Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002916

Physical Location & Seq

Genomic Coordinates Reverse (-)

4150113 .. 4159401

Gene Structure 9289 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00161360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2766 bp

ATGGCGGATTCCGAAGCACAGCGTCCGGCCGAAGAGTCGTCGTCGTTCCCTGATTTGCTGAAGAACACGCCGTCGAACATTCGGAGATTGGAAGATGAGATTGAGCAGTGTAAGGGCCACCAGAAGTATCTAGCGCAGACTTTGAGCCCTTCCGACGGTGGCGACGTCCGGTGGTACTTTAACAAGGTTCCTCTGGGAGAGAATGAGCTGGCTGCTTCAGTTCCGAGGACTGAGATAGTGGGGAAGGGGGAGTATTTTCGTTTCGGCATGAGGGACTCTCTGGCAATCGAGGCCTCGTTTTTGCAGAGGGAGGAAGAGTTGCTTTCTTGTTGGTGGAGAGAGTATGCAGAATGCAGTGAAGGTCCGAAAGAGCGGCCTAGTTCCAGTAATAAAGTGGATGAGAAGGCTCGTTCGGTTCCATTGTATGAAGAGGAAGAAGAGAGAGTTGGTGTCCCTGTTAAGGGAGGGCTTTATGAAGTAGATTTAGTGAAGCGGCATTGTTTTCCTGTTTATTGGGATGGAGAAAACCGGCGTGTCTTAAGAGGCCACTGGTTTGCTCGTAAAGGGGTTGATTGGCTGCCACTTCGTGAAGATGTTGCTGAACAATTGGAGATTGCGTATCGCAGCCAGGTTTGGCATCGGAGAACTTTTCAGCCCTCGGGACTTTTTGCAGCTCGAGTTGATTTGCAAGGCTCTATCTATGGATTGCATGTGCTTTTCACTGGAGAAGATAATACTTGGGAGGCTTGGCTCAATGCAGATGCTTCTGGTTTTTCTAATGTCATTTCTTTCAGCGGAAATGGAATTAAGTTACGGCGTGGATATTCTGCATCTCACTCTCCAAAACCCACTCAGAATGAATTACGTCAGCAGAAGGAGGAGAAAATGGATGATTATTGTTCACAGGTTCCTGTTCGACATCTTGTGTTCATGGTTCATGGTATTGGCCAAAGATTGGAAAAATCCAATTTGGTTGATGACGTCGGTAATTTCCACCATATAACAGCAAGTCTTGCCGAAACACACCTTACTTCACTCCAACGTGATAGTCAGAGGGTTCTTTTTATACCATGCCAGTGGAGAAAGGGTTTGAAGCTTAGTGGTGAAACTGCAGTGGAAAAATGTACTTTAGACGGTGTGAAGGGTTTGCGTGTCATGCTGAGTGCGACTGTTCATGATGTGTTATACTACATGAGCCCCATATATTGTCAGGACATCATTAATTCGGTATCCAACCAATTAAATCGGTTGTATTTAAAATTTCTTAGGAGGAACCCAGGATATGATGGAAAGGTTTCCATATATGGTCATTCTTTGGGAAGTGTCCTCTCTTATGATATCCTTTGTCATCAAGAGAATTTGTCCTCCCCATTTCCAATGGATTGGATGTACAAAGAACATGCTAGAAATGAAGAATCTTCTCCTGATATAAACAACCAATCACCTACCGATGACTCTCTTACTAATTTGGGAGATGCAGTCTCTTTTGTATATAATCAAACTGATGACATGGGTTCAATTCTTGAAGGAAAATTGAATGCACAACCAACTCTATTAATGCATGAGGAGGGAAATGCTGTAGATGTGTGTAATGTCGCGAGTTGTGAGACTTCAGATTTGAATGAGTTTAATGCAAGGTCTATGGACTCGAAACAAACGCAGGGTAACAATTATGTGCATGAATCAGTTTGTGAATCTGGCGACAAGTTTAAACAGGATATCTTGGATGAAACTACTAGAATGGAATGTGGAGTCCCAGTTGATCACATAGAGAAAGTGGTTGAAGAAGTATGTGAAGAAACGAGCAATAAAGACGAAGTCGTCAAATCGCTGAGGGAGGAGATTGATTCTCTAAAAGCCAAAATAGCAGAACTGGAAACCAAATGTGGTGGTAGAGATGGTAGTCCAGGATTGTATCAAGAAAATGAAGAGGTTCTTGCAACTACGCCGCAGAGATCCATATCGGAGAAATTGCCTCCCAGGCAAGAGGGCTCAACTCAGAGTTATACCCCTTATATCAAATACACGAAACTTGAATTCAAGGTTGATACATTTTTTGCAGTTGGATCACCCCTTGGGGTCTTCCTGGCCCTTCGTAATATTCGTATTGGAATTGGCAAGGGGAAAGACTATTGGGAAGAGGAAAATATAAGTGAGGAGATGCCAGCTTGTCGGCAAATGTTCAACATATTTCACCCCTTTGATCCTGTTGCATATAGAATAGAGCCACTTGTGTGTAAAGAATACCTCGGCAAGCGACCTGTTATCATACCCTACCACAAAGGTGGAAAGAGGTTGCATATTGGATTTCAGGAATTTACTGAAGATTTAGCTGCTCGTTCTCAGGCAATAATGGATCATCTAAACTTTGTAAAAGTTAAAGTTCTGACAGTTTGCCAGTCAAGAAACACGGATATCCTAGAAGAAGCAGCAGAAAATGCCGAAGAACGAGAGGAGAGATCATATGGTACTCTTATGATGGAAAGGATAACTGGAAGTGAAGAAGGACGGATAGATCATGTGCTTCAAGACAAGACATTTGAACATCCATATATTTCTGCAATTGGAGCACATACAAACTATTGGAGGGATTACGATACTGCCCTTTTCATAATGAAACACTTGTATCGCGGTATGGATGAAGACAACTTACCTGCGGAATCTAGTAGGAAAAATTCAAAAGATAAGATGGGTTTCCCTGGCTGGTCAGATCAAATAGGGATAGTAGATGAGGAGCTTCCTTTGACATTCTCTGAAAGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0004806 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005793 GO:0005794 GO:0005798 GO:0005801 GO:0005815 GO:0005829 GO:0005856 GO:0006810 GO:0006888 GO:0008150 GO:0012505 GO:0015630 GO:0016192 GO:0016298 GO:0016787 GO:0016788 GO:0030134 GO:0030135 GO:0031410 GO:0031982 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0052689 GO:0097708

