Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002916

Physical Location & Seq

Genomic Coordinates Forward (+)

50232109 .. 50232991

Gene Structure 883 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0354200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGAATCCAAGGTTACAGATAGGCTCATACTTGGTGACGGTCTATGTCATGTTATCTACCATGCTGGTTATATGGTTTTCATTCTCATTAAAAGTCTGTTTATTACCAATAAAACAGAAGAAAAGAAAGTAGAGTTGTCATCGCCACCACCACTATCAATATCCGATATGGAAGCTGGATTGCCCTCATCAGAAACTGAGCTGACTTACATTATCACCCCGGTTCTAGCCTTCTGTAATGCCTATGGTTGCGGCATCACAGATTGGTCTCTTGCTTCCAACTACGGCAAAATCGCAATTCTCATCTTCAGTGCTTGGCTTGGCCGTGAAAAAGGTGGTGTCATTGCTGGCCTTGCTTCTTGTGGTGTAATGATAAGCATTGTCTCAACAGCCTCGGATCTCATGCAAGACTTCAAGACCGGATACCTAACTCTCTCTTCTCCTCGATCCATGTTCGTTAGCCAAGTTTTCCGGACAGCCATGGCTCCTTTGATATTCTGGTTCTTCTACAAAGCTTACCGAGTTGGTGATCCAACAGGCTCATATCCTGCACCCTATGGCCTAATGTACCGCGGCATTGCACTCCTCGGAGTTGAGGGCTTCGGCTCACTCCCCGAACACTGCGTCACGCTTGCAGTCTCATTTTTTGCATTTGCCATTGCCACTAACATAGTAACCGAGATTTTGAAGCGTTACGAGACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0004806 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005793 GO:0005794 GO:0005798 GO:0005801 GO:0005815 GO:0005829 GO:0005856 GO:0006810 GO:0006888 GO:0008150 GO:0012505 GO:0015630 GO:0016192 GO:0016298 GO:0016787 GO:0016788 GO:0030134 GO:0030135 GO:0031410 GO:0031982 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0052689 GO:0097708

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDHD

Protein Analysis

234

Amino Acids

25.57

Weight (kDa)

5.92

Isoelectric Point (pI)

