Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0008902

Physical Location & Seq

Genomic Coordinates Reverse (-)

36367921 .. 36369766

Gene Structure 1846 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG297800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGTCTTGTCTCAGTTGCTGCGTCTCTTTTTCCATGACTGCTTCATTGAGGTCGGCCAACTATGCCTCTTTGGTGACTGATCAATCTTTGGTGGAATTACACATGGCTGGACTAGGACTTCCTGATCTTGATGCATGGTACATGATTGAAACAATAGCTGAGAAGAACAACATTGGATACACACAATTTATAAAGCTGAGGGGGTTATTGTCGCATGTTCAACAACTACGAATTGGTTACTGGGGAATCAGTTCTTTCAAGGCCCAATCCATGTCTCATGGATTAGCATCTCCACGTTCAAAAGATGCTGCAGTTGAGAGTCAGCAACCTGCCGAGGCCTCCGGTGTTGGGAGGAGCTGGGTTCAGAGCATGTTCAGTAGGGATAATTCAACCAGATTAAACTCTTTCAGTCGTGTTCGCAAATGGACTTCTGATGGTGGCTCTCCAGCTACAAATGAAAATGGGACATCTCGTAAGAGAGAATTATCTGCAGCTGGACAGAAGAAAACCCAAACCAATGTTCTAGTACTTAGAGGCCATACTGGCCCTATCACTGCTCTACATTGTGTAACAAGGAGGGAAGTTTGGGATCTAGTGGGTGACCGTGAAGACGCAGGTTTCTTCATCAGTGGGAGCACAGACTGCACAGTTAAGATCTGGGATCCTAGTTTACCCGTTGATTATGACTTATGCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0002682 GO:0002683 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0007049 GO:0007275 GO:0008150 GO:0009791 GO:0009825 GO:0009888 GO:0009987 GO:0010235 GO:0010374 GO:0010440 GO:0016020 GO:0016049 GO:0022402 GO:0030135 GO:0030136 GO:0031347 GO:0031348 GO:0031410 GO:0031461 GO:0031982 GO:0032501 GO:0032502 GO:0032506 GO:0032991 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045824 GO:0048519 GO:0048583 GO:0048585 GO:0048856 GO:0048869 GO:0050776 GO:0050777 GO:0050789 GO:0051301 GO:0061640 GO:0065007 GO:0071944 GO:0080008 GO:0080134 GO:0090558 GO:0097708 GO:1902410 GO:1902494 GO:1903047 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DENN WD40 dDENN uDENN

Protein Analysis

232

Amino Acids

25.51

Weight (kDa)

8.21

Isoelectric Point (pI)