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDHD

Protein Analysis

921

Amino Acids

105.0

Weight (kDa)

5.2

Isoelectric Point (pI)

58.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DDHD	PF02862	678 - 793	2.4e-32	DDHD domain
DDHD	PF02862	809 - 876	4.3e-13	DDHD domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002916)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31480
fragaria_vesca	FvH4_2g35070 FvH4_2g35070 FvH4_2g35070 FvH4_2g35070 FvH4_2g35070 FvH4_2g35070 FvH4_2g35070 FvH4_2g35070 FvH4_2g35070 FvH4_2g35070 FvH4_2g35070 FvH4_2g35070
malus_domestica	MD08G1108000.v1.1 MD15G1088500.v1.1
prunus_persica	Prupe.1G442600_v2.0.a1
pyrus_communis	pycom08g09000 pycom15g08300
rosa_chinensis	RchiOBHm_Chr5g0047771 RchiOBHm_Chr6g0306901
rosa_laevigata	RLG00000010756
rosa_multiflora	Rmu_sc0019304.1_g000001
rosa_roxburghii	Rroxscaffold_7G00161360
rosa_rugosa	Rorug01G0166300 Rorug01G0480900 Rorug01G0480900 Rorug01G0481000 Rorug01G0481100 Rorug06G0354100 Rorug06G0354100 Rorug06G0354100 Rorug06G0354200
rosa_samantha	Rh5AG270400 Rh6AG465800 Rh6BG435000 Rh6CG480400 Rh6DG467300
rosa_wichuraiana	Rw6G040610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1820
AatII	GACGTC	2 cut(s)	168, 984
Acc36I	ACCTGC	1 cut(s)	2662
AccB7I	CCANNNNNTGG	1 cut(s)	955
AccBSI	CCGCTC	1 cut(s)	373
AccII	CGCG	2 cut(s)	1598, 2631
AciI	CCGC	7 cut(s)	5, 373, 493, 795, 1949, 2631, 2657
AclWI	GGATC	4 cut(s)	1950, 2074, 2198, 2364
AcoI	YGGCCR	2 cut(s)	27, 946
AcsI	RAATTY	5 cut(s)	1259, 1357, 2036, 2315, 2674
AcuI	CTGAAG	4 cut(s)	80, 201, 1596, 2343
AcyI	GRCGYC	2 cut(s)	165, 981
AdeI	CACNNNGTG	1 cut(s)	587
AfaI	GTAC	4 cut(s)	176, 1126, 1391, 2470
AfiI	CCNNNNNNNGG	4 cut(s)	155, 460, 461, 955
AflII	CTTAAG	1 cut(s)	538
AjnI	CCWGG	6 cut(s)	627, 1276, 1906, 1979, 2085, 2698
AjuI	GAANNNNNNNTTGG	2 cut(s)	429, 461
AleI	CACNNNNGTG	2 cut(s)	2233, 2283
AluBI	AGCT	6 cut(s)	208, 674, 1096, 2168, 2333, 2737
AluI	AGCT	6 cut(s)	208, 674, 1096, 2168, 2333, 2737
Alw21I	GWGCWC	1 cut(s)	2572
Alw26I	GTCTC	2 cut(s)	1486, 1601
AlwI	GGATC	4 cut(s)	1950, 2074, 2198, 2364
Ama87I	CYCGRG	2 cut(s)	658, 675
AoxI	GGCC	7 cut(s)	27, 115, 291, 374, 544, 946, 2088
ApeKI	GCWGC	6 cut(s)	212, 577, 624, 671, 2333, 2429
ApoI	RAATTY	5 cut(s)	1259, 1357, 2036, 2315, 2674
ArsI	GACNNNNNNTTYG	4 cut(s)	1600, 1632, 2522, 2554
AseI	ATTAAT	2 cut(s)	1221, 1556
Asp700I	GAANNNNTTC	2 cut(s)	1294, 1932
AspLEI	GCGC	1 cut(s)	136
AspS9I	GGNCC	3 cut(s)	115, 362, 2089
