Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0008902

Physical Location & Seq

Genomic Coordinates Forward (+)

28803323 .. 28803823

Gene Structure 501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG130900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGTTCAGCAGGGATAATTCAACCAGATTAAACTCTTTCAGTATTGTTCGTAAATGGGCTTCTGATGGTGGCTCTCCAAGTATTTCAGTTGCTAAAATTAGTTGCTTGCATTTTATGTTTTTTCGATACATCACCATAATTTCTTGTCATGAAGCTACAAATGAAAATGGGACATCTCGTAAGCGAGAATTATCTGCAGCTGGACAGAAGAAAACCCAAACCAATGTTCGAGTACTTAGAGGCCATACTGGCCCTATCACTGCTCTACATTGTGTAACAAGGAGGGAAGTTTGGGATCTAGTGGGTGACCGTGAAGACGCAGGTTTCTTCATCAGTGGGAGCACAGACTGCACGGTTAAGATCTGTGATCCTAGTTTACCCGTTGATTATGACTTATGCTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0002682 GO:0002683 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0007049 GO:0007275 GO:0008150 GO:0009791 GO:0009825 GO:0009888 GO:0009987 GO:0010235 GO:0010374 GO:0010440 GO:0016020 GO:0016049 GO:0022402 GO:0030135 GO:0030136 GO:0031347 GO:0031348 GO:0031410 GO:0031461 GO:0031982 GO:0032501 GO:0032502 GO:0032506 GO:0032991 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045824 GO:0048519 GO:0048583 GO:0048585 GO:0048856 GO:0048869 GO:0050776 GO:0050777 GO:0050789 GO:0051301 GO:0061640 GO:0065007 GO:0071944 GO:0080008 GO:0080134 GO:0090558 GO:0097708 GO:1902410 GO:1902494 GO:1903047 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DENN WD40 dDENN uDENN

Protein Analysis

134

Amino Acids

14.97

Weight (kDa)

8.59

Isoelectric Point (pI)