48.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008902)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0150541 RchiOBHm_Chr3g0491251 RchiOBHm_Chr5g0051891
rosa_multiflora	Rmu_co8305513.1_g000001 Rmu_sc0000147.1_g000063
rosa_roxburghii	Rroxscaffold_4G00294790 Rroxscaffold_5G00348390 Rroxscaffold_5G00366660 Rroxscaffold_6G00392110 Rroxscaffold_7G00199170
rosa_rugosa	Rorug04G0059000 Rorug04G0059100 Rorug04G0059100 Rorug04G0059200
rosa_samantha	Rh1AG138900 Rh1CG130900 Rh3AG297800 Rh3CG330800 Rh5AG452800 Rh5BG359300
rosa_wichuraiana	Rw2G039400 Rw3G026280 Rw6G005350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	191
Acc36I	ACCTGC	2 cut(s)	337, 605
AclWI	GGATC	3 cut(s)	597, 656, 669
AcoI	YGGCCR	1 cut(s)	54
AfaI	GTAC	2 cut(s)	140, 528
AfiI	CCNNNNNNNGG	1 cut(s)	348
AgsI	TTSAA	5 cut(s)	149, 221, 259, 300, 390
AjuI	GAANNNNNNNTTGG	2 cut(s)	504, 536
AluBI	AGCT	5 cut(s)	158, 196, 357, 449, 494
AluI	AGCT	5 cut(s)	158, 196, 357, 449, 494
Alw21I	GWGCWC	1 cut(s)	638
Alw26I	GTCTC	3 cut(s)	14, 28, 279
AlwI	GGATC	3 cut(s)	597, 656, 669
AlwNI	CAGNNNCTG	1 cut(s)	18
AoxI	GGCC	5 cut(s)	54, 261, 336, 535, 544
ApeKI	GCWGC	3 cut(s)	18, 308, 491
Asp700I	GAANNNNTTC	1 cut(s)	250
AspS9I	GGNCC	2 cut(s)	262, 545
AsuHPI	GGTGA	2 cut(s)	85, 611
BamHI	GGATCC	1 cut(s)	661
BbsI	GAAGAC	1 cut(s)	615
Bbv12I	GWGCWC	1 cut(s)	638
BbvCI	CCTCAGC	1 cut(s)	197
BbvI	GCAGC	3 cut(s)	5, 295, 503
BccI	CCATC	1 cut(s)	428
BciVI	GTATCC	1 cut(s)	170
BclI	TGATCA	1 cut(s)	79
BcoDI	GTCTC	3 cut(s)	14, 28, 279
BfaI	CTAG	4 cut(s)	113, 524, 593, 666
BfmI	CTRYAG	2 cut(s)	309, 489
BfuAI	ACCTGC	2 cut(s)	337, 605
BfuI	GTATCC	1 cut(s)	170
BglI	GCCNNNNNGGC	1 cut(s)	543
BglII	AGATCT	1 cut(s)	654
BisI	GCNGC	3 cut(s)	19, 309, 492
BlsI	GCNGC	3 cut(s)	20, 310, 493
BmcAI	AGTACT	1 cut(s)	528
BmgT120I	GGNCC	2 cut(s)	262, 545
BmiI	GGNNCC	1 cut(s)	663
BmrI	ACTGGG	1 cut(s)	250
BmsI	GCATC	3 cut(s)	121, 295, 296
BmuI	ACTGGG	1 cut(s)	250
BpiI	GAAGAC	1 cut(s)	615
BpmI	CTGGAG	1 cut(s)	429
Bpu10I	CCTNAGC	1 cut(s)	197
BsaBI	GATNNNNATC	1 cut(s)	286
BsaJI	CCNNGG	1 cut(s)	333
BsaWI	WCCGGW	1 cut(s)	341
Bsc4I	CCNNNNNNNGG	1 cut(s)	348
Bse1I	ACTGG	2 cut(s)	245, 547
Bse8I	GATNNNNATC	1 cut(s)	286
BseDI	CCNNGG	1 cut(s)	333
BseJI	GATNNNNATC	1 cut(s)	286
BseLI	CCNNNNNNNGG	1 cut(s)	348
BseMII	CTCAG	3 cut(s)	25, 150, 188
BseNI	ACTGG	2 cut(s)	245, 547
BseRI	GAGGAG	1 cut(s)	367
BseXI	GCAGC	3 cut(s)	5, 295, 503
BseYI	CCCAGC	1 cut(s)	357
BsgI	GTGCAG	1 cut(s)	628
BshFI	GGCC	5 cut(s)	56, 263, 338, 537, 546
BsiHKAI	GWGCWC	1 cut(s)	638
BsiSI	CCGG	1 cut(s)	342
BslFI	GGGAC	1 cut(s)	478
BslI	CCNNNNNNNGG	1 cut(s)	348
BsmAI	GTCTC	3 cut(s)	14, 28, 279