AsuHPI	GGTGA	4 cut(s)	1115, 1434, 2061, 2186
AvaI	CYCGRG	2 cut(s)	658, 675
AvaII	GGWCC	1 cut(s)	362
BaeI	ACNNNNGTAYC	2 cut(s)	2609, 2642
BalI	TGGCCA	1 cut(s)	948
BanII	GRGCYC	3 cut(s)	149, 1199, 1994
BarI	GAAGNNNNNNTAC	2 cut(s)	2634, 2666
BbsI	GAAGAC	2 cut(s)	2074, 2649
Bbv12I	GWGCWC	1 cut(s)	2572
BbvCI	CCTCAGC	1 cut(s)	1832
BbvI	GCAGC	6 cut(s)	199, 564, 636, 683, 2320, 2441
BccI	CCATC	5 cut(s)	512, 1280, 1892, 2473, 2683
BceAI	ACGGC	2 cut(s)	55, 830
BciT130I	CCWGG	6 cut(s)	629, 1278, 1908, 1981, 2087, 2700
BciVI	GTATCC	1 cut(s)	1240
BclI	TGATCA	1 cut(s)	1762
BcoDI	GTCTC	2 cut(s)	1486, 1601
BfaI	CTAG	6 cut(s)	131, 378, 1404, 1737, 2420, 2664
BfmI	CTRYAG	2 cut(s)	1110, 1578
BfrI	CTTAAG	1 cut(s)	538
BfuAI	ACCTGC	1 cut(s)	2662
BfuI	GTATCC	1 cut(s)	1240
BglI	GCCNNNNNGGC	1 cut(s)	1981
BisI	GCNGC	9 cut(s)	213, 374, 494, 578, 625, 672, 1949, 2334, 2430
BlsI	GCNGC	9 cut(s)	214, 375, 495, 579, 626, 673, 1950, 2335, 2431
Bme1390I	CCNGG	6 cut(s)	629, 1278, 1908, 1981, 2087, 2700
Bme18I	GGWCC	1 cut(s)	362
BmeT110I	CYCGRG	2 cut(s)	658, 675
BmgT120I	GGNCC	3 cut(s)	115, 362, 2089
BmiI	GGNNCC	4 cut(s)	189, 417, 909, 1274
BmrFI	CCNGG	6 cut(s)	629, 1278, 1908, 1981, 2087, 2700
BmrI	ACTGGG	1 cut(s)	1751
BmsI	GCATC	5 cut(s)	646, 751, 839, 1465, 2151
BmuI	ACTGGG	1 cut(s)	1751
BpiI	GAAGAC	2 cut(s)	2074, 2649
BplI	GAGNNNNNCTC	2 cut(s)	262, 294
BpmI	CTGGAG	1 cut(s)	744
Bpu10I	CCTNAGC	1 cut(s)	1832
BsaBI	GATNNNNATC	1 cut(s)	1960
BsaHI	GRCGYC	2 cut(s)	165, 981
BsaJI	CCNNGG	7 cut(s)	224, 657, 1276, 1979, 2074, 2248, 2698
BsaWI	WCCGGW	1 cut(s)	168
Bsc4I	CCNNNNNNNGG	4 cut(s)	155, 460, 461, 955
Bse118I	RCCGGY	1 cut(s)	528
Bse1I	ACTGG	8 cut(s)	384, 554, 727, 1075, 1757, 1878, 2398, 2497
Bse8I	GATNNNNATC	1 cut(s)	1960
BseBI	CCWGG	6 cut(s)	629, 1278, 1908, 1981, 2087, 2700
BseDI	CCNNGG	7 cut(s)	224, 657, 1276, 1979, 2074, 2248, 2698
BseGI	GGATG	7 cut(s)	403, 523, 895, 1392, 1732, 2545, 2644
BseJI	GATNNNNATC	1 cut(s)	1960
BseLI	CCNNNNNNNGG	4 cut(s)	155, 460, 461, 955
BseMII	CTCAG	6 cut(s)	222, 866, 1151, 1823, 2012, 2357
BseNI	ACTGG	8 cut(s)	384, 554, 727, 1075, 1757, 1878, 2398, 2497
BseRI	GAGGAG	6 cut(s)	893, 1580, 1853, 2171, 2468, 2747
BseX3I	CGGCCG	1 cut(s)	27
BseXI	GCAGC	6 cut(s)	199, 564, 636, 683, 2320, 2441
Bsh1236I	CGCG	2 cut(s)	1598, 2631
Bsh1285I	CGRYCG	1 cut(s)	30
BshFI	GGCC	7 cut(s)	29, 117, 293, 376, 546, 948, 2090
BsiEI	CGRYCG	1 cut(s)	30
BsiHKAI	GWGCWC	1 cut(s)	2572
BsiHKCI	CYCGRG	2 cut(s)	658, 675