32.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008902)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0150541 RchiOBHm_Chr3g0491251 RchiOBHm_Chr5g0051891
rosa_multiflora	Rmu_co8305513.1_g000001 Rmu_sc0000147.1_g000063
rosa_roxburghii	Rroxscaffold_4G00294790 Rroxscaffold_5G00348390 Rroxscaffold_5G00366660 Rroxscaffold_6G00392110 Rroxscaffold_7G00199170
rosa_rugosa	Rorug04G0059000 Rorug04G0059100 Rorug04G0059100 Rorug04G0059200
rosa_samantha	Rh1AG138900 Rh1CG130900 Rh3AG297800 Rh3CG330800 Rh5AG452800 Rh5BG359300
rosa_wichuraiana	Rw2G039400 Rw3G026280 Rw6G005350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	311
AclWI	GGATC	2 cut(s)	303, 362
AfaI	GTAC	1 cut(s)	234
AgsI	TTSAA	1 cut(s)	21
AjuI	GAANNNNNNNTTGG	2 cut(s)	210, 242
AluBI	AGCT	2 cut(s)	155, 200
AluI	AGCT	2 cut(s)	155, 200
Alw21I	GWGCWC	1 cut(s)	344
AlwI	GGATC	2 cut(s)	303, 362
AoxI	GGCC	2 cut(s)	241, 250
ApeKI	GCWGC	1 cut(s)	197
AspS9I	GGNCC	1 cut(s)	251
AsuHPI	GGTGA	2 cut(s)	124, 317
BarI	GAAGNNNNNNTAC	2 cut(s)	43, 75
BbsI	GAAGAC	1 cut(s)	321
Bbv12I	GWGCWC	1 cut(s)	344
BbvI	GCAGC	1 cut(s)	209
BccI	CCATC	1 cut(s)	59
BfaI	CTAG	2 cut(s)	299, 372
BfmI	CTRYAG	1 cut(s)	195
BfuAI	ACCTGC	1 cut(s)	311
BglI	GCCNNNNNGGC	1 cut(s)	249
BglII	AGATCT	1 cut(s)	360
BisI	GCNGC	1 cut(s)	198
BlsI	GCNGC	1 cut(s)	199
BmcAI	AGTACT	1 cut(s)	234
BmgT120I	GGNCC	1 cut(s)	251
BpiI	GAAGAC	1 cut(s)	321
Bse1I	ACTGG	1 cut(s)	253
BseNI	ACTGG	1 cut(s)	253
BseXI	GCAGC	1 cut(s)	209
BsgI	GTGCAG	1 cut(s)	334
BshFI	GGCC	2 cut(s)	243, 252
BsiHKAI	GWGCWC	1 cut(s)	344
BslFI	GGGAC	1 cut(s)	184
BsmFI	GGGAC	1 cut(s)	184
BsnI	GGCC	2 cut(s)	243, 252
Bsp1286I	GDGCHC	1 cut(s)	344
Bsp143I	GATC	3 cut(s)	295, 360, 367
BspANI	GGCC	2 cut(s)	243, 252
BspHI	TCATGA	1 cut(s)	148
BspMAI	CTGCAG	1 cut(s)	199
BspMI	ACCTGC	1 cut(s)	311
BspPI	GGATC	2 cut(s)	303, 362
BsrI	ACTGG	1 cut(s)	253
BssMI	GATC	3 cut(s)	295, 360, 367
Bst4CI	ACNGT	2 cut(s)	311, 355
BstAPI	GCANNNNNTGC	1 cut(s)	348
BstC8I	GCNNGC	1 cut(s)	107
BstDEI	CTNAG	1 cut(s)	236
BstEII	GGTNACC	1 cut(s)	305
BstKTI	GATC	3 cut(s)	298, 363, 370
BstMBI	GATC	3 cut(s)	295, 360, 367
BstMWI	GCNNNNNNNGC	2 cut(s)	249, 348
BstPI	GGTNACC	1 cut(s)	305
BstSFI	CTRYAG	1 cut(s)	195
BstV1I	GCAGC	1 cut(s)	209
BstV2I	GAAGAC	1 cut(s)	321
BstX2I	RGATCY	2 cut(s)	295, 360
BstYI	RGATCY	2 cut(s)	295, 360
BsuRI	GGCC	2 cut(s)	243, 252
BtsI	GCAGTG	1 cut(s)	258
BtsIMutI	CAGTG	2 cut(s)	258, 340
BveI	ACCTGC	1 cut(s)	311
Cac8I	GCNNGC	1 cut(s)	107
CciI	TCATGA	1 cut(s)	148
Cfr13I	GGNCC	1 cut(s)	251
CseI	GACGC	1 cut(s)	326
