Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008902

Physical Location & Seq

Genomic Coordinates Forward (+)

53314408 .. 53315415

Gene Structure 1008 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32933

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGTCTCATGCATTAGCATCTCCACGTTCAAAAGATGCTGCAGTTGAGAGTCAGCAACCTACCGAGGCCTCCGGTGTTGGGAGGAGCTGGGTTAAGAGCATGTTCAGCAGGGATAATTCAACCAGATTAAACTCTTTCAGTATTGTTCGCAAATGGACTTCTGATGGTGGCTCTCCAACTACAAATGAAAATGGGACATCTCGTAAGCGAGAATTATCTGCAGCTGGACAGAAGAAAACCCAAACCAATGTTCGAGTACTTAGAGGCCATACTGGCCCTATCACTGCTCTACATTGTGTAACAAGGAGGGAAGTTTGGGATCTAGTGGGTGACCGTGAAGACGCAGGTTTCTTCATCAGTGGGAGCACAGACTGCACGGTTAAGATCTGGGATCCTAGTTTACCTGTTGATTATGACTTATGCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0002682 GO:0002683 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0007049 GO:0007275 GO:0008150 GO:0009791 GO:0009825 GO:0009888 GO:0009987 GO:0010235 GO:0010374 GO:0010440 GO:0016020 GO:0016049 GO:0022402 GO:0030135 GO:0030136 GO:0031347 GO:0031348 GO:0031410 GO:0031461 GO:0031982 GO:0032501 GO:0032502 GO:0032506 GO:0032991 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045824 GO:0048519 GO:0048583 GO:0048585 GO:0048856 GO:0048869 GO:0050776 GO:0050777 GO:0050789 GO:0051301 GO:0061640 GO:0065007 GO:0071944 GO:0080008 GO:0080134 GO:0090558 GO:0097708 GO:1902410 GO:1902494 GO:1903047 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DENN WD40 dDENN uDENN

Protein Analysis

142

Amino Acids

15.62

Weight (kDa)

8.91

Isoelectric Point (pI)