BsiSI	CCGG	3 cut(s)	26, 169, 529
BslFI	GGGAC	4 cut(s)	287, 437, 675, 1739
BslI	CCNNNNNNNGG	4 cut(s)	155, 460, 461, 955
BsmAI	GTCTC	2 cut(s)	1486, 1601
BsmFI	GGGAC	4 cut(s)	287, 437, 675, 1739
BsmI	GAATGC	2 cut(s)	356, 1543
BsnI	GGCC	7 cut(s)	29, 117, 293, 376, 546, 948, 2090
BsoBI	CYCGRG	2 cut(s)	658, 675
Bsp1286I	GDGCHC	4 cut(s)	149, 1199, 1994, 2572
Bsp1407I	TGTACA	1 cut(s)	1389
Bsp143I	GATC	8 cut(s)	1762, 1955, 2066, 2203, 2356, 2459, 2515, 2710
Bsp68I	TCGCGA	1 cut(s)	1598
BspACI	CCGC	7 cut(s)	5, 373, 493, 795, 1949, 2631, 2657
BspANI	GGCC	7 cut(s)	29, 117, 293, 376, 546, 948, 2090
BspCNI	CTCAG	6 cut(s)	223, 865, 1152, 1824, 2011, 2356
BspFNI	CGCG	2 cut(s)	1598, 2631
BspHI	TCATGA	1 cut(s)	1174
BspLI	GGNNCC	4 cut(s)	189, 417, 909, 1274
BspMAI	CTGCAG	1 cut(s)	1114
BspMI	ACCTGC	1 cut(s)	2662
BspPI	GGATC	4 cut(s)	1950, 2074, 2198, 2364
BspTI	CTTAAG	1 cut(s)	538
BsrBI	CCGCTC	1 cut(s)	373
BsrFI	RCCGGY	1 cut(s)	528
BsrGI	TGTACA	1 cut(s)	1389
BsrI	ACTGG	8 cut(s)	384, 554, 727, 1075, 1757, 1878, 2398, 2497
BssAI	RCCGGY	1 cut(s)	528
BssECI	CCNNGG	7 cut(s)	224, 657, 1276, 1979, 2074, 2248, 2698
BssMI	GATC	8 cut(s)	1762, 1955, 2066, 2203, 2356, 2459, 2515, 2710
BssNI	GRCGYC	2 cut(s)	165, 981
BssT1I	CCWWGG	1 cut(s)	2074
Bst2UI	CCWGG	6 cut(s)	629, 1278, 1908, 1981, 2087, 2700
Bst4CI	ACNGT	4 cut(s)	158, 1136, 1171, 2392
Bst6I	CTCTTC	6 cut(s)	27, 309, 423, 432, 1923, 2133
BstACI	GRCGYC	2 cut(s)	165, 981
BstAFI	CTTAAG	1 cut(s)	538
BstAPI	GCANNNNNTGC	2 cut(s)	1013, 2438
BstAUI	TGTACA	1 cut(s)	1389
BstC8I	GCNNGC	3 cut(s)	210, 2166, 2255
BstDEI	CTNAG	8 cut(s)	231, 852, 1097, 1160, 1265, 1832, 1998, 2343
BstF5I	GGATG	7 cut(s)	403, 523, 895, 1392, 1732, 2545, 2644
BstFNI	CGCG	2 cut(s)	1598, 2631
BstHHI	GCGC	1 cut(s)	136
BstKTI	GATC	8 cut(s)	1765, 1958, 2069, 2206, 2359, 2462, 2518, 2713
BstMAI	GTCTC	2 cut(s)	1486, 1601
BstMBI	GATC	8 cut(s)	1762, 1955, 2066, 2203, 2356, 2459, 2515, 2710
BstMCI	CGRYCG	1 cut(s)	30
BstMWI	GCNNNNNNNGC	7 cut(s)	290, 1013, 1156, 1865, 1981, 2438, 2567
BstNI	CCWGG	6 cut(s)	629, 1278, 1908, 1981, 2087, 2700
BstNSI	RCATGY	2 cut(s)	713, 1403
BstSCI	CCNGG	6 cut(s)	627, 1276, 1906, 1979, 2085, 2698
BstSFI	CTRYAG	2 cut(s)	1110, 1578
BstUI	CGCG	2 cut(s)	1598, 2631
BstV1I	GCAGC	6 cut(s)	199, 564, 636, 683, 2320, 2441
BstV2I	GAAGAC	2 cut(s)	2074, 2649
BstX2I	RGATCY	1 cut(s)	1955
BstXI	CCANNNNNNTGG	3 cut(s)	1077, 1383, 2285
BstYI	RGATCY	1 cut(s)	1955
BstZI	CGGCCG	1 cut(s)	27
BsuI	GTATCC	1 cut(s)	1240
