Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0008902

Physical Location & Seq

Genomic Coordinates Forward (+)

14765881 .. 14770896

Gene Structure 5016 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00294790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGAGCATGTATTCAAATGGTTTCTGGGAAAGCTACTTTGACTGTCTAATGGAACGGTCTACTCAAGTTACAATAAAGCTGAGGGGGTTATTGTCGCATGTTCAACAACTACAAATTGGTTACTGGGGAATCAGTTCTTTCAAGGCCCAATCCATGTCTCATGGATTAGCATCTCCACGTTCAAAAGATGCTGCAGTTGAGAGTCAGCAACCTGCCGAGGCCTCCGGTGTTGGGAGGAGCTGGGTTCAGAGCATGTTCAGCAAGGATAATTCAACCAGATTAAACTCTTTCAGTCGTGTTCGCAAATGGACTTCTGATGGTGGCTCTCCAGGTATTTCAGTTGCTAAAATTAGTTGCTTGCATTTTATGTTTTTTCGATACATCACCATAATTTCTTTTCATGAAGCTACAAATGAAAATGGGACATCTCGTAAGAGAGAATTATCTGCAGCTGGACAGAAGAAAACCCAAACCAATGTTCTAGTACTTAGAGGCCATACTAGCCCTATCACTGCTCTACATTGTGTAACAAGGAGGGAAGTTTGGGATCTAGTGGGTGACCGTGAAGACGCAGGTTTCTTCATTAGTGGGAGCACAGACTGCACGGTTAAGATCTGGGATCCTAGTTTACCCGTTGATTATGACTTATGCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0002682 GO:0002683 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0007049 GO:0007275 GO:0008150 GO:0009791 GO:0009825 GO:0009888 GO:0009987 GO:0010235 GO:0010374 GO:0010440 GO:0016020 GO:0016049 GO:0022402 GO:0030135 GO:0030136 GO:0031347 GO:0031348 GO:0031410 GO:0031461 GO:0031982 GO:0032501 GO:0032502 GO:0032506 GO:0032991 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045824 GO:0048519 GO:0048583 GO:0048585 GO:0048856 GO:0048869 GO:0050776 GO:0050777 GO:0050789 GO:0051301 GO:0061640 GO:0065007 GO:0071944 GO:0080008 GO:0080134 GO:0090558 GO:0097708 GO:1902410 GO:1902494 GO:1903047 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DENN WD40 dDENN uDENN

Protein Analysis

218

Amino Acids

24.43

Weight (kDa)

8.83

Isoelectric Point (pI)