BsmBI	CGTCTC	1 cut(s)	28
BsmFI	GGGAC	1 cut(s)	478
BsnI	GGCC	5 cut(s)	56, 263, 338, 537, 546
Bsp1286I	GDGCHC	1 cut(s)	638
Bsp143I	GATC	5 cut(s)	79, 124, 589, 654, 661
BspANI	GGCC	5 cut(s)	56, 263, 338, 537, 546
BspCNI	CTCAG	3 cut(s)	24, 151, 189
BspLI	GGNNCC	1 cut(s)	663
BspMAI	CTGCAG	2 cut(s)	313, 493
BspMI	ACCTGC	2 cut(s)	337, 605
BspPI	GGATC	3 cut(s)	597, 656, 669
BsrI	ACTGG	2 cut(s)	245, 547
BssECI	CCNNGG	1 cut(s)	333
BssMI	GATC	5 cut(s)	79, 124, 589, 654, 661
Bst4CI	ACNGT	2 cut(s)	605, 649
BstAPI	GCANNNNNTGC	1 cut(s)	642
BstDEI	CTNAG	4 cut(s)	11, 159, 197, 530
BstEII	GGTNACC	1 cut(s)	599
BstKTI	GATC	5 cut(s)	82, 127, 592, 657, 664
BstMAI	GTCTC	3 cut(s)	14, 28, 279
BstMBI	GATC	5 cut(s)	79, 124, 589, 654, 661
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 543, 642
BstNSI	RCATGY	2 cut(s)	218, 373
BstPI	GGTNACC	1 cut(s)	599
BstSFI	CTRYAG	2 cut(s)	309, 489
BstV1I	GCAGC	3 cut(s)	5, 295, 503
BstV2I	GAAGAC	1 cut(s)	615
BstX2I	RGATCY	3 cut(s)	589, 654, 661
BstYI	RGATCY	3 cut(s)	589, 654, 661
BsuI	GTATCC	1 cut(s)	170
BsuRI	GGCC	5 cut(s)	56, 263, 338, 537, 546
BtsI	GCAGTG	1 cut(s)	552
BtsIMutI	CAGTG	2 cut(s)	552, 634
BveI	ACCTGC	2 cut(s)	337, 605
CaiI	CAGNNNCTG	1 cut(s)	18
Cfr13I	GGNCC	2 cut(s)	262, 545
CseI	GACGC	2 cut(s)	10, 620
Csp6I	GTAC	2 cut(s)	139, 527
CviAII	CATG	8 cut(s)	34, 103, 135, 142, 215, 271, 278, 370
CviQI	GTAC	2 cut(s)	139, 527
DdeI	CTNAG	4 cut(s)	11, 159, 197, 530
DpnI	GATC	5 cut(s)	81, 126, 591, 656, 663
DpnII	GATC	5 cut(s)	79, 124, 589, 654, 661
EaeI	YGGCCR	1 cut(s)	54
Eco147I	AGGCCT	1 cut(s)	338
Eco91I	GGTNACC	1 cut(s)	599
EcoO65I	GGTNACC	1 cut(s)	599
EcoT22I	ATGCAT	1 cut(s)	136
Esp3I	CGTCTC	1 cut(s)	28
FaeI	CATG	8 cut(s)	37, 106, 138, 145, 218, 274, 281, 373
FaqI	GGGAC	1 cut(s)	478
FatI	CATG	8 cut(s)	33, 102, 134, 141, 214, 270, 277, 369
FbaI	TGATCA	1 cut(s)	79
Fnu4HI	GCNGC	3 cut(s)	19, 309, 492
Fsp4HI	GCNGC	3 cut(s)	19, 309, 492
FspBI	CTAG	4 cut(s)	113, 524, 593, 666
GluI	GCNGC	3 cut(s)	19, 309, 492
GsaI	CCCAGC	1 cut(s)	361
GsuI	CTGGAG	1 cut(s)	429
HaeIII	GGCC	5 cut(s)	56, 263, 338, 537, 546
HapII	CCGG	1 cut(s)	342
HgaI	GACGC	2 cut(s)	10, 620
Hin1II	CATG	8 cut(s)	37, 106, 138, 145, 218, 274, 281, 373
HinfI	GANTC	2 cut(s)	246, 319
HpaII	CCGG	1 cut(s)	342
HphI	GGTGA	2 cut(s)	85, 611
Hpy166II	GTNNAC	1 cut(s)	671
Hpy188I	TCNGA	2 cut(s)	366, 433
Hpy188III	TCNNGA	2 cut(s)	122, 128
Hpy8I	GTNNAC	1 cut(s)	671
HpyCH4III	ACNGT	2 cut(s)	605, 649
HpyCH4IV	ACGT	1 cut(s)	295
HpyCH4V	TGCA	4 cut(s)	134, 311, 491, 645
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 543, 642
HpyF3I	CTNAG	4 cut(s)	11, 159, 197, 530
HpySE526I	ACGT	1 cut(s)	295