BsuRI	GGCC	7 cut(s)	29, 117, 293, 376, 546, 948, 2090
BtsCI	GGATG	7 cut(s)	403, 523, 895, 1392, 1732, 2545, 2644
BtsI	GCAGTG	3 cut(s)	113, 361, 1119
BtsIMutI	CAGTG	6 cut(s)	113, 361, 547, 720, 1082, 1119
BtuMI	TCGCGA	1 cut(s)	1598
BveI	ACCTGC	1 cut(s)	2662
Cac8I	GCNNGC	3 cut(s)	210, 2166, 2255
CciI	TCATGA	1 cut(s)	1174
CfoI	GCGC	1 cut(s)	136
Cfr10I	RCCGGY	1 cut(s)	528
Cfr13I	GGNCC	3 cut(s)	115, 362, 2089
CseI	GACGC	1 cut(s)	11
Csp6I	GTAC	4 cut(s)	175, 1125, 1390, 2469
CspCI	CAANNNNNGTGG	2 cut(s)	1870, 1905
CviQI	GTAC	4 cut(s)	175, 1125, 1390, 2469
DdeI	CTNAG	8 cut(s)	231, 852, 1097, 1160, 1265, 1832, 1998, 2343
DpnI	GATC	8 cut(s)	1764, 1957, 2068, 2205, 2358, 2461, 2517, 2712
DpnII	GATC	8 cut(s)	1762, 1955, 2066, 2203, 2356, 2459, 2515, 2710
DraI	TTTAAA	2 cut(s)	1257, 1711
DraIII	CACNNNGTG	1 cut(s)	587
DrdI	GACNNNNNNGTC	1 cut(s)	1820
DseDI	GACNNNNNNGTC	1 cut(s)	1820
EaeI	YGGCCR	2 cut(s)	27, 946
EagI	CGGCCG	1 cut(s)	27
Eam1104I	CTCTTC	6 cut(s)	27, 309, 423, 432, 1923, 2133
EarI	CTCTTC	6 cut(s)	27, 309, 423, 432, 1923, 2133
EciI	GGCGGA	1 cut(s)	20
EclXI	CGGCCG	1 cut(s)	27
Eco130I	CCWWGG	1 cut(s)	2074
Eco147I	AGGCCT	1 cut(s)	293
Eco24I	GRGCYC	3 cut(s)	149, 1199, 1994
Eco32I	GATATC	3 cut(s)	1339, 1720, 2416
Eco47I	GGWCC	1 cut(s)	362
Eco52I	CGGCCG	1 cut(s)	27
Eco57I	CTGAAG	4 cut(s)	80, 201, 1596, 2343
Eco88I	CYCGRG	2 cut(s)	658, 675
EcoRI	GAATTC	1 cut(s)	2036
EcoRII	CCWGG	6 cut(s)	627, 1276, 1906, 1979, 2085, 2698
EcoRV	GATATC	3 cut(s)	1339, 1720, 2416
EcoT14I	CCWWGG	1 cut(s)	2074
EcoT22I	ATGCAT	1 cut(s)	1563
EcoT38I	GRGCYC	3 cut(s)	149, 1199, 1994
ErhI	CCWWGG	1 cut(s)	2074
FalI	AAGNNNNNCTT	4 cut(s)	306, 338, 1920, 1952
FaqI	GGGAC	4 cut(s)	287, 437, 675, 1739
FauNDI	CATATG	1 cut(s)	2464
FbaI	TGATCA	1 cut(s)	1762
Fnu4HI	GCNGC	9 cut(s)	213, 374, 494, 578, 625, 672, 1949, 2334, 2430
FokI	GGATG	7 cut(s)	410, 530, 902, 1399, 1739, 2532, 2651
FriOI	GRGCYC	3 cut(s)	149, 1199, 1994
Fsp4HI	GCNGC	9 cut(s)	213, 374, 494, 578, 625, 672, 1949, 2334, 2430
FspBI	CTAG	6 cut(s)	131, 378, 1404, 1737, 2420, 2664
GlaI	GCGC	1 cut(s)	135
GluI	GCNGC	9 cut(s)	213, 374, 494, 578, 625, 672, 1949, 2334, 2430
GsuI	CTGGAG	1 cut(s)	744
HaeIII	GGCC	7 cut(s)	29, 117, 293, 376, 546, 948, 2090
HapII	CCGG	3 cut(s)	26, 169, 529
HgaI	GACGC	1 cut(s)	11
HhaI	GCGC	1 cut(s)	136
Hin1I	GRCGYC	2 cut(s)	165, 981
Hin6I	GCGC	1 cut(s)	134
HinP1I	GCGC	1 cut(s)	134
HindIII	AAGCTT	1 cut(s)	1094
HpaII	CCGG	3 cut(s)	26, 169, 529
HphI	GGTGA	4 cut(s)	1115, 1434, 2061, 2186
