Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0002916

Physical Location & Seq

Genomic Coordinates Reverse (-)

4140957 .. 4149210

Gene Structure 8254 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010756

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2760 bp

ATGATTATGGCGGATTCCGGAGCACAGCGTCCGGCCGAAGAGTCGTCGTCATTCCCCGATTTGCTGAAGAACACGCCGTCGAACATTCGGAGATTGGAGGATGAGATTGAGCAGTGTAAGGGCCACCAGAAGTATCTAGCGCAGACTTTGAGCCCTTCCGACGGTGGCGACGTCCGGTGGTACTTTAACAAGGTCCCTCTAGGAGAGAATGAGCTGGCTGCTTCAGTTCCGAGGGCTGAGATAGTGGGGAAGGGGGAGTATTTTCGTTTCGGCATGAGGGACTCTCTGGCAATCGAGGCCTCATTTTTGCAGAGGGAGGAAGAGTTGCTTTCTTGTTGGTGGAGAGAGTATGCAGAATGTAGTGAAGGTCCGAAAGAGCGGCCTAGTTCCAGTAAGAAAGTGGATGAGAAGGCTCGTTCGGTTCCATTGTACGAAGAGGAAGAAGAGAGAGTTGGTGTCCCTGTTAAGGGAGGGCTTTATGAAGTAGATTTAGTGAAGCGGCATTGTTTCCCTGTTTATTGGGATGGAGAAAACCGGCGTGTCTTAAGAGGCCACTGGTTTGCTCGTAAAGGGGTTGATTGGCTGCCACTTCGAGAAGATGTTGCTGAACAATTGGAGATCGCATATCGCAGCCAGGTTTGGCATCGGAGAACTTTTCAGCCCTCTGGACTTTTTGCAGCTCGAGTTGATTTGCAAGGCTCTATCTATGGATTGCATGTGCTTTTCACCGGAGAAGATAATACTTGGGAGGCTTGGCTCAATGCAGATGCTTCTGGTTTTTCTAATGTCATTTCTTTCAGCGGAAATGGAATTAAGTTACGGCGTGGATATTCTGCATTTCACTCTCCAAAACCCACTCAGAATGAATTACGTCAGCAGAAGGAGGAGAAAATGGATGATTATTGTTCACAGGTTCCTGTTCGACATCTTGTGTTCATGGTTCATGGTATTGGTCAAAGATTGGAAAAATCCAATTTGGTTGATGACGTCGGTAATTTTCACCATATAACAGCCAGTCTTGCCGAAACACACCTTACTTCACTCCAACGTGATACTCAGAGGGTTCTTTTCATACCATGCCAGTGGAGAAAGGGTTTGAAGCTTAGTGGTGAAACTGCAGTGGAAAAATGTACTTTAGACGGTGTGAAGGGTTTGCGTGTCATGCTGAGTGCGACTGTTCATGATGTGTTATACTACATGAGCCCCATATATTGTCAGGACATCATTAACTCGGTATCCAACCAATTAAATCGGTTGTATTTAAAATTTCTTAGGAGGAACCCCGGTTATGATGGAAAGGTTTCCATATATGGTCATTCTTTGGGAAGTGTCCTGTCTTATGATATCCTTTGTCATCAAGAGAATTTGTCCTCCCCATTTCCAATGGATTGGATGTACAAAGAACATGCTAGAAATGAAGAATCTTCTCCTGATATGAACAACCAATCACCTACCGATGACTCTCTTACTAATTTGGGAGATGCAGTCTCTTTTGTATATAATCAAACTCATGACATGGGTTCAATTCTTGAAGGAAAATTGAATGCACAACCAACTCTATTAATGCATGAGGAGGGAAATGCTGTAGATGTGTGTGGTGTTGCGAGTTGTGAGACATCAGATTTGAATGAGTTTAATGCAAGGTCTATGGACTCGAAACAAACGCAGGGTAACAATTACGTGCACAAATCAGTTTGTGAAGCTAGCGACAAGTTTAAACAGGATATCTCAGATGAAACTACTAGAATGGAATGTGGAGTCCCAGTTGATCACATAGAGAAAGTGGTTCAAGAAGTATGTGAAGAAACGAGCAATAAAGACGAAGTAGTCAAATCGCTGAGGGAGGAGATTGATTCTCTAAAAGCCAAAATAGCAGAACTGGAAACCAAATTTGGTGGTAGAGATGGTTGTCCAGAAAATGAAGAGGTTCTTGCAACTACGCCACAAAGATCCATATCGGAGAAATTGCCTCCTAGGCAAGAGGGCTCAACTCAGAGTTATACCCCTTATATCAAATACACGAAACTTGAATTCAAGGTTGATACATTTTTTGCAGTTGGATCACCCCTTGGGGTCTTCCTGGCCCTTCGTAATATTCGTATTGGAATTGGCAAGGGGAAAGACTATTGGGAAGAGGAAAATATAAGTGAGGAGATGCCTGCTTGTCGGCAAATGTTCAACATATTTCACCCCTTTGATCCTGTTGCATATAGAATAGAGCCACTTGTGTGTAAAGAATACCTCGGCAAGCGACCTGTTATTGTACCCTACCACAAAGGTGGAAAGAGGTTACATATTGGATTTCAGGAATTTACTGAAGATTTAGCTGCTCGTTCTCAAGTAATAATGGATCATCTAAACTTCGTAAAAGTTAAAGTTCTGACAGTTTGCCAGTCAAGAAACACGGATATCCTAGAAGAAGCAGCAGAAAATGCCGAAGAACGAGAGGAGAGATCATATGGTACTCTTATGATGGAAAGGATAACTGGAAGTGAAGAAGGACGGATAGATCATGTGCTTCAAGACAAGACATTTGAACATCCGTATATTTCTGCAATTGGAGCACATACAAACTATTGGAGGGATTACGATACTGCCCTTTTCATAATGAAACACTTGTATCGCGGTATAGATGAAGACAACTTACCTGCGGAATCTAGTAGGAAAAATTCAAAAGATAAGATGGGTTTCCCTGGCTGGTCAGATCAAATAGGGACAGTAGATGAGGAGCTTCCTTTGACATTCTCTGAAAGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0004806 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005793 GO:0005794 GO:0005798 GO:0005801 GO:0005815 GO:0005829 GO:0005856 GO:0006810 GO:0006888 GO:0008150 GO:0012505 GO:0015630 GO:0016192 GO:0016298 GO:0016787 GO:0016788 GO:0030134 GO:0030135 GO:0031410 GO:0031982 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0052689 GO:0097708

