Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019304.1

Orthogroup ID

OG0002916

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1691

Gene Structure 1691 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019304.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

atggatgattattgttcacaggttcctgttcaacatcttgtgttcatggttcatggtattggtcaaagattggaaaaatccaatttggttgatgacgtcggtaatttccaccatataacagcaagtcttgccgaaacacaccttacttcactccaacgtgatagtcagagggttctttttataccatgccagtggagaaagggtttgaagcttagtggtgaaactgcagtggaaaaatgtactttagatggtgtgaagggtttgcgtgtcatgctgagtgcgactgttcatgatgtgttatactacatgagccccatatattgtcagggcatcattaactcg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0004806 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005793 GO:0005794 GO:0005798 GO:0005801 GO:0005815 GO:0005829 GO:0005856 GO:0006810 GO:0006888 GO:0008150 GO:0012505 GO:0015630 GO:0016192 GO:0016298 GO:0016787 GO:0016788 GO:0030134 GO:0030135 GO:0031410 GO:0031982 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0052689 GO:0097708

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDHD

Protein Analysis

114

Amino Acids

12.8

Weight (kDa)

6.57

Isoelectric Point (pI)

28.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002916)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31480
fragaria_vesca	FvH4_2g35070 FvH4_2g35070 FvH4_2g35070 FvH4_2g35070 FvH4_2g35070 FvH4_2g35070 FvH4_2g35070 FvH4_2g35070 FvH4_2g35070 FvH4_2g35070 FvH4_2g35070 FvH4_2g35070
malus_domestica	MD08G1108000.v1.1 MD15G1088500.v1.1
prunus_persica	Prupe.1G442600_v2.0.a1
pyrus_communis	pycom08g09000 pycom15g08300
rosa_chinensis	RchiOBHm_Chr5g0047771 RchiOBHm_Chr6g0306901
rosa_laevigata	RLG00000010756
rosa_multiflora	Rmu_sc0019304.1_g000001
rosa_roxburghii	Rroxscaffold_7G00161360
rosa_rugosa	Rorug01G0166300 Rorug01G0480900 Rorug01G0480900 Rorug01G0481000 Rorug01G0481100 Rorug06G0354100 Rorug06G0354100 Rorug06G0354100 Rorug06G0354200
rosa_samantha	Rh5AG270400 Rh6AG465800 Rh6BG435000 Rh6CG480400 Rh6DG467300
rosa_wichuraiana	Rw6G040610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	99
AcyI	GRCGYC	1 cut(s)	96
AfaI	GTAC	1 cut(s)	241
AgsI	TTSAA	2 cut(s)	32, 208
AluBI	AGCT	1 cut(s)	211
AluI	AGCT	1 cut(s)	211
AsuHPI	GGTGA	1 cut(s)	230
BanII	GRGCYC	1 cut(s)	314
BccI	CCATC	1 cut(s)	242
BfmI	CTRYAG	1 cut(s)	225
BmiI	GGNNCC	1 cut(s)	24
BsaHI	GRCGYC	1 cut(s)	96
BsaXI	ACNNNNNCTCC	2 cut(s)	187, 217
Bse1I	ACTGG	1 cut(s)	190
BseGI	GGATG	1 cut(s)	10
BseMII	CTCAG	1 cut(s)	266