Hsp92II	CATG	8 cut(s)	37, 106, 138, 145, 218, 274, 281, 373
Ksp22I	TGATCA	1 cut(s)	79
Kzo9I	GATC	5 cut(s)	79, 124, 589, 654, 661
LmnI	GCTCC	2 cut(s)	354, 633
Lsp1109I	GCAGC	3 cut(s)	5, 295, 503
LweI	GCATC	3 cut(s)	121, 295, 296
MaeI	CTAG	4 cut(s)	113, 524, 593, 666
MaeII	ACGT	1 cut(s)	295
MaeIII	GTNAC	4 cut(s)	73, 236, 568, 599
MalI	GATC	5 cut(s)	81, 126, 591, 656, 663
MboI	GATC	5 cut(s)	79, 124, 589, 654, 661
MboII	GAAGA	4 cut(s)	175, 514, 613, 620
MflI	RGATCY	3 cut(s)	589, 654, 661
MhlI	GDGCHC	1 cut(s)	638
MluCI	AATT	5 cut(s)	95, 185, 231, 385, 482
MlyI	GAGTC	1 cut(s)	328
MnlI	CCTC	8 cut(s)	42, 76, 192, 328, 345, 349, 527, 570
Mph1103I	ATGCAT	1 cut(s)	136
MroXI	GAANNNNTTC	1 cut(s)	250
MseI	TTAA	2 cut(s)	398, 651
MspA1I	CMGCKG	1 cut(s)	494
MspI	CCGG	1 cut(s)	342
MwoI	GCNNNNNNNGC	3 cut(s)	62, 543, 642
NdeII	GATC	5 cut(s)	79, 124, 589, 654, 661
NlaIII	CATG	8 cut(s)	37, 106, 138, 145, 218, 274, 281, 373
NlaIV	GGNNCC	1 cut(s)	663
NmeAIII	GCCGAG	1 cut(s)	358
NmuCI	GTSAC	2 cut(s)	73, 599
NsiI	ATGCAT	1 cut(s)	136
NspI	RCATGY	2 cut(s)	218, 373
PceI	AGGCCT	1 cut(s)	338
PdmI	GAANNNNTTC	1 cut(s)	250
PfeI	GAWTC	1 cut(s)	246
PkrI	GCNGC	3 cut(s)	20, 310, 493
PleI	GAGTC	1 cut(s)	327
PpsI	GAGTC	1 cut(s)	327
PsiI	TTATAA	1 cut(s)	191
PspEI	GGTNACC	1 cut(s)	599
PspFI	CCCAGC	1 cut(s)	357
PspN4I	GGNNCC	1 cut(s)	663
PspPI	GGNCC	2 cut(s)	262, 545
PstI	CTGCAG	2 cut(s)	313, 493
PstNI	CAGNNNCTG	1 cut(s)	18
PsuI	RGATCY	3 cut(s)	589, 654, 661
PvuII	CAGCTG	1 cut(s)	494
RsaI	GTAC	2 cut(s)	140, 528
RsaNI	GTAC	2 cut(s)	139, 527
SaqAI	TTAA	2 cut(s)	398, 651
SatI	GCNGC	3 cut(s)	19, 309, 492
Sau3AI	GATC	5 cut(s)	79, 124, 589, 654, 661
Sau96I	GGNCC	2 cut(s)	262, 545
ScaI	AGTACT	1 cut(s)	528
SchI	GAGTC	1 cut(s)	328
SduI	GDGCHC	1 cut(s)	638
SetI	ASST	9 cut(s)	53, 160, 198, 298, 331, 359, 451, 496, 619
SfaNI	GCATC	3 cut(s)	121, 295, 296
SfcI	CTRYAG	2 cut(s)	309, 489
SfiI	GGCCNNNNNGGCC	1 cut(s)	543
Sse9I	AATT	5 cut(s)	95, 185, 231, 385, 482
SseBI	AGGCCT	1 cut(s)	338
SspMI	CTAG	4 cut(s)	113, 524, 593, 666
StuI	AGGCCT	1 cut(s)	338
TaaI	ACNGT	2 cut(s)	605, 649
TaiI	ACGT	1 cut(s)	298
TasI	AATT	5 cut(s)	95, 185, 231, 385, 482
TatI	WGTACW	1 cut(s)	526
TfiI	GAWTC	1 cut(s)	246
Tru1I	TTAA	2 cut(s)	398, 651
Tru9I	TTAA	2 cut(s)	398, 651
TscAI	CASTG	2 cut(s)	559, 634
TseFI	GTSAC	2 cut(s)	73, 599
TseI	GCWGC	3 cut(s)	18, 308, 491
Tsp45I	GTSAC	2 cut(s)	73, 599
TspDTI	ATGAA	3 cut(s)	33, 471, 613
TspRI	CASTG	2 cut(s)	559, 634
XceI	RCATGY	2 cut(s)	218, 373
XmnI	GAANNNNTTC	1 cut(s)	250
XspI	CTAG	4 cut(s)	113, 524, 593, 666
ZrmI	AGTACT	1 cut(s)	528
Zsp2I	ATGCAT	1 cut(s)	136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.