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDHD

Protein Analysis

920

Amino Acids

104.79

Weight (kDa)

5.36

Isoelectric Point (pI)

55.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DDHD	PF02862	676 - 790	6.3e-32	DDHD domain
DDHD	PF02862	807 - 874	4e-13	DDHD domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002916)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31480
fragaria_vesca	FvH4_2g35070 FvH4_2g35070 FvH4_2g35070 FvH4_2g35070 FvH4_2g35070 FvH4_2g35070 FvH4_2g35070 FvH4_2g35070 FvH4_2g35070 FvH4_2g35070 FvH4_2g35070 FvH4_2g35070
malus_domestica	MD08G1108000.v1.1 MD15G1088500.v1.1
prunus_persica	Prupe.1G442600_v2.0.a1
pyrus_communis	pycom08g09000 pycom15g08300
rosa_chinensis	RchiOBHm_Chr5g0047771 RchiOBHm_Chr6g0306901
rosa_laevigata	RLG00000010756
rosa_multiflora	Rmu_sc0019304.1_g000001
rosa_roxburghii	Rroxscaffold_7G00161360
rosa_rugosa	Rorug01G0166300 Rorug01G0480900 Rorug01G0480900 Rorug01G0481000 Rorug01G0481100 Rorug06G0354100 Rorug06G0354100 Rorug06G0354100 Rorug06G0354200
rosa_samantha	Rh5AG270400 Rh6AG465800 Rh6BG435000 Rh6CG480400 Rh6DG467300
rosa_wichuraiana	Rw6G040610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1826
AatII	GACGTC	2 cut(s)	174, 990
Acc36I	ACCTGC	1 cut(s)	2656
AccBSI	CCGCTC	1 cut(s)	379
AccII	CGCG	1 cut(s)	2625
AccIII	TCCGGA	1 cut(s)	17
AciI	CCGC	6 cut(s)	11, 379, 499, 801, 2625, 2651
AclWI	GGATC	4 cut(s)	1944, 2068, 2192, 2358
AcoI	YGGCCR	1 cut(s)	33
AcsI	RAATTY	6 cut(s)	1265, 1363, 1889, 2030, 2309, 2668
AcuI	CTGAAG	3 cut(s)	86, 207, 2337
AcyI	GRCGYC	2 cut(s)	171, 987
AfaI	GTAC	6 cut(s)	182, 431, 1132, 1397, 2265, 2464
AfiI	CCNNNNNNNGG	3 cut(s)	161, 466, 467
AflII	CTTAAG	1 cut(s)	544
AjnI	CCWGG	3 cut(s)	633, 2079, 2692
AjuI	GAANNNNNNNTTGG	4 cut(s)	435, 467, 1875, 1907
AleI	CACNNNNGTG	2 cut(s)	2227, 2277
AluBI	AGCT	6 cut(s)	214, 680, 1102, 1703, 2327, 2731
AluI	AGCT	6 cut(s)	214, 680, 1102, 1703, 2327, 2731
Alw21I	GWGCWC	3 cut(s)	25, 1686, 2566
Alw26I	GTCTC	2 cut(s)	1492, 1607
Alw44I	GTGCAC	1 cut(s)	1682
AlwI	GGATC	4 cut(s)	1944, 2068, 2192, 2358
Ama87I	CYCGRG	1 cut(s)	681
Aor13HI	TCCGGA	1 cut(s)	17
AoxI	GGCC	6 cut(s)	33, 121, 297, 380, 550, 2082