36.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OPT	PF03169	59 - 225	3.7e-37	OPT oligopeptide transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002916)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31480
fragaria_vesca	FvH4_2g35070 FvH4_2g35070 FvH4_2g35070 FvH4_2g35070 FvH4_2g35070 FvH4_2g35070 FvH4_2g35070 FvH4_2g35070 FvH4_2g35070 FvH4_2g35070 FvH4_2g35070 FvH4_2g35070
malus_domestica	MD08G1108000.v1.1 MD15G1088500.v1.1
prunus_persica	Prupe.1G442600_v2.0.a1
pyrus_communis	pycom08g09000 pycom15g08300
rosa_chinensis	RchiOBHm_Chr5g0047771 RchiOBHm_Chr6g0306901
rosa_laevigata	RLG00000010756
rosa_multiflora	Rmu_sc0019304.1_g000001
rosa_roxburghii	Rroxscaffold_7G00161360
rosa_rugosa	Rorug01G0166300 Rorug01G0480900 Rorug01G0480900 Rorug01G0481000 Rorug01G0481100 Rorug06G0354100 Rorug06G0354100 Rorug06G0354100 Rorug06G0354200
rosa_samantha	Rh5AG270400 Rh6AG465800 Rh6BG435000 Rh6CG480400 Rh6DG467300
rosa_wichuraiana	Rw6G040610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	573
AccIII	TCCGGA	1 cut(s)	471
AciI	CCGC	3 cut(s)	252, 571, 573
AclWI	GGATC	3 cut(s)	405, 441, 524
AcoI	YGGCCR	1 cut(s)	322
AcuI	CTGAAG	1 cut(s)	292
AfaI	GTAC	1 cut(s)	569
AgsI	TTSAA	2 cut(s)	415, 688
AluBI	AGCT	3 cut(s)	176, 202, 515
AluI	AGCT	3 cut(s)	176, 202, 515
Alw26I	GTCTC	4 cut(s)	273, 388, 643, 692
AlwI	GGATC	3 cut(s)	405, 441, 524
AlwNI	CAGNNNCTG	1 cut(s)	197
Aor13HI	TCCGGA	1 cut(s)	471
AoxI	GGCC	3 cut(s)	322, 349, 559
ArsI	GACNNNNNNTTYG	2 cut(s)	609, 641
AsuC2I	CCSGG	1 cut(s)	221
AsuHPI	GGTGA	3 cut(s)	47, 208, 539
BceAI	ACGGC	2 cut(s)	301, 309
BciVI	GTATCC	1 cut(s)	416
BcnI	CCSGG	1 cut(s)	221
BcoDI	GTCTC	4 cut(s)	273, 388, 643, 692
BfaI	CTAG	2 cut(s)	227, 703
BfuI	GTATCC	1 cut(s)	416
BisI	GCNGC	2 cut(s)	253, 574
BlsI	GCNGC	2 cut(s)	254, 575
Bme1390I	CCNGG	1 cut(s)	221
BmiI	GGNNCC	1 cut(s)	486
BmrFI	CCNGG	1 cut(s)	221
BmsI	GCATC	1 cut(s)	264
BpuMI	CCSGG	1 cut(s)	221
BsaI	GGTCTC	2 cut(s)	273, 692
BsaJI	CCNNGG	6 cut(s)	9, 219, 393, 480, 571, 586
BsaWI	WCCGGW	2 cut(s)	419, 471
Bse3DI	GCAATG	3 cut(s)	342, 576, 657
BseAI	TCCGGA	1 cut(s)	471
BseDI	CCNNGG	6 cut(s)	9, 219, 393, 480, 571, 586
BseMI	GCAATG	3 cut(s)	342, 576, 657
BseMII	CTCAG	1 cut(s)	189
BseRI	GAGGAG	2 cut(s)	432, 575
BsgI	GTGCAG	1 cut(s)	534
Bsh1236I	CGCG	1 cut(s)	573
BshFI	GGCC	3 cut(s)	324, 351, 561
BsiSI	CCGG	3 cut(s)	221, 420, 472
BsmAI	GTCTC	4 cut(s)	273, 388, 643, 692
BsnI	GGCC	3 cut(s)	324, 351, 561
Bso31I	GGTCTC	2 cut(s)	273, 692
Bsp13I	TCCGGA	1 cut(s)	471
Bsp143I	GATC	3 cut(s)	397, 446, 529
Bsp19I	CCATGG	1 cut(s)	480
BspACI	CCGC	3 cut(s)	252, 571, 573
BspANI	GGCC	3 cut(s)	324, 351, 561
BspCNI	CTCAG	1 cut(s)	190
BspEI	TCCGGA	1 cut(s)	471
BspFNI	CGCG	1 cut(s)	573
BspLI	GGNNCC	1 cut(s)	486
BspPI	GGATC	3 cut(s)	405, 441, 524
BspTNI	GGTCTC	2 cut(s)	273, 692
BsrDI	GCAATG	3 cut(s)	342, 576, 657
BssECI	CCNNGG	6 cut(s)	9, 219, 393, 480, 571, 586
BssMI	GATC	3 cut(s)	397, 446, 529
BssT1I	CCWWGG	2 cut(s)	9, 480
Bst4CI	ACNGT	1 cut(s)	41
Bst6I	CTCTTC	1 cut(s)	442
BstC8I	GCNNGC	2 cut(s)	349, 633
BstDEI	CTNAG	1 cut(s)	198
BstDSI	CCRYGG	2 cut(s)	480, 571
BstFNI	CGCG	1 cut(s)	573
BstKTI	GATC	3 cut(s)	400, 449, 532
BstMAI	GTCTC	4 cut(s)	273, 388, 643, 692
BstMBI	GATC	3 cut(s)	397, 446, 529
BstMWI	GCNNNNNNNGC	1 cut(s)	353
BstSCI	CCNGG	1 cut(s)	219
BstUI	CGCG	1 cut(s)	573
BstX2I	RGATCY	1 cut(s)	397