42.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008902)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0150541 RchiOBHm_Chr3g0491251 RchiOBHm_Chr5g0051891
rosa_multiflora	Rmu_co8305513.1_g000001 Rmu_sc0000147.1_g000063
rosa_roxburghii	Rroxscaffold_4G00294790 Rroxscaffold_5G00348390 Rroxscaffold_5G00366660 Rroxscaffold_6G00392110 Rroxscaffold_7G00199170
rosa_rugosa	Rorug04G0059000 Rorug04G0059100 Rorug04G0059100 Rorug04G0059200
rosa_samantha	Rh1AG138900 Rh1CG130900 Rh3AG297800 Rh3CG330800 Rh5AG452800 Rh5BG359300
rosa_wichuraiana	Rw2G039400 Rw3G026280 Rw6G005350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	220, 563
AccI	GTMKAC	1 cut(s)	59
AclWI	GGATC	3 cut(s)	555, 614, 627
AfaI	GTAC	1 cut(s)	486
AfiI	CCNNNNNNNGG	1 cut(s)	231
AgsI	TTSAA	5 cut(s)	15, 104, 142, 183, 273
AjnI	CCWGG	1 cut(s)	328
AjuI	GAANNNNNNNTTGG	2 cut(s)	462, 494
AluBI	AGCT	5 cut(s)	33, 79, 240, 407, 452
AluI	AGCT	5 cut(s)	33, 79, 240, 407, 452
Alw21I	GWGCWC	1 cut(s)	596
Alw26I	GTCTC	1 cut(s)	162
AlwI	GGATC	3 cut(s)	555, 614, 627
AoxI	GGCC	3 cut(s)	144, 219, 493
ApeKI	GCWGC	2 cut(s)	191, 449
Asp700I	GAANNNNTTC	1 cut(s)	133
AspS9I	GGNCC	1 cut(s)	145
AsuHPI	GGTGA	2 cut(s)	376, 569
BamHI	GGATCC	1 cut(s)	619
BbsI	GAAGAC	1 cut(s)	573
Bbv12I	GWGCWC	1 cut(s)	596
BbvCI	CCTCAGC	1 cut(s)	80
BbvI	GCAGC	2 cut(s)	178, 461
BccI	CCATC	1 cut(s)	311
BciT130I	CCWGG	1 cut(s)	330
BcoDI	GTCTC	1 cut(s)	162
BfaI	CTAG	4 cut(s)	482, 501, 551, 624
BfmI	CTRYAG	2 cut(s)	192, 447
BfuAI	ACCTGC	2 cut(s)	220, 563
BglII	AGATCT	1 cut(s)	612
BisI	GCNGC	2 cut(s)	192, 450
BlsI	GCNGC	2 cut(s)	193, 451
BmcAI	AGTACT	1 cut(s)	486
Bme1390I	CCNGG	1 cut(s)	330
BmgT120I	GGNCC	1 cut(s)	145
BmiI	GGNNCC	1 cut(s)	621
BmrFI	CCNGG	1 cut(s)	330
BmrI	ACTGGG	1 cut(s)	133
BmsI	GCATC	2 cut(s)	178, 179
BmuI	ACTGGG	1 cut(s)	133
BpiI	GAAGAC	1 cut(s)	573
BpmI	CTGGAG	1 cut(s)	312
Bpu10I	CCTNAGC	1 cut(s)	80
BpuEI	CTTGAG	1 cut(s)	48
BsaBI	GATNNNNATC	1 cut(s)	169
BsaJI	CCNNGG	1 cut(s)	216
BsaWI	WCCGGW	1 cut(s)	224
Bsc4I	CCNNNNNNNGG	1 cut(s)	231
Bse1I	ACTGG	1 cut(s)	128
Bse8I	GATNNNNATC	1 cut(s)	169
BseBI	CCWGG	1 cut(s)	330
BseDI	CCNNGG	1 cut(s)	216
BseJI	GATNNNNATC	1 cut(s)	169
BseLI	CCNNNNNNNGG	1 cut(s)	231
BseMII	CTCAG	1 cut(s)	71
BseNI	ACTGG	1 cut(s)	128
BseRI	GAGGAG	1 cut(s)	250
BseXI	GCAGC	2 cut(s)	178, 461
BseYI	CCCAGC	1 cut(s)	240
BsgI	GTGCAG	1 cut(s)	586
BshFI	GGCC	3 cut(s)	146, 221, 495
BsiHKAI	GWGCWC	1 cut(s)	596
BsiSI	CCGG	1 cut(s)	225
BslFI	GGGAC	1 cut(s)	436
BslI	CCNNNNNNNGG	1 cut(s)	231
BsmAI	GTCTC	1 cut(s)	162