ApaLI	GTGCAC	1 cut(s)	1682
ApeKI	GCWGC	6 cut(s)	218, 583, 630, 677, 2327, 2423
ApoI	RAATTY	6 cut(s)	1265, 1363, 1889, 2030, 2309, 2668
ArsI	GACNNNNNNTTYG	4 cut(s)	1606, 1638, 2516, 2548
AseI	ATTAAT	1 cut(s)	1562
Asp700I	GAANNNNTTC	2 cut(s)	1300, 1926
AspA2I	CCTAGG	1 cut(s)	1973
AspLEI	GCGC	1 cut(s)	142
AspS9I	GGNCC	4 cut(s)	121, 193, 368, 2083
AsuC2I	CCSGG	1 cut(s)	1284
AsuHPI	GGTGA	6 cut(s)	718, 992, 1121, 1440, 2055, 2180
AsuNHI	GCTAGC	1 cut(s)	1703
AvaI	CYCGRG	1 cut(s)	681
AvaII	GGWCC	2 cut(s)	193, 368
AvrII	CCTAGG	1 cut(s)	1973
BaeGI	GKGCMC	1 cut(s)	1686
BaeI	ACNNNNGTAYC	2 cut(s)	2603, 2636
BanII	GRGCYC	3 cut(s)	155, 1205, 1988
BarI	GAAGNNNNNNTAC	2 cut(s)	2628, 2660
BbsI	GAAGAC	2 cut(s)	2068, 2643
Bbv12I	GWGCWC	3 cut(s)	25, 1686, 2566
BbvCI	CCTCAGC	1 cut(s)	1838
BbvI	GCAGC	6 cut(s)	205, 570, 642, 689, 2314, 2435
BccI	CCATC	5 cut(s)	518, 1286, 1898, 2467, 2677
BceAI	ACGGC	2 cut(s)	61, 836
BciT130I	CCWGG	3 cut(s)	635, 2081, 2694
BciVI	GTATCC	1 cut(s)	1246
BclI	TGATCA	1 cut(s)	1768
BcnI	CCSGG	1 cut(s)	1284
BcoDI	GTCTC	2 cut(s)	1492, 1607
BfaI	CTAG	9 cut(s)	137, 200, 384, 1410, 1704, 1743, 1974, 2414, 2658
BfmI	CTRYAG	2 cut(s)	1116, 1584
BfrI	CTTAAG	1 cut(s)	544
BfuAI	ACCTGC	1 cut(s)	2656
BfuI	GTATCC	1 cut(s)	1246
BglI	GCCNNNNNGGC	1 cut(s)	1975
BisI	GCNGC	8 cut(s)	219, 380, 500, 584, 631, 678, 2328, 2424
BlnI	CCTAGG	1 cut(s)	1973
BlsI	GCNGC	8 cut(s)	220, 381, 501, 585, 632, 679, 2329, 2425
Bme1390I	CCNGG	4 cut(s)	635, 1284, 2081, 2694
Bme18I	GGWCC	2 cut(s)	193, 368
BmeT110I	CYCGRG	1 cut(s)	681
BmgT120I	GGNCC	4 cut(s)	121, 193, 368, 2083
BmiI	GGNNCC	4 cut(s)	195, 423, 915, 1280
BmrFI	CCNGG	4 cut(s)	635, 1284, 2081, 2694
BmrI	ACTGGG	1 cut(s)	1757
BmsI	GCATC	4 cut(s)	652, 757, 1471, 2145
BmtI	GCTAGC	1 cut(s)	1707
BmuI	ACTGGG	1 cut(s)	1757
BpiI	GAAGAC	2 cut(s)	2068, 2643
BplI	GAGNNNNNCTC	2 cut(s)	268, 300
Bpu10I	CCTNAGC	1 cut(s)	1838
BpuEI	CTTGAG	1 cut(s)	2322
BpuMI	CCSGG	1 cut(s)	1284
BsaAI	YACGTR	1 cut(s)	1681
BsaBI	GATNNNNATC	1 cut(s)	1954
BsaHI	GRCGYC	2 cut(s)	171, 987
BsaJI	CCNNGG	6 cut(s)	230, 1282, 1973, 2068, 2242, 2692
BsaWI	WCCGGW	3 cut(s)	17, 174, 728
BsaXI	ACNNNNNCTCC	8 cut(s)	308, 338, 1078, 1108, 1470, 1500, 1749, 1779