Hpy166II	GTNNAC	1 cut(s)	902
Hpy8I	GTNNAC	1 cut(s)	902
Hpy99I	CGWCG	6 cut(s)	43, 46, 76, 158, 167, 986
HpyAV	CCTTC	9 cut(s)	159, 238, 353, 397, 868, 1135, 1520, 2102, 2498
HpyCH4III	ACNGT	4 cut(s)	158, 1136, 1171, 2392
HpyCH4IV	ACGT	4 cut(s)	165, 865, 981, 1042
HpyF10VI	GCNNNNNNNGC	7 cut(s)	290, 1013, 1156, 1865, 1981, 2438, 2567
HpyF3I	CTNAG	8 cut(s)	231, 852, 1097, 1160, 1265, 1832, 1998, 2343
HpySE526I	ACGT	4 cut(s)	165, 865, 981, 1042
Hsp92I	GRCGYC	2 cut(s)	165, 981
HspAI	GCGC	1 cut(s)	134
Ksp22I	TGATCA	1 cut(s)	1762
Kzo9I	GATC	8 cut(s)	1762, 1955, 2066, 2203, 2356, 2459, 2515, 2710
LmnI	GCTCC	2 cut(s)	2567, 2734
Lsp1109I	GCAGC	6 cut(s)	199, 564, 636, 683, 2320, 2441
LweI	GCATC	5 cut(s)	646, 751, 839, 1465, 2151
MaeI	CTAG	6 cut(s)	131, 378, 1404, 1737, 2420, 2664
MaeII	ACGT	4 cut(s)	165, 865, 981, 1042
MaeIII	GTNAC	2 cut(s)	810, 1664
MalI	GATC	8 cut(s)	1764, 1957, 2068, 2205, 2358, 2461, 2517, 2712
MbiI	CCGCTC	1 cut(s)	373
MboI	GATC	8 cut(s)	1762, 1955, 2066, 2203, 2356, 2459, 2515, 2710
MfeI	CAATTG	2 cut(s)	605, 2562
MflI	RGATCY	1 cut(s)	1955
MhlI	GDGCHC	4 cut(s)	149, 1199, 1994, 2572
MlsI	TGGCCA	1 cut(s)	948
MluNI	TGGCCA	1 cut(s)	948
MlyI	GAGTC	5 cut(s)	44, 269, 1448, 1640, 1761
MmeI	TCCRAC	4 cut(s)	177, 1063, 1257, 2044
Mox20I	TGGCCA	1 cut(s)	948
Mph1103I	ATGCAT	1 cut(s)	1563
MroXI	GAANNNNTTC	2 cut(s)	1294, 1932
MscI	TGGCCA	1 cut(s)	948
MslI	CAYNNNNRTG	3 cut(s)	1075, 2233, 2283
Msp20I	TGGCCA	1 cut(s)	948
MspA1I	CMGCKG	1 cut(s)	795
MspCI	CTTAAG	1 cut(s)	538
MspI	CCGG	3 cut(s)	26, 169, 529
MspR9I	CCNGG	6 cut(s)	629, 1278, 1908, 1981, 2087, 2700
MssI	GTTTAAAC	1 cut(s)	1711
MunI	CAATTG	2 cut(s)	605, 2562
Mva1269I	GAATGC	2 cut(s)	356, 1543
MvaI	CCWGG	6 cut(s)	629, 1278, 1908, 1981, 2087, 2700
MvnI	CGCG	2 cut(s)	1598, 2631
MwoI	GCNNNNNNNGC	7 cut(s)	290, 1013, 1156, 1865, 1981, 2438, 2567
NdeI	CATATG	1 cut(s)	2464
NdeII	GATC	8 cut(s)	1762, 1955, 2066, 2203, 2356, 2459, 2515, 2710
NlaIV	GGNNCC	4 cut(s)	189, 417, 909, 1274
NmeAIII	GCCGAG	1 cut(s)	2229
NruI	TCGCGA	1 cut(s)	1598
NsiI	ATGCAT	1 cut(s)	1563
NspI	RCATGY	2 cut(s)	713, 1403
OliI	CACNNNNGTG	2 cut(s)	2233, 2283
PaeR7I	CTCGAG	1 cut(s)	675
PagI	TCATGA	1 cut(s)	1174
PceI	AGGCCT	1 cut(s)	293
PcsI	WCGNNNNNNNCGW	2 cut(s)	162, 2101
PctI	GAATGC	2 cut(s)	356, 1543
PdmI	GAANNNNTTC	2 cut(s)	1294, 1932
PfeI	GAWTC	6 cut(s)	8, 1415, 1682, 1694, 1847, 2660
PflFI	GACNNNGTC	1 cut(s)	1817
PflMI	CCANNNNNTGG	1 cut(s)	955
PfoI	TCCNGGA	1 cut(s)	1906