39.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008902)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0150541 RchiOBHm_Chr3g0491251 RchiOBHm_Chr5g0051891
rosa_multiflora	Rmu_co8305513.1_g000001 Rmu_sc0000147.1_g000063
rosa_roxburghii	Rroxscaffold_4G00294790 Rroxscaffold_5G00348390 Rroxscaffold_5G00366660 Rroxscaffold_6G00392110 Rroxscaffold_7G00199170
rosa_rugosa	Rorug04G0059000 Rorug04G0059100 Rorug04G0059100 Rorug04G0059200
rosa_samantha	Rh1AG138900 Rh1CG130900 Rh3AG297800 Rh3CG330800 Rh5AG452800 Rh5BG359300
rosa_wichuraiana	Rw2G039400 Rw3G026280 Rw6G005350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	335
AclWI	GGATC	3 cut(s)	327, 386, 399
AfaI	GTAC	1 cut(s)	258
AfiI	CCNNNNNNNGG	1 cut(s)	78
AgsI	TTSAA	2 cut(s)	30, 120
AjuI	GAANNNNNNNTTGG	2 cut(s)	234, 266
AluBI	AGCT	2 cut(s)	87, 224
AluI	AGCT	2 cut(s)	87, 224
Alw21I	GWGCWC	1 cut(s)	368
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	3 cut(s)	327, 386, 399
AoxI	GGCC	3 cut(s)	66, 265, 274
ApeKI	GCWGC	2 cut(s)	38, 221
AspS9I	GGNCC	1 cut(s)	275
AsuHPI	GGTGA	1 cut(s)	341
BamHI	GGATCC	1 cut(s)	391
BbsI	GAAGAC	1 cut(s)	345
Bbv12I	GWGCWC	1 cut(s)	368
BbvI	GCAGC	2 cut(s)	25, 233
BccI	CCATC	1 cut(s)	158
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	2 cut(s)	323, 396
BfmI	CTRYAG	2 cut(s)	39, 219
BfuAI	ACCTGC	1 cut(s)	335
BglI	GCCNNNNNGGC	1 cut(s)	273
BglII	AGATCT	1 cut(s)	384
BisI	GCNGC	2 cut(s)	39, 222
BlsI	GCNGC	2 cut(s)	40, 223
BmcAI	AGTACT	1 cut(s)	258
BmgT120I	GGNCC	1 cut(s)	275
BmiI	GGNNCC	1 cut(s)	393
BmsI	GCATC	2 cut(s)	25, 26
BpiI	GAAGAC	1 cut(s)	345
BsaJI	CCNNGG	1 cut(s)	63
BsaWI	WCCGGW	1 cut(s)	71
Bsc4I	CCNNNNNNNGG	1 cut(s)	78
Bse1I	ACTGG	1 cut(s)	277
BseDI	CCNNGG	1 cut(s)	63
BseLI	CCNNNNNNNGG	1 cut(s)	78
BseNI	ACTGG	1 cut(s)	277
BseRI	GAGGAG	1 cut(s)	97
BseXI	GCAGC	2 cut(s)	25, 233
BseYI	CCCAGC	1 cut(s)	87
BsgI	GTGCAG	1 cut(s)	358
BshFI	GGCC	3 cut(s)	68, 267, 276
BsiHKAI	GWGCWC	1 cut(s)	368
BsiSI	CCGG	1 cut(s)	72
BslFI	GGGAC	1 cut(s)	208
BslI	CCNNNNNNNGG	1 cut(s)	78
BsmAI	GTCTC	1 cut(s)	9
BsmFI	GGGAC	1 cut(s)	208
BsnI	GGCC	3 cut(s)	68, 267, 276
Bsp1286I	GDGCHC	1 cut(s)	368
Bsp143I	GATC	3 cut(s)	319, 384, 391
BspANI	GGCC	3 cut(s)	68, 267, 276
BspLI	GGNNCC	1 cut(s)	393
BspMAI	CTGCAG	2 cut(s)	43, 223
BspMI	ACCTGC	1 cut(s)	335
BspPI	GGATC	3 cut(s)	327, 386, 399
BsrI	ACTGG	1 cut(s)	277
BssECI	CCNNGG	1 cut(s)	63
BssMI	GATC	3 cut(s)	319, 384, 391
Bst4CI	ACNGT	2 cut(s)	335, 379
BstAPI	GCANNNNNTGC	1 cut(s)	372
BstDEI	CTNAG	1 cut(s)	260
BstEII	GGTNACC	1 cut(s)	329
BstKTI	GATC	3 cut(s)	322, 387, 394
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	3 cut(s)	319, 384, 391
BstMWI	GCNNNNNNNGC	3 cut(s)	105, 273, 372
BstNSI	RCATGY	1 cut(s)	103
BstPI	GGTNACC	1 cut(s)	329
BstSFI	CTRYAG	2 cut(s)	39, 219
BstV1I	GCAGC	2 cut(s)	25, 233
BstV2I	GAAGAC	1 cut(s)	345
BstX2I	RGATCY	3 cut(s)	319, 384, 391
BstYI	RGATCY	3 cut(s)	319, 384, 391
BsuRI	GGCC	3 cut(s)	68, 267, 276
BtsI	GCAGTG	1 cut(s)	282
BtsIMutI	CAGTG	2 cut(s)	282, 364
BveI	ACCTGC	1 cut(s)	335
Cfr13I	GGNCC	1 cut(s)	275
CseI	GACGC	1 cut(s)	350
Csp6I	GTAC	1 cut(s)	257
CviAII	CATG	2 cut(s)	8, 100
CviJI	RGCY	6 cut(s)	68, 87, 171, 224, 267, 276