Bsc4I	CCNNNNNNNGG	3 cut(s)	161, 466, 467
Bse118I	RCCGGY	1 cut(s)	534
Bse1I	ACTGG	8 cut(s)	390, 560, 1014, 1081, 1763, 1884, 2392, 2491
Bse8I	GATNNNNATC	1 cut(s)	1954
BseAI	TCCGGA	1 cut(s)	17
BseBI	CCWGG	3 cut(s)	635, 2081, 2694
BseDI	CCNNGG	6 cut(s)	230, 1282, 1973, 2068, 2242, 2692
BseGI	GGATG	6 cut(s)	106, 409, 529, 901, 1398, 2539
BseJI	GATNNNNATC	1 cut(s)	1954
BseLI	CCNNNNNNNGG	3 cut(s)	161, 466, 467
BseMII	CTCAG	7 cut(s)	228, 872, 1070, 1157, 1743, 1829, 2006
BseNI	ACTGG	8 cut(s)	390, 560, 1014, 1081, 1763, 1884, 2392, 2491
BseRI	GAGGAG	6 cut(s)	899, 1586, 1859, 2165, 2462, 2741
BseSI	GKGCMC	1 cut(s)	1686
BseX3I	CGGCCG	1 cut(s)	33
BseXI	GCAGC	6 cut(s)	205, 570, 642, 689, 2314, 2435
Bsh1236I	CGCG	1 cut(s)	2625
Bsh1285I	CGRYCG	1 cut(s)	36
BshFI	GGCC	6 cut(s)	35, 123, 299, 382, 552, 2084
BsiEI	CGRYCG	1 cut(s)	36
BsiHKAI	GWGCWC	3 cut(s)	25, 1686, 2566
BsiHKCI	CYCGRG	1 cut(s)	681
BsiSI	CCGG	6 cut(s)	18, 32, 175, 535, 729, 1284
BslFI	GGGAC	5 cut(s)	179, 293, 443, 1745, 2728
BslI	CCNNNNNNNGG	3 cut(s)	161, 466, 467
BsmAI	GTCTC	2 cut(s)	1492, 1607
BsmFI	GGGAC	5 cut(s)	179, 293, 443, 1745, 2728
BsmI	GAATGC	1 cut(s)	1549
BsnI	GGCC	6 cut(s)	35, 123, 299, 382, 552, 2084
BsoBI	CYCGRG	1 cut(s)	681
Bsp1286I	GDGCHC	6 cut(s)	25, 155, 1205, 1686, 1988, 2566
Bsp13I	TCCGGA	1 cut(s)	17
Bsp1407I	TGTACA	1 cut(s)	1395
Bsp143I	GATC	9 cut(s)	618, 1768, 1949, 2060, 2197, 2350, 2453, 2509, 2704
BspACI	CCGC	6 cut(s)	11, 379, 499, 801, 2625, 2651
BspANI	GGCC	6 cut(s)	35, 123, 299, 382, 552, 2084
BspCNI	CTCAG	7 cut(s)	229, 871, 1069, 1158, 1742, 1830, 2005
BspEI	TCCGGA	1 cut(s)	17
BspFNI	CGCG	1 cut(s)	2625
BspHI	TCATGA	2 cut(s)	1180, 1510
BspLI	GGNNCC	4 cut(s)	195, 423, 915, 1280
BspMAI	CTGCAG	1 cut(s)	1120
BspMI	ACCTGC	1 cut(s)	2656
BspOI	GCTAGC	1 cut(s)	1707
BspPI	GGATC	4 cut(s)	1944, 2068, 2192, 2358
BspTI	CTTAAG	1 cut(s)	544
BsrBI	CCGCTC	1 cut(s)	379
BsrFI	RCCGGY	1 cut(s)	534
BsrGI	TGTACA	1 cut(s)	1395
BsrI	ACTGG	8 cut(s)	390, 560, 1014, 1081, 1763, 1884, 2392, 2491
BssAI	RCCGGY	1 cut(s)	534
BssECI	CCNNGG	6 cut(s)	230, 1282, 1973, 2068, 2242, 2692
BssMI	GATC	9 cut(s)	618, 1768, 1949, 2060, 2197, 2350, 2453, 2509, 2704