BstYI	RGATCY	1 cut(s)	397
BsuI	GTATCC	1 cut(s)	416
BsuRI	GGCC	3 cut(s)	324, 351, 561
BtgI	CCRYGG	2 cut(s)	480, 571
BtgZI	GCGATG	1 cut(s)	126
BtsI	GCAGTG	1 cut(s)	619
BtsIMutI	CAGTG	2 cut(s)	316, 619
Cac8I	GCNNGC	2 cut(s)	349, 633
CaiI	CAGNNNCTG	1 cut(s)	197
Cfr42I	CCGCGG	1 cut(s)	574
CseI	GACGC	1 cut(s)	613
Csp6I	GTAC	1 cut(s)	568
CviAII	CATG	5 cut(s)	50, 62, 403, 451, 481
CviQI	GTAC	1 cut(s)	568
DdeI	CTNAG	1 cut(s)	198
DpnI	GATC	3 cut(s)	399, 448, 531
DpnII	GATC	3 cut(s)	397, 446, 529
EaeI	YGGCCR	1 cut(s)	322
Eam1104I	CTCTTC	1 cut(s)	442
EarI	CTCTTC	1 cut(s)	442
Eco130I	CCWWGG	2 cut(s)	9, 480
Eco31I	GGTCTC	2 cut(s)	273, 692
Eco57I	CTGAAG	1 cut(s)	292
EcoT14I	CCWWGG	2 cut(s)	9, 480
ErhI	CCWWGG	2 cut(s)	9, 480
FaeI	CATG	5 cut(s)	53, 65, 406, 454, 484
FatI	CATG	5 cut(s)	49, 61, 402, 450, 480
Fnu4HI	GCNGC	2 cut(s)	253, 574
Fsp4HI	GCNGC	2 cut(s)	253, 574
FspBI	CTAG	2 cut(s)	227, 703
GluI	GCNGC	2 cut(s)	253, 574
HaeIII	GGCC	3 cut(s)	324, 351, 561
HapII	CCGG	3 cut(s)	221, 420, 472
HgaI	GACGC	1 cut(s)	613
Hin1II	CATG	5 cut(s)	53, 65, 406, 454, 484
HindIII	AAGCTT	1 cut(s)	513
HinfI	GANTC	1 cut(s)	5
HpaII	CCGG	3 cut(s)	221, 420, 472
HphI	GGTGA	3 cut(s)	47, 208, 539
Hpy188I	TCNGA	4 cut(s)	166, 193, 397, 590
Hpy188III	TCNNGA	2 cut(s)	415, 472
HpyAV	CCTTC	1 cut(s)	241
HpyCH4III	ACNGT	1 cut(s)	41
HpyCH4V	TGCA	5 cut(s)	406, 551, 581, 635, 650
HpyF10VI	GCNNNNNNNGC	1 cut(s)	353
HpyF3I	CTNAG	1 cut(s)	198
Hsp92II	CATG	5 cut(s)	53, 65, 406, 454, 484
Kpn2I	TCCGGA	1 cut(s)	471
KspI	CCGCGG	1 cut(s)	574
Kzo9I	GATC	3 cut(s)	397, 446, 529
LmnI	GCTCC	1 cut(s)	490
LpnPI	CCDG	9 cut(s)	51, 162, 234, 333, 433, 484, 485, 522, 561
LweI	GCATC	1 cut(s)	264
MaeI	CTAG	2 cut(s)	227, 703
MaeIII	GTNAC	5 cut(s)	13, 35, 625, 673, 692
MalI	GATC	3 cut(s)	399, 448, 531
MboI	GATC	3 cut(s)	397, 446, 529
MboII	GAAGA	4 cut(s)	131, 298, 429, 496
MflI	RGATCY	1 cut(s)	397
MluCI	AATT	1 cut(s)	297
MmeI	TCCRAC	2 cut(s)	303, 557
MnlI	CCTC	5 cut(s)	196, 403, 453, 589, 596
MroI	TCCGGA	1 cut(s)	471
MseI	TTAA	1 cut(s)	90
MspA1I	CMGCKG	1 cut(s)	573
MspI	CCGG	3 cut(s)	221, 420, 472
MspR9I	CCNGG	1 cut(s)	221
MvnI	CGCG	1 cut(s)	573
MwoI	GCNNNNNNNGC	1 cut(s)	353
NciI	CCSGG	1 cut(s)	221
NcoI	CCATGG	1 cut(s)	480
NdeII	GATC	3 cut(s)	397, 446, 529
NlaIII	CATG	5 cut(s)	53, 65, 406, 454, 484
NlaIV	GGNNCC	1 cut(s)	486
NmuCI	GTSAC	2 cut(s)	35, 625
PfeI	GAWTC	1 cut(s)	5
PkrI	GCNGC	2 cut(s)	254, 575
PspN4I	GGNNCC	1 cut(s)	486
PstNI	CAGNNNCTG	1 cut(s)	197
PsuI	RGATCY	1 cut(s)	397
RsaI	GTAC	1 cut(s)	569
RsaNI	GTAC	1 cut(s)	568
SacII	CCGCGG	1 cut(s)	574
SaqAI	TTAA	1 cut(s)	90
SatI	GCNGC	2 cut(s)	253, 574
Sau3AI	GATC	3 cut(s)	397, 446, 529
ScrFI	CCNGG	1 cut(s)	221
SetI	ASST	7 cut(s)	15, 178, 204, 337, 429, 517, 704
SfaNI	GCATC	1 cut(s)	264
Sfr303I	CCGCGG	1 cut(s)	574
SgrBI	CCGCGG	1 cut(s)	574
Sse9I	AATT	1 cut(s)	297
SsiI	CCGC	3 cut(s)	252, 571, 573
SspMI	CTAG	2 cut(s)	227, 703
StyD4I	CCNGG	1 cut(s)	219
StyI	CCWWGG	2 cut(s)	9, 480
TaaI	ACNGT	1 cut(s)	41
TaqI	TCGA	1 cut(s)	445
TasI	AATT	1 cut(s)	297
TauI	GCSGC	2 cut(s)	255, 576
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	1 cut(s)	90
Tru9I	TTAA	1 cut(s)	90
TscAI	CASTG	2 cut(s)	316, 626
TseFI	GTSAC	2 cut(s)	35, 625
Tsp45I	GTSAC	2 cut(s)	35, 625
TspDTI	ATGAA	1 cut(s)	70
TspRI	CASTG	2 cut(s)	316, 626
XspI	CTAG	2 cut(s)	227, 703

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.