BseNI	ACTGG	1 cut(s)	190
Bsp1286I	GDGCHC	1 cut(s)	314
BspCNI	CTCAG	1 cut(s)	267
BspHI	TCATGA	1 cut(s)	289
BspLI	GGNNCC	1 cut(s)	24
BspMAI	CTGCAG	1 cut(s)	229
BsrI	ACTGG	1 cut(s)	190
BssNI	GRCGYC	1 cut(s)	96
Bst4CI	ACNGT	1 cut(s)	286
BstACI	GRCGYC	1 cut(s)	96
BstAPI	GCANNNNNTGC	1 cut(s)	128
BstDEI	CTNAG	2 cut(s)	212, 275
BstF5I	GGATG	1 cut(s)	10
BstMWI	GCNNNNNNNGC	2 cut(s)	128, 271
BstSFI	CTRYAG	1 cut(s)	225
BstXI	CCANNNNNNTGG	1 cut(s)	192
BtsCI	GGATG	1 cut(s)	10
BtsI	GCAGTG	1 cut(s)	234
BtsIMutI	CAGTG	2 cut(s)	197, 234
CciI	TCATGA	1 cut(s)	289
Csp6I	GTAC	1 cut(s)	240
CviAII	CATG	6 cut(s)	46, 53, 186, 271, 290, 307
CviJI	RGCY	2 cut(s)	211, 312
CviKI_1	RGCY	2 cut(s)	211, 312
CviQI	GTAC	1 cut(s)	240
DdeI	CTNAG	2 cut(s)	212, 275
Eco24I	GRGCYC	1 cut(s)	314
EcoT38I	GRGCYC	1 cut(s)	314
FaeI	CATG	6 cut(s)	49, 56, 189, 274, 293, 310
FatI	CATG	6 cut(s)	45, 52, 185, 270, 289, 306
FokI	GGATG	1 cut(s)	17
FriOI	GRGCYC	1 cut(s)	314
Hin1I	GRCGYC	1 cut(s)	96
Hin1II	CATG	6 cut(s)	49, 56, 189, 274, 293, 310
HindIII	AAGCTT	1 cut(s)	209
HphI	GGTGA	1 cut(s)	230
Hpy166II	GTNNAC	1 cut(s)	17
Hpy188I	TCNGA	1 cut(s)	168
Hpy188III	TCNNGA	1 cut(s)	290
Hpy8I	GTNNAC	1 cut(s)	17
Hpy99I	CGWCG	1 cut(s)	101
HpyAV	CCTTC	1 cut(s)	250
HpyCH4III	ACNGT	1 cut(s)	286
HpyCH4IV	ACGT	2 cut(s)	96, 157
HpyCH4V	TGCA	1 cut(s)	227
HpyF10VI	GCNNNNNNNGC	2 cut(s)	128, 271
HpyF3I	CTNAG	2 cut(s)	212, 275
HpySE526I	ACGT	2 cut(s)	96, 157
Hsp92I	GRCGYC	1 cut(s)	96
Hsp92II	CATG	6 cut(s)	49, 56, 189, 274, 293, 310
LpnPI	CCDG	4 cut(s)	5, 39, 203, 311
MaeII	ACGT	2 cut(s)	96, 157
MhlI	GDGCHC	1 cut(s)	314
MluCI	AATT	2 cut(s)	82, 103
MmeI	TCCRAC	1 cut(s)	178
MnlI	CCTC	1 cut(s)	162
MseI	TTAA	1 cut(s)	336
MslI	CAYNNNNRTG	1 cut(s)	190
MwoI	GCNNNNNNNGC	2 cut(s)	128, 271
NlaIII	CATG	6 cut(s)	49, 56, 189, 274, 293, 310
NlaIV	GGNNCC	1 cut(s)	24
PagI	TCATGA	1 cut(s)	289
PspN4I	GGNNCC	1 cut(s)	24
PstI	CTGCAG	1 cut(s)	229
RsaI	GTAC	1 cut(s)	241
RsaNI	GTAC	1 cut(s)	240
RseI	CAYNNNNRTG	1 cut(s)	190
SaqAI	TTAA	1 cut(s)	336
SduI	GDGCHC	1 cut(s)	314
SetI	ASST	5 cut(s)	24, 99, 144, 160, 213
SfcI	CTRYAG	1 cut(s)	225
SmiMI	CAYNNNNRTG	1 cut(s)	190
Sse9I	AATT	2 cut(s)	82, 103
TaaI	ACNGT	1 cut(s)	286
TaiI	ACGT	2 cut(s)	99, 160
TasI	AATT	2 cut(s)	82, 103
TatI	WGTACW	1 cut(s)	239
Tru1I	TTAA	1 cut(s)	336
Tru9I	TTAA	1 cut(s)	336
TscAI	CASTG	2 cut(s)	197, 234
TspDTI	ATGAA	3 cut(s)	34, 41, 278
TspRI	CASTG	2 cut(s)	197, 234
ZraI	GACGTC	1 cut(s)	97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.