BssNI	GRCGYC	2 cut(s)	171, 987
BssT1I	CCWWGG	2 cut(s)	1973, 2068
Bst2UI	CCWGG	3 cut(s)	635, 2081, 2694
Bst4CI	ACNGT	5 cut(s)	164, 1142, 1177, 2386, 2719
Bst6I	CTCTTC	6 cut(s)	33, 315, 429, 438, 1917, 2127
BstACI	GRCGYC	2 cut(s)	171, 987
BstAFI	CTTAAG	1 cut(s)	544
BstAPI	GCANNNNNTGC	1 cut(s)	2432
BstAUI	TGTACA	1 cut(s)	1395
BstBAI	YACGTR	1 cut(s)	1681
BstC8I	GCNNGC	4 cut(s)	216, 1705, 2160, 2249
BstDEI	CTNAG	9 cut(s)	237, 858, 1056, 1103, 1166, 1271, 1729, 1838, 1992
BstF5I	GGATG	6 cut(s)	106, 409, 529, 901, 1398, 2539
BstFNI	CGCG	1 cut(s)	2625
BstHHI	GCGC	1 cut(s)	142
BstKTI	GATC	9 cut(s)	621, 1771, 1952, 2063, 2200, 2353, 2456, 2512, 2707
BstMAI	GTCTC	2 cut(s)	1492, 1607
BstMBI	GATC	9 cut(s)	618, 1768, 1949, 2060, 2197, 2350, 2453, 2509, 2704
BstMCI	CGRYCG	1 cut(s)	36
BstMWI	GCNNNNNNNGC	7 cut(s)	296, 1019, 1162, 1871, 1975, 2432, 2561
BstNI	CCWGG	3 cut(s)	635, 2081, 2694
BstNSI	RCATGY	2 cut(s)	719, 1409
BstSCI	CCNGG	4 cut(s)	633, 1282, 2079, 2692
BstSFI	CTRYAG	2 cut(s)	1116, 1584
BstSLI	GKGCMC	1 cut(s)	1686
BstUI	CGCG	1 cut(s)	2625
BstV1I	GCAGC	6 cut(s)	205, 570, 642, 689, 2314, 2435
BstV2I	GAAGAC	2 cut(s)	2068, 2643
BstX2I	RGATCY	1 cut(s)	1949
BstXI	CCANNNNNNTGG	3 cut(s)	1083, 1389, 2279
BstYI	RGATCY	1 cut(s)	1949
BstZI	CGGCCG	1 cut(s)	33
BsuI	GTATCC	1 cut(s)	1246
BsuRI	GGCC	6 cut(s)	35, 123, 299, 382, 552, 2084
BtsCI	GGATG	6 cut(s)	106, 409, 529, 901, 1398, 2539
BtsI	GCAGTG	2 cut(s)	119, 1125
BtsIMutI	CAGTG	4 cut(s)	119, 553, 1088, 1125
BveI	ACCTGC	1 cut(s)	2656
Cac8I	GCNNGC	4 cut(s)	216, 1705, 2160, 2249
CciI	TCATGA	2 cut(s)	1180, 1510
CfoI	GCGC	1 cut(s)	142
Cfr10I	RCCGGY	1 cut(s)	534
Cfr13I	GGNCC	4 cut(s)	121, 193, 368, 2083
CseI	GACGC	1 cut(s)	17
Csp6I	GTAC	6 cut(s)	181, 430, 1131, 1396, 2264, 2463
CspCI	CAANNNNNGTGG	2 cut(s)	1876, 1911
CviQI	GTAC	6 cut(s)	181, 430, 1131, 1396, 2264, 2463
DdeI	CTNAG	9 cut(s)	237, 858, 1056, 1103, 1166, 1271, 1729, 1838, 1992
DpnI	GATC	9 cut(s)	620, 1770, 1951, 2062, 2199, 2352, 2455, 2511, 2706
DpnII	GATC	9 cut(s)	618, 1768, 1949, 2060, 2197, 2350, 2453, 2509, 2704
DraI	TTTAAA	2 cut(s)	1263, 1717
DrdI	GACNNNNNNGTC	1 cut(s)	1826
DseDI	GACNNNNNNGTC	1 cut(s)	1826
EaeI	YGGCCR	1 cut(s)	33