PkrI	GCNGC	9 cut(s)	214, 375, 495, 579, 626, 673, 1950, 2335, 2431
PleI	GAGTC	5 cut(s)	43, 269, 1448, 1640, 1760
PmeI	GTTTAAAC	1 cut(s)	1711
PpsI	GAGTC	5 cut(s)	43, 269, 1448, 1640, 1760
PshBI	ATTAAT	2 cut(s)	1221, 1556
Psp6I	CCWGG	6 cut(s)	627, 1276, 1906, 1979, 2085, 2698
PspGI	CCWGG	6 cut(s)	627, 1276, 1906, 1979, 2085, 2698
PspN4I	GGNNCC	4 cut(s)	189, 417, 909, 1274
PspPI	GGNCC	3 cut(s)	115, 362, 2089
PspXI	VCTCGAGB	1 cut(s)	675
PstI	CTGCAG	1 cut(s)	1114
PsuI	RGATCY	1 cut(s)	1955
PsyI	GACNNNGTC	1 cut(s)	1817
RruI	TCGCGA	1 cut(s)	1598
RsaI	GTAC	4 cut(s)	176, 1126, 1391, 2470
RsaNI	GTAC	4 cut(s)	175, 1125, 1390, 2469
RseI	CAYNNNNRTG	3 cut(s)	1075, 2233, 2283
SatI	GCNGC	9 cut(s)	213, 374, 494, 578, 625, 672, 1949, 2334, 2430
Sau3AI	GATC	8 cut(s)	1762, 1955, 2066, 2203, 2356, 2459, 2515, 2710
Sau96I	GGNCC	3 cut(s)	115, 362, 2089
SchI	GAGTC	5 cut(s)	44, 269, 1448, 1640, 1761
ScrFI	CCNGG	6 cut(s)	629, 1278, 1908, 1981, 2087, 2700
SduI	GDGCHC	4 cut(s)	149, 1199, 1994, 2572
SfaNI	GCATC	5 cut(s)	646, 751, 839, 1465, 2151
SfcI	CTRYAG	2 cut(s)	1110, 1578
Sfr274I	CTCGAG	1 cut(s)	675
SinI	GGWCC	1 cut(s)	362
SlaI	CTCGAG	1 cut(s)	675
SmiMI	CAYNNNNRTG	3 cut(s)	1075, 2233, 2283
SmlI	CTYRAG	2 cut(s)	538, 675
SmoI	CTYRAG	2 cut(s)	538, 675
SseBI	AGGCCT	1 cut(s)	293
SsiI	CCGC	7 cut(s)	5, 373, 493, 795, 1949, 2631, 2657
SspI	AATATT	1 cut(s)	2101
SspMI	CTAG	6 cut(s)	131, 378, 1404, 1737, 2420, 2664
StuI	AGGCCT	1 cut(s)	293
StyD4I	CCNGG	6 cut(s)	627, 1276, 1906, 1979, 2085, 2698
StyI	CCWWGG	1 cut(s)	2074
TaaI	ACNGT	4 cut(s)	158, 1136, 1171, 2392
TaiI	ACGT	4 cut(s)	168, 868, 984, 1045
TaqI	TCGA	5 cut(s)	74, 288, 676, 916, 1649
TatI	WGTACW	2 cut(s)	1124, 1389
TauI	GCSGC	3 cut(s)	376, 496, 1951
TfiI	GAWTC	6 cut(s)	8, 1415, 1682, 1694, 1847, 2660
TscAI	CASTG	6 cut(s)	113, 361, 554, 727, 1082, 1119
TseI	GCWGC	6 cut(s)	212, 577, 624, 671, 2333, 2429
TspGWI	ACGGA	2 cut(s)	2426, 2524
TspRI	CASTG	6 cut(s)	113, 361, 554, 727, 1082, 1119
Tth111I	GACNNNGTC	1 cut(s)	1817
Van91I	CCANNNNNTGG	1 cut(s)	955
Vha464I	CTTAAG	1 cut(s)	538
VpaK11BI	GGWCC	1 cut(s)	362
VspI	ATTAAT	2 cut(s)	1221, 1556
XapI	RAATTY	5 cut(s)	1259, 1357, 2036, 2315, 2674
XceI	RCATGY	2 cut(s)	713, 1403
XcmI	CCANNNNNNNNNTGG	1 cut(s)	391
XhoI	CTCGAG	1 cut(s)	675
XmnI	GAANNNNTTC	2 cut(s)	1294, 1932
XspI	CTAG	6 cut(s)	131, 378, 1404, 1737, 2420, 2664
ZraI	GACGTC	2 cut(s)	166, 982
Zsp2I	ATGCAT	1 cut(s)	1563

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.