Csp6I	GTAC	1 cut(s)	233
CviAII	CATG	1 cut(s)	149
CviJI	RGCY	6 cut(s)	59, 72, 155, 200, 243, 252
CviKI_1	RGCY	6 cut(s)	59, 72, 155, 200, 243, 252
CviQI	GTAC	1 cut(s)	233
DdeI	CTNAG	1 cut(s)	236
DpnI	GATC	3 cut(s)	297, 362, 369
DpnII	GATC	3 cut(s)	295, 360, 367
Eco91I	GGTNACC	1 cut(s)	305
EcoO65I	GGTNACC	1 cut(s)	305
FaeI	CATG	1 cut(s)	152
FaiI	YATR	6 cut(s)	116, 137, 150, 246, 390, 397
FaqI	GGGAC	1 cut(s)	184
FatI	CATG	1 cut(s)	148
Fnu4HI	GCNGC	1 cut(s)	198
Fsp4HI	GCNGC	1 cut(s)	198
FspBI	CTAG	2 cut(s)	299, 372
GluI	GCNGC	1 cut(s)	198
HaeIII	GGCC	2 cut(s)	243, 252
HgaI	GACGC	1 cut(s)	326
Hin1II	CATG	1 cut(s)	152
HphI	GGTGA	2 cut(s)	124, 317
Hpy166II	GTNNAC	1 cut(s)	377
Hpy188I	TCNGA	1 cut(s)	64
Hpy188III	TCNNGA	1 cut(s)	149
Hpy8I	GTNNAC	1 cut(s)	377
HpyCH4III	ACNGT	2 cut(s)	311, 355
HpyCH4V	TGCA	3 cut(s)	109, 197, 351
HpyF10VI	GCNNNNNNNGC	2 cut(s)	249, 348
HpyF3I	CTNAG	1 cut(s)	236
Hsp92II	CATG	1 cut(s)	152
Kzo9I	GATC	3 cut(s)	295, 360, 367
LmnI	GCTCC	1 cut(s)	339
LpnPI	CCDG	4 cut(s)	37, 186, 234, 306
Lsp1109I	GCAGC	1 cut(s)	209
MaeI	CTAG	2 cut(s)	299, 372
MaeIII	GTNAC	2 cut(s)	274, 305
MalI	GATC	3 cut(s)	297, 362, 369
MboI	GATC	3 cut(s)	295, 360, 367
MboII	GAAGA	3 cut(s)	220, 319, 326
MflI	RGATCY	2 cut(s)	295, 360
MhlI	GDGCHC	1 cut(s)	344
MluCI	AATT	4 cut(s)	16, 96, 138, 188
MnlI	CCTC	2 cut(s)	233, 276
MseI	TTAA	3 cut(s)	29, 357, 403
MspA1I	CMGCKG	1 cut(s)	200
MwoI	GCNNNNNNNGC	2 cut(s)	249, 348
NdeII	GATC	3 cut(s)	295, 360, 367
NlaIII	CATG	1 cut(s)	152
NmuCI	GTSAC	1 cut(s)	305
PagI	TCATGA	1 cut(s)	148
PkrI	GCNGC	1 cut(s)	199
PspEI	GGTNACC	1 cut(s)	305
PspPI	GGNCC	1 cut(s)	251
PstI	CTGCAG	1 cut(s)	199
PsuI	RGATCY	2 cut(s)	295, 360
PvuII	CAGCTG	1 cut(s)	200
RsaI	GTAC	1 cut(s)	234
RsaNI	GTAC	1 cut(s)	233
SaqAI	TTAA	3 cut(s)	29, 357, 403
SatI	GCNGC	1 cut(s)	198
Sau3AI	GATC	3 cut(s)	295, 360, 367
Sau96I	GGNCC	1 cut(s)	251
ScaI	AGTACT	1 cut(s)	234
SduI	GDGCHC	1 cut(s)	344
SetI	ASST	3 cut(s)	157, 202, 325
SfcI	CTRYAG	1 cut(s)	195
SfiI	GGCCNNNNNGGCC	1 cut(s)	249
Sse9I	AATT	4 cut(s)	16, 96, 138, 188
SspMI	CTAG	2 cut(s)	299, 372
TaaI	ACNGT	2 cut(s)	311, 355
TaqI	TCGA	2 cut(s)	124, 229
TasI	AATT	4 cut(s)	16, 96, 138, 188
TatI	WGTACW	1 cut(s)	232
Tru1I	TTAA	3 cut(s)	29, 357, 403
Tru9I	TTAA	3 cut(s)	29, 357, 403
TscAI	CASTG	2 cut(s)	265, 340
TseFI	GTSAC	1 cut(s)	305
TseI	GCWGC	1 cut(s)	197
Tsp45I	GTSAC	1 cut(s)	305
TspDTI	ATGAA	3 cut(s)	165, 177, 319
TspRI	CASTG	2 cut(s)	265, 340
XspI	CTAG	2 cut(s)	299, 372
ZrmI	AGTACT	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.