EagI	CGGCCG	1 cut(s)	33
Eam1104I	CTCTTC	6 cut(s)	33, 315, 429, 438, 1917, 2127
EarI	CTCTTC	6 cut(s)	33, 315, 429, 438, 1917, 2127
EciI	GGCGGA	1 cut(s)	26
EclXI	CGGCCG	1 cut(s)	33
Eco130I	CCWWGG	2 cut(s)	1973, 2068
Eco147I	AGGCCT	1 cut(s)	299
Eco24I	GRGCYC	3 cut(s)	155, 1205, 1988
Eco32I	GATATC	3 cut(s)	1345, 1726, 2410
Eco47I	GGWCC	2 cut(s)	193, 368
Eco52I	CGGCCG	1 cut(s)	33
Eco57I	CTGAAG	3 cut(s)	86, 207, 2337
Eco88I	CYCGRG	1 cut(s)	681
EcoO109I	RGGNCCY	1 cut(s)	193
EcoRI	GAATTC	1 cut(s)	2030
EcoRII	CCWGG	3 cut(s)	633, 2079, 2692
EcoRV	GATATC	3 cut(s)	1345, 1726, 2410
EcoT14I	CCWWGG	2 cut(s)	1973, 2068
EcoT22I	ATGCAT	1 cut(s)	1569
EcoT38I	GRGCYC	3 cut(s)	155, 1205, 1988
ErhI	CCWWGG	2 cut(s)	1973, 2068
FalI	AAGNNNNNCTT	4 cut(s)	312, 344, 1914, 1946
FaqI	GGGAC	5 cut(s)	179, 293, 443, 1745, 2728
FauNDI	CATATG	1 cut(s)	2458
FbaI	TGATCA	1 cut(s)	1768
Fnu4HI	GCNGC	8 cut(s)	219, 380, 500, 584, 631, 678, 2328, 2424
FokI	GGATG	6 cut(s)	113, 416, 536, 908, 1405, 2526
FriOI	GRGCYC	3 cut(s)	155, 1205, 1988
Fsp4HI	GCNGC	8 cut(s)	219, 380, 500, 584, 631, 678, 2328, 2424
FspBI	CTAG	9 cut(s)	137, 200, 384, 1410, 1704, 1743, 1974, 2414, 2658
GlaI	GCGC	1 cut(s)	141
GluI	GCNGC	8 cut(s)	219, 380, 500, 584, 631, 678, 2328, 2424
HaeIII	GGCC	6 cut(s)	35, 123, 299, 382, 552, 2084
HapII	CCGG	6 cut(s)	18, 32, 175, 535, 729, 1284
HgaI	GACGC	1 cut(s)	17
HhaI	GCGC	1 cut(s)	142
Hin1I	GRCGYC	2 cut(s)	171, 987
Hin6I	GCGC	1 cut(s)	140
HinP1I	GCGC	1 cut(s)	140
HindIII	AAGCTT	1 cut(s)	1100
HinfI	GANTC	9 cut(s)	14, 41, 281, 1421, 1460, 1652, 1758, 1853, 2654
HpaII	CCGG	6 cut(s)	18, 32, 175, 535, 729, 1284
HphI	GGTGA	6 cut(s)	718, 992, 1121, 1440, 2055, 2180
Hpy166II	GTNNAC	2 cut(s)	908, 1684
Hpy8I	GTNNAC	2 cut(s)	908, 1684
Hpy99I	CGWCG	5 cut(s)	49, 82, 164, 173, 992
HpyAV	CCTTC	9 cut(s)	165, 244, 359, 403, 874, 1141, 1526, 2096, 2492
HpyCH4III	ACNGT	5 cut(s)	164, 1142, 1177, 2386, 2719
HpyCH4IV	ACGT	5 cut(s)	171, 871, 987, 1048, 1680
HpyF10VI	GCNNNNNNNGC	7 cut(s)	296, 1019, 1162, 1871, 1975, 2432, 2561
HpyF3I	CTNAG	9 cut(s)	237, 858, 1056, 1103, 1166, 1271, 1729, 1838, 1992
HpySE526I	ACGT	5 cut(s)	171, 871, 987, 1048, 1680
Hsp92I	GRCGYC	2 cut(s)	171, 987