CviKI_1	RGCY	6 cut(s)	68, 87, 171, 224, 267, 276
CviQI	GTAC	1 cut(s)	257
DdeI	CTNAG	1 cut(s)	260
DpnI	GATC	3 cut(s)	321, 386, 393
DpnII	GATC	3 cut(s)	319, 384, 391
Eco147I	AGGCCT	1 cut(s)	68
Eco91I	GGTNACC	1 cut(s)	329
EcoO65I	GGTNACC	1 cut(s)	329
EcoT22I	ATGCAT	1 cut(s)	13
FaeI	CATG	2 cut(s)	11, 103
FaiI	YATR	5 cut(s)	9, 101, 270, 414, 421
FaqI	GGGAC	1 cut(s)	208
FatI	CATG	2 cut(s)	7, 99
Fnu4HI	GCNGC	2 cut(s)	39, 222
Fsp4HI	GCNGC	2 cut(s)	39, 222
FspBI	CTAG	2 cut(s)	323, 396
GluI	GCNGC	2 cut(s)	39, 222
GsaI	CCCAGC	1 cut(s)	91
HaeIII	GGCC	3 cut(s)	68, 267, 276
HapII	CCGG	1 cut(s)	72
HgaI	GACGC	1 cut(s)	350
Hin1II	CATG	2 cut(s)	11, 103
HinfI	GANTC	1 cut(s)	49
HpaII	CCGG	1 cut(s)	72
HphI	GGTGA	1 cut(s)	341
Hpy166II	GTNNAC	1 cut(s)	401
Hpy188I	TCNGA	1 cut(s)	163
Hpy8I	GTNNAC	1 cut(s)	401
HpyCH4III	ACNGT	2 cut(s)	335, 379
HpyCH4IV	ACGT	1 cut(s)	25
HpyCH4V	TGCA	4 cut(s)	11, 41, 221, 375
HpyF10VI	GCNNNNNNNGC	3 cut(s)	105, 273, 372
HpyF3I	CTNAG	1 cut(s)	260
HpySE526I	ACGT	1 cut(s)	25
Hsp92II	CATG	2 cut(s)	11, 103
Kzo9I	GATC	3 cut(s)	319, 384, 391
LmnI	GCTCC	2 cut(s)	84, 363
LpnPI	CCDG	9 cut(s)	73, 85, 94, 136, 210, 258, 330, 373, 417
Lsp1109I	GCAGC	2 cut(s)	25, 233
LweI	GCATC	2 cut(s)	25, 26
MaeI	CTAG	2 cut(s)	323, 396
MaeII	ACGT	1 cut(s)	25
MaeIII	GTNAC	2 cut(s)	298, 329
MalI	GATC	3 cut(s)	321, 386, 393
MboI	GATC	3 cut(s)	319, 384, 391
MboII	GAAGA	3 cut(s)	244, 343, 350
MflI	RGATCY	3 cut(s)	319, 384, 391
MhlI	GDGCHC	1 cut(s)	368
MluCI	AATT	2 cut(s)	115, 212
MlyI	GAGTC	1 cut(s)	58
MmeI	TCCRAC	1 cut(s)	200
MnlI	CCTC	5 cut(s)	58, 75, 79, 257, 300
Mph1103I	ATGCAT	1 cut(s)	13
MseI	TTAA	3 cut(s)	93, 128, 381
MspA1I	CMGCKG	1 cut(s)	224
MspI	CCGG	1 cut(s)	72
MwoI	GCNNNNNNNGC	3 cut(s)	105, 273, 372
NdeII	GATC	3 cut(s)	319, 384, 391
NlaIII	CATG	2 cut(s)	11, 103
NlaIV	GGNNCC	1 cut(s)	393
NmuCI	GTSAC	1 cut(s)	329
NsiI	ATGCAT	1 cut(s)	13
NspI	RCATGY	1 cut(s)	103
PceI	AGGCCT	1 cut(s)	68
PkrI	GCNGC	2 cut(s)	40, 223
PleI	GAGTC	1 cut(s)	57
PpsI	GAGTC	1 cut(s)	57
PspEI	GGTNACC	1 cut(s)	329
PspFI	CCCAGC	1 cut(s)	87
PspN4I	GGNNCC	1 cut(s)	393
PspPI	GGNCC	1 cut(s)	275
PstI	CTGCAG	2 cut(s)	43, 223
PsuI	RGATCY	3 cut(s)	319, 384, 391
PvuII	CAGCTG	1 cut(s)	224
RsaI	GTAC	1 cut(s)	258
RsaNI	GTAC	1 cut(s)	257
SaqAI	TTAA	3 cut(s)	93, 128, 381
SatI	GCNGC	2 cut(s)	39, 222
Sau3AI	GATC	3 cut(s)	319, 384, 391
Sau96I	GGNCC	1 cut(s)	275
ScaI	AGTACT	1 cut(s)	258
SchI	GAGTC	1 cut(s)	58
SduI	GDGCHC	1 cut(s)	368
SetI	ASST	6 cut(s)	28, 61, 89, 226, 349, 406
SfaNI	GCATC	2 cut(s)	25, 26
SfcI	CTRYAG	2 cut(s)	39, 219
SfiI	GGCCNNNNNGGCC	1 cut(s)	273
Sse9I	AATT	2 cut(s)	115, 212
SseBI	AGGCCT	1 cut(s)	68
SspMI	CTAG	2 cut(s)	323, 396
StuI	AGGCCT	1 cut(s)	68
TaaI	ACNGT	2 cut(s)	335, 379
TaiI	ACGT	1 cut(s)	28
TaqI	TCGA	1 cut(s)	253
TasI	AATT	2 cut(s)	115, 212
TatI	WGTACW	1 cut(s)	256
Tru1I	TTAA	3 cut(s)	93, 128, 381
Tru9I	TTAA	3 cut(s)	93, 128, 381
TscAI	CASTG	2 cut(s)	289, 364
TseFI	GTSAC	1 cut(s)	329
TseI	GCWGC	2 cut(s)	38, 221
Tsp45I	GTSAC	1 cut(s)	329
TspDTI	ATGAA	2 cut(s)	201, 343
TspRI	CASTG	2 cut(s)	289, 364
XceI	RCATGY	1 cut(s)	103
XspI	CTAG	2 cut(s)	323, 396
ZrmI	AGTACT	1 cut(s)	258
Zsp2I	ATGCAT	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.