460, 815, 852
TseI	GCWGC	5 cut(s)	310, 357, 404, 2066, 2162
TspGWI	ACGGA	4 cut(s)	141, 2159, 2257, 2271
TspRI	CASTG	5 cut(s)	94, 287, 460, 815, 852
Vha464I	CTTAAG	1 cut(s)	271
VneI	GTGCAC	1 cut(s)	1409
VpaK11BI	GGWCC	1 cut(s)	95
VspI	ATTAAT	1 cut(s)	1289
XapI	RAATTY	4 cut(s)	992, 1090, 1769, 2048
XceI	RCATGY	2 cut(s)	446, 1136
XcmI	CCANNNNNNNNNTGG	1 cut(s)	124
XhoI	CTCGAG	1 cut(s)	408
XmnI	GAANNNNTTC	2 cut(s)	1027, 1665
XspI	CTAG	6 cut(s)	111, 1137, 1431, 1470, 2153, 2397
ZraI	GACGTC	1 cut(s)	715
Zsp2I	ATGCAT	1 cut(s)	1296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.