HspAI	GCGC	1 cut(s)	140
Kpn2I	TCCGGA	1 cut(s)	17
Ksp22I	TGATCA	1 cut(s)	1768
Kzo9I	GATC	9 cut(s)	618, 1768, 1949, 2060, 2197, 2350, 2453, 2509, 2704
LmnI	GCTCC	3 cut(s)	20, 2561, 2728
Lsp1109I	GCAGC	6 cut(s)	205, 570, 642, 689, 2314, 2435
LweI	GCATC	4 cut(s)	652, 757, 1471, 2145
MaeI	CTAG	9 cut(s)	137, 200, 384, 1410, 1704, 1743, 1974, 2414, 2658
MaeII	ACGT	5 cut(s)	171, 871, 987, 1048, 1680
MaeIII	GTNAC	3 cut(s)	816, 1670, 2289
MalI	GATC	9 cut(s)	620, 1770, 1951, 2062, 2199, 2352, 2455, 2511, 2706
MbiI	CCGCTC	1 cut(s)	379
MboI	GATC	9 cut(s)	618, 1768, 1949, 2060, 2197, 2350, 2453, 2509, 2704
MfeI	CAATTG	2 cut(s)	611, 2556
MflI	RGATCY	1 cut(s)	1949
MhlI	GDGCHC	6 cut(s)	25, 155, 1205, 1686, 1988, 2566
MlyI	GAGTC	5 cut(s)	50, 275, 1454, 1646, 1767
MmeI	TCCRAC	4 cut(s)	183, 1069, 1263, 2038
Mph1103I	ATGCAT	1 cut(s)	1569
MroI	TCCGGA	1 cut(s)	17
MroXI	GAANNNNTTC	2 cut(s)	1300, 1926
MslI	CAYNNNNRTG	3 cut(s)	1081, 2227, 2277
MspA1I	CMGCKG	1 cut(s)	801
MspCI	CTTAAG	1 cut(s)	544
MspI	CCGG	6 cut(s)	18, 32, 175, 535, 729, 1284
MspR9I	CCNGG	4 cut(s)	635, 1284, 2081, 2694
MssI	GTTTAAAC	1 cut(s)	1717
MunI	CAATTG	2 cut(s)	611, 2556
Mva1269I	GAATGC	1 cut(s)	1549
MvaI	CCWGG	3 cut(s)	635, 2081, 2694
MvnI	CGCG	1 cut(s)	2625
MwoI	GCNNNNNNNGC	7 cut(s)	296, 1019, 1162, 1871, 1975, 2432, 2561
NciI	CCSGG	1 cut(s)	1284
NdeI	CATATG	1 cut(s)	2458
NdeII	GATC	9 cut(s)	618, 1768, 1949, 2060, 2197, 2350, 2453, 2509, 2704
NheI	GCTAGC	1 cut(s)	1703
NlaIV	GGNNCC	4 cut(s)	195, 423, 915, 1280
NmeAIII	GCCGAG	1 cut(s)	2223
NsiI	ATGCAT	1 cut(s)	1569
NspI	RCATGY	2 cut(s)	719, 1409
OliI	CACNNNNGTG	2 cut(s)	2227, 2277
PaeR7I	CTCGAG	1 cut(s)	681
PagI	TCATGA	2 cut(s)	1180, 1510
PceI	AGGCCT	1 cut(s)	299
PcsI	WCGNNNNNNNCGW	2 cut(s)	168, 2095
PctI	GAATGC	1 cut(s)	1549
PdmI	GAANNNNTTC	2 cut(s)	1300, 1926
PfeI	GAWTC	4 cut(s)	14, 1421, 1853, 2654
PkrI	GCNGC	8 cut(s)	220, 381, 501, 585, 632, 679, 2329, 2425
PleI	GAGTC	5 cut(s)	49, 275, 1454, 1646, 1766
PmeI	GTTTAAAC	1 cut(s)	1717
PpsI	GAGTC	5 cut(s)	49, 275, 1454, 1646, 1766
Ppu21I	YACGTR	1 cut(s)	1681
PpuMI	RGGWCCY	1 cut(s)	193
PshBI	ATTAAT	1 cut(s)	1562
Psp5II	RGGWCCY	1 cut(s)	193
Psp6I	CCWGG	3 cut(s)	633, 2079, 2692