BsmFI	GGGAC	1 cut(s)	436
BsnI	GGCC	3 cut(s)	146, 221, 495
Bsp1286I	GDGCHC	1 cut(s)	596
Bsp143I	GATC	3 cut(s)	547, 612, 619
BspANI	GGCC	3 cut(s)	146, 221, 495
BspCNI	CTCAG	1 cut(s)	72
BspHI	TCATGA	1 cut(s)	400
BspLI	GGNNCC	1 cut(s)	621
BspMAI	CTGCAG	2 cut(s)	196, 451
BspMI	ACCTGC	2 cut(s)	220, 563
BspPI	GGATC	3 cut(s)	555, 614, 627
BsrI	ACTGG	1 cut(s)	128
BssECI	CCNNGG	1 cut(s)	216
BssMI	GATC	3 cut(s)	547, 612, 619
Bst2UI	CCWGG	1 cut(s)	330
Bst4CI	ACNGT	4 cut(s)	44, 57, 563, 607
BstAPI	GCANNNNNTGC	1 cut(s)	600
BstC8I	GCNNGC	1 cut(s)	359
BstDEI	CTNAG	2 cut(s)	80, 488
BstEII	GGTNACC	1 cut(s)	557
BstKTI	GATC	3 cut(s)	550, 615, 622
BstMAI	GTCTC	1 cut(s)	162
BstMBI	GATC	3 cut(s)	547, 612, 619
BstMWI	GCNNNNNNNGC	3 cut(s)	258, 501, 600
BstNI	CCWGG	1 cut(s)	330
BstNSI	RCATGY	3 cut(s)	10, 101, 256
BstPI	GGTNACC	1 cut(s)	557
BstSCI	CCNGG	1 cut(s)	328
BstSFI	CTRYAG	2 cut(s)	192, 447
BstV1I	GCAGC	2 cut(s)	178, 461
BstV2I	GAAGAC	1 cut(s)	573
BstX2I	RGATCY	3 cut(s)	547, 612, 619
BstYI	RGATCY	3 cut(s)	547, 612, 619
BsuRI	GGCC	3 cut(s)	146, 221, 495
BtsI	GCAGTG	1 cut(s)	510
BtsIMutI	CAGTG	1 cut(s)	510
BveI	ACCTGC	2 cut(s)	220, 563
Cac8I	GCNNGC	1 cut(s)	359
CciI	TCATGA	1 cut(s)	400
Cfr13I	GGNCC	1 cut(s)	145
CseI	GACGC	1 cut(s)	578
Csp6I	GTAC	1 cut(s)	485
CviAII	CATG	6 cut(s)	7, 98, 154, 161, 253, 401
CviQI	GTAC	1 cut(s)	485
DdeI	CTNAG	2 cut(s)	80, 488
DpnI	GATC	3 cut(s)	549, 614, 621
DpnII	GATC	3 cut(s)	547, 612, 619
Eco147I	AGGCCT	1 cut(s)	221
Eco91I	GGTNACC	1 cut(s)	557
EcoO65I	GGTNACC	1 cut(s)	557
EcoRII	CCWGG	1 cut(s)	328
FaeI	CATG	6 cut(s)	10, 101, 157, 164, 256, 404
FaqI	GGGAC	1 cut(s)	436
FatI	CATG	6 cut(s)	6, 97, 153, 160, 252, 400
FblI	GTMKAC	1 cut(s)	59
Fnu4HI	GCNGC	2 cut(s)	192, 450
Fsp4HI	GCNGC	2 cut(s)	192, 450
FspBI	CTAG	4 cut(s)	482, 501, 551, 624
GluI	GCNGC	2 cut(s)	192, 450
GsaI	CCCAGC	1 cut(s)	244
GsuI	CTGGAG	1 cut(s)	312
HaeIII	GGCC	3 cut(s)	146, 221, 495
HapII	CCGG	1 cut(s)	225
HgaI	GACGC	1 cut(s)	578
Hin1II	CATG	6 cut(s)	10, 101, 157, 164, 256, 404
HinfI	GANTC	2 cut(s)	129, 202
HpaII	CCGG	1 cut(s)	225
HphI	GGTGA	2 cut(s)	376, 569
Hpy166II	GTNNAC	2 cut(s)	60, 629
Hpy188I	TCNGA	2 cut(s)	249, 316
Hpy188III	TCNNGA	1 cut(s)	401
Hpy8I	GTNNAC	2 cut(s)	60, 629
HpyCH4III	ACNGT	4 cut(s)	44, 57, 563, 607
HpyCH4IV	ACGT	1 cut(s)	178
HpyCH4V	TGCA	4 cut(s)	194, 361, 449, 603
HpyF10VI	GCNNNNNNNGC	3 cut(s)	258, 501, 600
HpyF3I	CTNAG	2 cut(s)	80, 488
HpySE526I	ACGT	1 cut(s)	178
Hsp92II	CATG	6 cut(s)	10, 101, 157, 164, 256, 404
Kzo9I	GATC	3 cut(s)	547, 612, 619