PspGI	CCWGG	3 cut(s)	633, 2079, 2692
PspN4I	GGNNCC	4 cut(s)	195, 423, 915, 1280
PspPI	GGNCC	4 cut(s)	121, 193, 368, 2083
PspPPI	RGGWCCY	1 cut(s)	193
PspXI	VCTCGAGB	1 cut(s)	681
PstI	CTGCAG	1 cut(s)	1120
PsuI	RGATCY	1 cut(s)	1949
RsaI	GTAC	6 cut(s)	182, 431, 1132, 1397, 2265, 2464
RsaNI	GTAC	6 cut(s)	181, 430, 1131, 1396, 2264, 2463
RseI	CAYNNNNRTG	3 cut(s)	1081, 2227, 2277
SatI	GCNGC	8 cut(s)	219, 380, 500, 584, 631, 678, 2328, 2424
Sau3AI	GATC	9 cut(s)	618, 1768, 1949, 2060, 2197, 2350, 2453, 2509, 2704
Sau96I	GGNCC	4 cut(s)	121, 193, 368, 2083
SchI	GAGTC	5 cut(s)	50, 275, 1454, 1646, 1767
ScrFI	CCNGG	4 cut(s)	635, 1284, 2081, 2694
SduI	GDGCHC	6 cut(s)	25, 155, 1205, 1686, 1988, 2566
SfaNI	GCATC	4 cut(s)	652, 757, 1471, 2145
SfcI	CTRYAG	2 cut(s)	1116, 1584
Sfr274I	CTCGAG	1 cut(s)	681
SinI	GGWCC	2 cut(s)	193, 368
SlaI	CTCGAG	1 cut(s)	681
SmiMI	CAYNNNNRTG	3 cut(s)	1081, 2227, 2277
SmlI	CTYRAG	3 cut(s)	544, 681, 2337
SmoI	CTYRAG	3 cut(s)	544, 681, 2337
SseBI	AGGCCT	1 cut(s)	299
SsiI	CCGC	6 cut(s)	11, 379, 499, 801, 2625, 2651
SspI	AATATT	1 cut(s)	2095
SspMI	CTAG	9 cut(s)	137, 200, 384, 1410, 1704, 1743, 1974, 2414, 2658
StuI	AGGCCT	1 cut(s)	299
StyD4I	CCNGG	4 cut(s)	633, 1282, 2079, 2692
StyI	CCWWGG	2 cut(s)	1973, 2068
TaaI	ACNGT	5 cut(s)	164, 1142, 1177, 2386, 2719
TaiI	ACGT	5 cut(s)	174, 874, 990, 1051, 1683
TaqI	TCGA	6 cut(s)	80, 294, 592, 682, 922, 1655
TatI	WGTACW	2 cut(s)	1130, 1395
TauI	GCSGC	2 cut(s)	382, 502
TfiI	GAWTC	4 cut(s)	14, 1421, 1853, 2654
TscAI	CASTG	4 cut(s)	119, 560, 1088, 1125
TseI	GCWGC	6 cut(s)	218, 583, 630, 677, 2327, 2423
TspGWI	ACGGA	3 cut(s)	2420, 2518, 2532
TspRI	CASTG	4 cut(s)	119, 560, 1088, 1125
Vha464I	CTTAAG	1 cut(s)	544
VneI	GTGCAC	1 cut(s)	1682
VpaK11BI	GGWCC	2 cut(s)	193, 368
VspI	ATTAAT	1 cut(s)	1562
XapI	RAATTY	6 cut(s)	1265, 1363, 1889, 2030, 2309, 2668
XceI	RCATGY	2 cut(s)	719, 1409
XcmI	CCANNNNNNNNNTGG	1 cut(s)	397
XhoI	CTCGAG	1 cut(s)	681
XmaJI	CCTAGG	1 cut(s)	1973
XmnI	GAANNNNTTC	2 cut(s)	1300, 1926
XspI	CTAG	9 cut(s)	137, 200, 384, 1410, 1704, 1743, 1974, 2414, 2658
ZraI	GACGTC	2 cut(s)	172, 988
Zsp2I	ATGCAT	1 cut(s)	1569

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.