LmnI	GCTCC	2 cut(s)	237, 591
Lsp1109I	GCAGC	2 cut(s)	178, 461
LweI	GCATC	2 cut(s)	178, 179
MaeI	CTAG	4 cut(s)	482, 501, 551, 624
MaeII	ACGT	1 cut(s)	178
MaeIII	GTNAC	4 cut(s)	67, 119, 526, 557
MalI	GATC	3 cut(s)	549, 614, 621
MboI	GATC	3 cut(s)	547, 612, 619
MboII	GAAGA	3 cut(s)	472, 571, 578
MflI	RGATCY	3 cut(s)	547, 612, 619
MhlI	GDGCHC	1 cut(s)	596
MluCI	AATT	5 cut(s)	114, 268, 348, 390, 440
MlyI	GAGTC	1 cut(s)	211
MnlI	CCTC	6 cut(s)	75, 211, 228, 232, 485, 528
MroXI	GAANNNNTTC	1 cut(s)	133
MseI	TTAA	2 cut(s)	281, 609
MspA1I	CMGCKG	1 cut(s)	452
MspI	CCGG	1 cut(s)	225
MspR9I	CCNGG	1 cut(s)	330
MvaI	CCWGG	1 cut(s)	330
MwoI	GCNNNNNNNGC	3 cut(s)	258, 501, 600
NdeII	GATC	3 cut(s)	547, 612, 619
NlaIII	CATG	6 cut(s)	10, 101, 157, 164, 256, 404
NlaIV	GGNNCC	1 cut(s)	621
NmeAIII	GCCGAG	1 cut(s)	241
NmuCI	GTSAC	1 cut(s)	557
NspI	RCATGY	3 cut(s)	10, 101, 256
PagI	TCATGA	1 cut(s)	400
PceI	AGGCCT	1 cut(s)	221
PdmI	GAANNNNTTC	1 cut(s)	133
PfeI	GAWTC	1 cut(s)	129
PkrI	GCNGC	2 cut(s)	193, 451
PleI	GAGTC	1 cut(s)	210
PpsI	GAGTC	1 cut(s)	210
Psp6I	CCWGG	1 cut(s)	328
PspEI	GGTNACC	1 cut(s)	557
PspFI	CCCAGC	1 cut(s)	240
PspGI	CCWGG	1 cut(s)	328
PspN4I	GGNNCC	1 cut(s)	621
PspPI	GGNCC	1 cut(s)	145
PstI	CTGCAG	2 cut(s)	196, 451
PsuI	RGATCY	3 cut(s)	547, 612, 619
PvuII	CAGCTG	1 cut(s)	452
RsaI	GTAC	1 cut(s)	486
RsaNI	GTAC	1 cut(s)	485
SaqAI	TTAA	2 cut(s)	281, 609
SatI	GCNGC	2 cut(s)	192, 450
Sau3AI	GATC	3 cut(s)	547, 612, 619
Sau96I	GGNCC	1 cut(s)	145
ScaI	AGTACT	1 cut(s)	486
SchI	GAGTC	1 cut(s)	211
ScrFI	CCNGG	1 cut(s)	330
SduI	GDGCHC	1 cut(s)	596
SetI	ASST	9 cut(s)	35, 81, 181, 214, 242, 334, 409, 454, 577
SfaNI	GCATC	2 cut(s)	178, 179
SfcI	CTRYAG	2 cut(s)	192, 447
SmlI	CTYRAG	1 cut(s)	63
SmoI	CTYRAG	1 cut(s)	63
Sse9I	AATT	5 cut(s)	114, 268, 348, 390, 440
SseBI	AGGCCT	1 cut(s)	221
SspMI	CTAG	4 cut(s)	482, 501, 551, 624
StuI	AGGCCT	1 cut(s)	221
StyD4I	CCNGG	1 cut(s)	328
TaaI	ACNGT	4 cut(s)	44, 57, 563, 607
TaiI	ACGT	1 cut(s)	181
TaqI	TCGA	1 cut(s)	376
TasI	AATT	5 cut(s)	114, 268, 348, 390, 440
TatI	WGTACW	1 cut(s)	484
TfiI	GAWTC	1 cut(s)	129
Tru1I	TTAA	2 cut(s)	281, 609
Tru9I	TTAA	2 cut(s)	281, 609
TscAI	CASTG	1 cut(s)	517
TseFI	GTSAC	1 cut(s)	557
TseI	GCWGC	2 cut(s)	191, 449
Tsp45I	GTSAC	1 cut(s)	557
TspDTI	ATGAA	4 cut(s)	389, 417, 429, 571
TspRI	CASTG	1 cut(s)	517
XceI	RCATGY	3 cut(s)	10, 101, 256
XmiI	GTMKAC	1 cut(s)	59
XmnI	GAANNNNTTC	1 cut(s)	133
XspI	CTAG	4 cut(s)	482, 501, 551, 624
ZrmI	AGTACT	1 cut(s)	486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.